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SeminarNeuroscienceRecording

Rastermap: Extracting structure from high dimensional neural data

Carsen Stringer
HHMI, Janelia Research Campus
Oct 27, 2021

Large-scale neural recordings contain high-dimensional structure that cannot be easily captured by existing data visualization methods. We therefore developed an embedding algorithm called Rastermap, which captures highly nonlinear relationships between neurons, and provides useful visualizations by assigning each neuron to a location in the embedding space. Compared to standard algorithms such as t-SNE and UMAP, Rastermap finds finer and higher dimensional patterns of neural variability, as measured by quantitative benchmarks. We applied Rastermap to a variety of datasets, including spontaneous neural activity, neural activity during a virtual reality task, widefield neural imaging data during a 2AFC task, artificial neural activity from an agent playing atari games, and neural responses to visual textures. We found within these datasets unique subpopulations of neurons encoding abstract properties of the environment.

SeminarNeuroscienceRecording

Encoding and perceiving the texture of sounds: auditory midbrain codes for recognizing and categorizing auditory texture and for listening in noise

Monty Escabi
University of Connecticut
Oct 1, 2021

Natural soundscapes such as from a forest, a busy restaurant, or a busy intersection are generally composed of a cacophony of sounds that the brain needs to interpret either independently or collectively. In certain instances sounds - such as from moving cars, sirens, and people talking - are perceived in unison and are recognized collectively as single sound (e.g., city noise). In other instances, such as for the cocktail party problem, multiple sounds compete for attention so that the surrounding background noise (e.g., speech babble) interferes with the perception of a single sound source (e.g., a single talker). I will describe results from my lab on the perception and neural representation of auditory textures. Textures, such as a from a babbling brook, restaurant noise, or speech babble are stationary sounds consisting of multiple independent sound sources that can be quantitatively defined by summary statistics of an auditory model (McDermott & Simoncelli 2011). How and where in the auditory system are summary statistics represented and the neural codes that potentially contribute towards their perception, however, are largely unknown. Using high-density multi-channel recordings from the auditory midbrain of unanesthetized rabbits and complementary perceptual studies on human listeners, I will first describe neural and perceptual strategies for encoding and perceiving auditory textures. I will demonstrate how distinct statistics of sounds, including the sound spectrum and high-order statistics related to the temporal and spectral correlation structure of sounds, contribute to texture perception and are reflected in neural activity. Using decoding methods I will then demonstrate how various low and high-order neural response statistics can differentially contribute towards a variety of auditory tasks including texture recognition, discrimination, and categorization. Finally, I will show examples from our recent studies on how high-order sound statistics and accompanying neural activity underlie difficulties for recognizing speech in background noise.

SeminarNeuroscience

Circuit mechanisms for synaptic plasticity in the rodent somatosensory cortex

Anthony Holtmaat
Department of Basic Neurosciences, University of Geneva, CH
Apr 1, 2021

Sensory experience and perceptual learning changes receptive field properties of cortical pyramidal neurons possibly mediated by long-term potentiation (LTP) of synapses. We have previously shown in the mouse somatosensory cortex (S1) that sensory-driven LTP in layer (L) 2/3 pyramidal neurons is dependent on higher order thalamic feedback from the posteromedial nucleus (POm), which is thought to convey contextual information from various cortical regions integrated with sensory input. We have followed up on this work by dissecting the cortical microcircuitry that underlies this form of LTP. We found that repeated pairing of Pom thalamocortical and intracortical pathway activity in brain slices induces NMDAr-dependent LTP of the L2/3 synapses that are driven by the intracortical pathway. Repeated pairing also recruits activity of vasoactive intestinal peptide (VIP) interneurons, whereas it reduces the activity of somatostatin (SST) interneurons. VIP interneuron-mediated inhibition of SST interneurons has been established as a motif for the disinhibition of pyramidal neurons. By chemogenetic interrogation we found that activation of this disinhibitory microcircuit motif by higher-order thalamic feedback is indispensable for eliciting LTP. Preliminary results in vivo suggest that VIP neuron activity also increases during sensory-evoked LTP. Together, this suggests that the higherorder thalamocortical feedback may help modifying the strength of synaptic circuits that process first-order sensory information in S1. To start characterizing the relationship between higher-order feedback and cortical plasticity during learning in vivo, we adapted a perceptual learning paradigm in which head-fixed mice have to discriminate two types of textures in order to obtain a reward. POm axons or L2/3 pyramidal neurons labeled with the genetically encoded calcium indicator GCaMP6s were imaged during the acquisition of this task as well as the subsequent learning of a new discrimination rule. We found that a subpopulation of the POm axons and L2/3 neurons dynamically represent textures. Moreover, upon a change in reward contingencies, a fraction of the L2/3 neurons re-tune their selectivity to the texture that is newly associated with the reward. Altogether, our data indicates that higher-order thalamic feedback can facilitate synaptic plasticity and may be implicated in dynamic sensory stimulus representations in S1, which depends on higher-order features that are associated with the stimuli.

ePosterNeuroscience

Perceptual and neural representations of naturalistic texture information in developing monkeys

Gerick M. Lee,Carla L. Rodríguez-Deliz,Najib J. Majaj,J. Anthony Movshon,Lynne Kiorpes

COSYNE 2022

ePosterNeuroscience

Perceptual and neural representations of naturalistic texture information in developing monkeys

Gerick M. Lee,Carla L. Rodríguez-Deliz,Najib J. Majaj,J. Anthony Movshon,Lynne Kiorpes

COSYNE 2022

ePosterNeuroscience

Processing of visual textures in the mouse visual cortex

Federico Bolaños,Javier G. Orlandi,Akshay V. Jagadeesh,Justin L. Gardner,Andrea Benucci

COSYNE 2022

ePosterNeuroscience

Processing of visual textures in the mouse visual cortex

Federico Bolaños,Javier G. Orlandi,Akshay V. Jagadeesh,Justin L. Gardner,Andrea Benucci

COSYNE 2022

ePosterNeuroscience

Task-dependent contribution of higher-order statistics to natural texture processing

Daniel Herrera,Ruben Coen-Cagli

COSYNE 2022

ePosterNeuroscience

Task-dependent contribution of higher-order statistics to natural texture processing

Daniel Herrera,Ruben Coen-Cagli

COSYNE 2022

ePosterNeuroscience

V2 builds a generalizable texture representation

Abhimanyu Pavuluri & Adam Kohn

COSYNE 2023

ePosterNeuroscience

Selectivity of neurons in macaque V4 for object and texture images

Justin Lieber, Timothy Oleskiw, Laura Palmieri, Eero Simoncelli, J Anthony Movshon

COSYNE 2025

ePosterNeuroscience

Multiple sensory modalities contribute to texture discrimination in head-fixed mice

Ilaria Zanchi, Alejandro Sempere, Marco Celotto, Lorenzo Tausani, Dania Vecchia, Angelo Forli, Jacopo Bonato, Stefano Panzeri, Tommaso Fellin

FENS Forum 2024

texture coverage

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