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Seminar✓ Recording AvailableOpen Source

SpikeInterface

Alessio Buccino

Dr.

ETH Zurich

Schedule
Friday, June 11, 2021

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Schedule

Friday, June 11, 2021

4:00 AM America/Argentina/Buenos_Aires

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Host: Open Source Neuro

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Recording provided by the organiser.

Event Information

Domain

Open Source

Original Event

View source

Host

Open Source Neuro

Duration

70 minutes

Abstract

Much development has been directed toward improving the performance and automation of spike sorting. This continuous development, while essential, has contributed to an over-saturation of new, incompatible tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, we developed SpikeInterface, a Python framework designed to unify preexisting spike sorting technologies into a single codebase and to facilitate straightforward comparison and adoption of different approaches. With a few lines of code, researchers can reproducibly run, compare, and benchmark most modern spike sorting algorithms; pre-process, post-process, and visualize extracellular datasets; validate, curate, and export sorting outputs; and more. In this presentation, I will provide an overview of SpikeInterface and, with applications to real and simulated datasets, demonstrate how it can be utilized to reduce the burden of manual curation and to more comprehensively benchmark automated spike sorters.

Topics

Open Source SoftwarePythonSpikeInterfacealgorithm comparisonbenchmarkingdata visualizationelectrophysiologyextracellular datasetsmanual curationpython frameworkreproducible analysisspike sorting

About the Speaker

Alessio Buccino

Dr.

ETH Zurich

Contact & Resources

Personal Website

open-neuroscience.com/en/post/spikeinterface/

@buccino_alessio

Follow on Twitter/X

twitter.com/buccino_alessio

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