Neuroscience seminars

The cerebral cortex is the most evolved structure of the brain and the site for higher cognitive functions. It consists of 6 layers, each composed of specific types of neurons. Interconnectivity between cortical areas is critical for sensory integration and sensorimotor transformation. Inter-areal cortical projection neurons are located in all cortical layers and form a heterogeneous population, which send their axon across cortical areas, both within and across hemispheres. How this diversity emerges during development remains largely unknown. Here, we address this question by linking the connectome and transcriptome of developing cortical projection neurons and show distinct maturation paces in neurons with distinct projections, which correlates with the sequential development of sensory and motor functions during postnatal period.

Many decisions under uncertainty entail dynamic belief updating: multiple pieces of evidence informing about the state of the environment are accumulated across time to infer the environmental state, and choose a corresponding action. Traditionally, this process has been conceptualized as a linear and perfect (i.e., without loss) integration of sensory information along purely feedforward sensory-motor pathways. Yet, natural environments can undergo hidden changes in their state, which requires a non-linear accumulation of decision evidence that strikes a tradeoff between stability and flexibility in response to change. How this adaptive computation is implemented in the brain has remained unknown. In this talk, I will present an approach that my laboratory has developed to identify evidence accumulation signatures in human behavior and neural population activity (measured with magnetoencephalography, MEG), across a large number of cortical areas. Applying this approach to data recorded during visual evidence accumulation tasks with change-points, we find that behavior and neural activity in frontal and parietal regions involved in motor planning exhibit hallmarks signatures of adaptive evidence accumulation. The same signatures of adaptive behavior and neural activity emerge naturally from simulations of a biophysically detailed model of a recurrent cortical microcircuit. The MEG data further show that decision dynamics in parietal and frontal cortex are mirrored by a selective modulation of the state of early visual cortex. This state modulation is (i) specifically expressed in the alpha frequency-band, (ii) consistent with feedback of evolving belief states from frontal cortex, (iii) dependent on the environmental volatility, and (iv) amplified by pupil-linked arousal responses during evidence accumulation. Together, our findings link normative decision computations to recurrent cortical circuit dynamics and highlight the adaptive nature of decision-related long-range feedback processing in the brain.

In systems neuroscience, datasets are multimodal and include data-streams of various origins: multichannel electrophysiology, 1- or 2-p calcium imaging, behavior, etc. Often, the exact nature of data streams are unique to each lab, if not each project. Analyzing these datasets in an efficient and open way is crucial for collaboration and reproducibility. In this combined webinar and tutorial, Adrien Peyrache and Guillaume Viejo will present Pynapple, a Python-based data analysis pipeline for systems neuroscience. Designed for flexibility and versatility, Pynapple allows users to perform cross-modal neural data analysis via a common programming approach which facilitates easy sharing of both analysis code and data.

Change is ubiquitous in living beings. In particular, the connectome and neural representations can change. Nevertheless behaviors and memories often persist over long times. In a standard model, associative memories are represented by assemblies of strongly interconnected neurons. For faithful storage these assemblies are assumed to consist of the same neurons over time. We propose a contrasting memory model with complete temporal remodeling of assemblies, based on experimentally observed changes of synapses and neural representations. The assemblies drift freely as noisy autonomous network activity or spontaneous synaptic turnover induce neuron exchange. The exchange can be described analytically by reduced, random walk models derived from spiking neural network dynamics or from first principles. The gradual exchange allows activity-dependent and homeostatic plasticity to conserve the representational structure and keep inputs, outputs and assemblies consistent. This leads to persistent memory. Our findings explain recent experimental results on temporal evolution of fear memory representations and suggest that memory systems need to be understood in their completeness as individual parts may constantly change.

In systems neuroscience, datasets are multimodal and include data-streams of various origins: multichannel electrophysiology, 1- or 2-p calcium imaging, behavior, etc. Often, the exact nature of data streams are unique to each lab, if not each project. Analyzing these datasets in an efficient and open way is crucial for collaboration and reproducibility. In this combined webinar and tutorial, Adrien Peyrache and Guillaume Viejo will present Pynapple, a Python-based data analysis pipeline for systems neuroscience. Designed for flexibility and versatility, Pynapple allows users to perform cross-modal neural data analysis via a common programming approach which facilitates easy sharing of both analysis code and data.

Peripersonal space (PPS) defines the portion of space where interactions between our body and the external environment more likely occur. There is no physical boundary defining the PPS with respect to the extrapersonal space, but PPS is continuously constructed by a dedicated neural system integrating external stimuli and tactile stimuli on the body, as a function of their potential interaction. This mechanism represents a primary interface between the individual and the environment. In this talk, I will present most recent evidence and highlight the current debate about the neural and computational mechanisms of PPS, its main functions and properties. I will discuss novel data showing how PPS dynamically shapes to optimize body-environment interactions. I will describe a novel electrophysiological paradigm to study and measure PPS, and show how this has been used to search for a basic marker of potentials of self-environment interaction in newborns and patients with disorders of consciousness. Finally, I will discuss how PPS is also involved in, and in turn shaped by, social interactions. Under these acceptances, I will discuss how PPS plays a key role in self-consciousness.

