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Seminar✓ Recording AvailableNeuroscience

Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses

Willem Wybo

Dr.

Morrison lab, Forschungszentrum Jülich, Germany

Schedule
Thursday, June 10, 2021

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Schedule

Thursday, June 10, 2021

6:30 PM Europe/Berlin

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Host: Bernstein SmartSteps

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Event Information

Domain

Neuroscience

Original Event

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Host

Bernstein SmartSteps

Duration

30 minutes

Abstract

There is little consensus on the level of spatial complexity at which dendrites operate. On the one hand, emergent evidence indicates that synapses cluster at micrometer spatial scales. On the other hand, most modelling and network studies ignore dendrites altogether. This dichotomy raises an urgent question: what is the smallest relevant spatial scale for understanding dendritic computation? We have developed a method to construct compartmental models at any level of spatial complexity. Through carefully chosen parameter fits, solvable in the least-squares sense, we obtain accurate reduced compartmental models. Thus, we are able to systematically construct passive as well as active dendrite models at varying degrees of spatial complexity. We evaluate which elements of the dendritic computational repertoire are captured by these models. We show that many canonical elements of the dendritic computational repertoire can be reproduced with few compartments. For instance, for a model to behave as a two-layer network, it is sufficient to fit a reduced model at the soma and at locations at the dendritic tips. In the basal dendrites of an L2/3 pyramidal model, we reproduce the backpropagation of somatic action potentials (APs) with a single dendritic compartment at the tip. Further, we obtain the well-known Ca-spike coincidence detection mechanism in L5 Pyramidal cells with as few as eleven compartments, the requirement being that their spacing along the apical trunk supports AP backpropagation. We also investigate whether afferent spatial connectivity motifs admit simplification by ablating targeted branches and grouping affected synapses onto the next proximal dendrite. We find that voltage in the remaining branches is reproduced if temporal conductance fluctuations stay below a limit that depends on the average difference in input resistance between the ablated branches and the next proximal dendrite. Consequently, when the average conductance load on distal synapses is constant, the dendritic tree can be simplified while appropriately decreasing synaptic weights. When the conductance level fluctuates strongly, for instance through a-priori unpredictable fluctuations in NMDA activation, a constant weight rescale factor cannot be found, and the dendrite cannot be simplified. We have created an open source Python toolbox (NEAT - https://neatdend.readthedocs.io/en/latest/) that automatises the simplification process. A NEST implementation of the reduced models, currently under construction, will enable the simulation of few-compartment models in large-scale networks, thus bridging the gap between cellular and network level neuroscience.

Topics

NMDA activationaction potentialsca-spike coincidence detectioncompartmental modelscomputational neurosciencedendritic computationdendritic morphologiesmodel reductionpyramidal cellssimplification processsynaptic clustering

About the Speaker

Willem Wybo

Dr.

Morrison lab, Forschungszentrum Jülich, Germany

Contact & Resources

Personal Website

www.fz-juelich.de/inm/inm-6/EN/Forschung/Morrison/artikel.html

@WillemWybo

Follow on Twitter/X

twitter.com/WillemWybo

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