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Authors & Affiliations
Uğur Coşkun, Nina Hempel, Dennis M. Krüger, Susanne Burkhardt, Anna-Lena Schuetz, Farahnaz Sananbenesi, André Fischer
Abstract
The vast majority of the human genome consists of noncoding elements, including introns, intergenic regions, and various types of noncoding RNAs (ncRNAs). As such, protein-coding genes represent only 1.5% of the transcriptome while the remaining 98,5% are ncRNAs. Long non-coding RNAs (lncRNAs) form the largest class of ncRNAs and are characterized by a length of more than 200 nucleotides. The role of lncRNAs in the central nervous system (CNS) is still not well understood. In this project we identified a novel lncRNA that we named CNS-LNC due to its specific expression pattern in the adult brain. We show that within the brain CNS-LNC is exclusively expressed in non-neuronal cell types in both human and mouse, with a particularly high expression in astrocytes. Here, CNS-LNC is localized to the nucleus suggesting a role in gene-expression control. Our functional analysis indicates that CNS-LNC expression is downregulated in reactive astrocytes. Knockdown (KD) of CNS-LNC in pAst leads to upregulation of virus response-related genes and downregulation of cilium organization and synapse-related genes. Furthermore, astrocyte condition medium from CNS-LNC KD cells affected neuronal activity when administer to neurons. In summary, our results suggest CNS-LNC as a novel regulator of astrocyte-mediated neuronal support function.