Humans, as a social species, have an increased ability to detect and perceive visual elements involved in social exchanges, such as faces and eyes. The gaze, in particular, conveys information crucial for social interactions and social cognition. Researchers have hypothesized that in order to engage in dynamic face-to-face communication in real time, our brains must quickly and automatically process the direction of another person's gaze. There is evidence that direct gaze improves face encoding and attention capture and that direct gaze is perceived and processed more quickly than averted gaze. These results are summarized as the "direct gaze effect". However, in the recent literature, there is evidence to suggest that the mode of visual information processing modulates the direct gaze effect. In this presentation, I argue that top-down processing, and specifically the relevance of eye features to the task, promotes the early preferential processing of direct versus indirect gaze. On the basis of several recent evidences, I propose that low task relevance of eye features will prevent differences in eye direction processing between gaze directions because its encoding will be superficial. Differential processing of direct and indirect gaze will only occur when the eyes are relevant to the task. To assess the implication of task relevance on the temporality of cognitive processing, we will measure event-related potentials (ERPs) in response to facial stimuli. In this project, instead of typical ERP markers such as P1, N170 or P300, we will measure lateralized ERPs (lERPS) such as lateralized N170 and N2pc, which are markers of early face encoding and attentional deployment respectively. I hypothesize that the relevance of the eye feature task is crucial in the direct gaze effect and propose to revisit previous studies, which had questioned the existence of the direct gaze effect. This claim will be illustrate with different past studies and recent preliminary data of my lab. Overall, I propose a systematic evaluation of the role of top-down processing in early direct gaze perception in order to understand the impact of context on gaze perception and, at a larger scope, on social cognition.

Exploration of genome organization and function in the HIV infected brain is critical to aid in the understanding and development of treatments for HIV-associated neurocognitive disorder (HAND). Here, we applied a multiomic approach, including single nuclei transcriptomics, cell-type specific Hi-C 3D genome mapping, and viral integration site sequencing (IS-seq) to frontal lobe tissue from HIV-infected individuals with encephalitis (HIVE) and without encephalitis (HIV+). We observed reorganization of open/repressive (A/B) compartment structures in HIVE microglia encompassing 6.4% of the genome with enrichment for regions containing interferon (IFN) pathway genes. 3D genome remodeling was associated with transcriptomic reprogramming, including down-regulation of cell adhesion and synapse-related functions and robust activation of IFN signaling and cell migratory pathways, and was recapitulated by IFN-g stimulation of cultured microglial cells. Microglia from HIV+ brains showed, to a lesser extent, similar transcriptional alterations. IS-seq recovered 1,221 integration sites in the brain that were enriched for chromosomal domains newly mobilized into a permissive chromatin environment in HIVE microglia. Viral transcription, which was detected in 0.003% of all nuclei in HIVE brain, occurred in a subset of highly activated microglia that drove differential expression in HIVE. Thus, we observed a dynamic interrelationship of interferon-associated 3D genome and transcriptome remodeling with HIV integration and transcription in the brain.

Working memory involves the short-term maintenance of information and is critical in many tasks. The neural circuit dynamics underlying working memory remain poorly understood, with different aspects of prefrontal cortical (PFC) responses explained by different putative mechanisms. By mathematical analysis, numerical simulations, and using recordings from monkey PFC, we investigate a critical but hitherto ignored aspect of working memory dynamics: information loading. We find that, contrary to common assumptions, optimal information loading involves inputs that are largely orthogonal, rather than similar, to the persistent activities observed during memory maintenance. Using a novel, theoretically principled metric, we show that PFC exhibits the hallmarks of optimal information loading and we find that such dynamics emerge naturally as a dynamical strategy in task-optimized recurrent neural networks. Our theory unifies previous, seemingly conflicting theories of memory maintenance based on attractor or purely sequential dynamics, and reveals a normative principle underlying the widely observed phenomenon of dynamic coding in PFC.

The purpose of this event is twofold: to raise awareness of careers in AI to neuroscience postgraduate and Early Career Researchers (ECRs), and to give the chance for commercial organisations to acquire and diversify their talent pool. We know that our early career members are highly motivated and interested in different career pathways, and wish to help them fulfil their ambitions. This will be a hybrid event held in person at Arca Blanca, Covent Garden, London and also available online. FREE for BNA members!

To generate brain circuits that are both flexible and stable requires the coordination of powerful developmental mechanisms acting at different scales, including activity-dependent synaptic plasticity and changes in single neuron properties. The brain prepares to efficiently compute information and reliably generate behavior during early development without any prior sensory experience but through patterned spontaneous activity. After the onset of sensory experience, ongoing activity continues to modify sensory circuits, and plays an important functional role in the mature brain. Using quantitative data analysis, experiment-driven theory and computational modeling, I will present a framework for how neural circuits are built and organized during early postnatal development into functional units, and how they are modified by intact and perturbed sensory-evoked activity. Inspired by experimental data from sensory cortex, I will then show how neural circuits use the resulting non-random connectivity to flexibly gate a network’s response, providing a mechanism for routing information.

Inhibition of seizures can come from expected – and surprising – sources. In this talk I will explore circuit elements, both within and external to the temporal lobe, which may be able inhibit hippocampal seizures, and how specific aspects of intervention strategies can be critical for outcomes. We’ll discuss novel sources of inhibition within the hippocampus, the cerebellum as a potential target, and closed-loop optimization of stimulation parameters

Efficient coding has served as a guiding principle in understanding the neural code. To date, however, it has been explored mainly in the context of peripheral sensory cells with simple tuning curves. By contrast, ‘deeper’ neurons such as grid cells come with more complex tuning properties which imply a different, yet highly efficient, strategy for representing information. I will show that a highly efficient code is not specific to a population of neurons with finely tuned response properties: it emerges robustly in a shallow network with random synapses. Here, the geometry of population responses implies that optimality obtains from a tradeoff between two qualitatively different types of error: ‘local’ errors (common to classical neural population codes) and ‘global’ (or ‘catastrophic’) errors. This tradeoff leads to efficient compression of information from a high-dimensional representation to a low-dimensional one. After describing the theoretical framework, I will use it to re-interpret recordings of motor cortex in behaving monkey. Our framework addresses the encoding of (sensory) information; if time allows, I will comment on ongoing work that focuses on decoding from the perspective of efficient coding.