Confinement
confinement
Locomotion of Helicobacter pylori: Cell geometry and active confinement
Aligning particles in confinement
Mixed active-passive suspensions: from particle entrainment to spontaneous demixing
Understanding the properties of active matter is a challenge which is currently driving a rapid growth in soft- and bio-physics. Some of the most important examples of active matter are at the microscale, and include active colloids and suspensions of microorganisms, both as a simple active fluid (single species) and as mixed suspensions of active and passive elements. In this last class of systems, recent experimental and theoretical work has started to provide a window into new phenomena including activity-induced depletion interactions, phase separation, and the possibility to extract net work from active suspensions. Here I will present our work on a paradigmatic example of mixed active-passive system, where the activity is provided by swimming microalgae. Macro- and micro-scopic experiments reveal that microorganism-colloid interactions are dominated by rare close encounters leading to large displacements through direct entrainment. Simulations and theoretical modelling show that the ensuing particle dynamics can be understood in terms of a simple jump-diffusion process, combining standard diffusion with Poisson-distributed jumps. Entrainment length can be understood within the framework of Taylor dispersion as a competition between advection by the no-slip surface of the cell body and microparticle diffusion. Building on these results, we then ask how external control of the dynamics of the active component (e.g. induced microswimmer anisotropy/inhomogeneity) can be used to alter the transport of passive cargo. As a first step in this direction, we study the behaviour of mixed active-passive systems in confinement. The resulting spatial inhomogeneity in swimmers’ distribution and orientation has a dramatic effect on the spatial distribution of passive particles, with the colloids accumulating either towards the boundaries or towards the bulk of the sample depending on the size of the container. We show that this can be used to induce the system to de-mix spontaneously.
The physics of cement cohesion
Cement is the main binding agent in concrete, literally gluing together rocks and sand into the most-used synthetic material on Earth. However, cement production is responsible for significant amounts of man- made greenhouse gases—in fact if the cement industry were a country, it would be the third largest emitter in the world. Alternatives to the current, environmentally harmful cement production process are not available essentially because the gaps in fundamental understanding hamper the development of smarter and more sustainable solutions. The ultimate challenge is to link the chemical composition of cement grains to the nanoscale physics of the cohesive forces that emerge when mixing cement with water. Cement nanoscale cohesion originates from the electrostatics of ions accumulated in a water-based solution between like-charged surfaces but it is not captured by existing theories because of the nature of the ions involved and the high surface charges. Surprisingly enough, this is also the case for unexplained cohesion in a range of colloidal and biological matter. About one century after the early studies of cement hydration, we have quantitatively solved this notoriously hard problem and discovered how cement cohesion develops during hydration. I will discuss how 3D numerical simulations that feature a simple but molecular description of ions and water, together with an analytical theory that goes beyond the traditional continuum approximations, helped us demonstrate that the optimized interlocking of ion-water structures determine the net cohesive forces and their evolution. These findings open the path to scientifically grounded strategies of material design for cements and have implications for a much wider range of materials and systems where ionic water-based solutions feature both strong Coulombic and confinement effects, ranging from biological membranes to soils. Construction materials are central to our society and to our life as humans on this planet, but usually far removed from fundamental science. We can now start to understand how cement physical-chemistry determines performance, durability and sustainability.
“Life in a Tight Spot: How Bacteria Move in Heterogeneous Media”
Bacterial motility is central to processes in agriculture, the environment, and medicine. While motility is typically studied in homogeneous environments, many bacterial habitats—e.g., soils, sediments, and biological gels/tissues—are heterogeneous porous media. Here, through studies of E. coli in transparent 3D porous media, we demonstrate that confinement in a heterogeneous medium fundamentally alters motility. In particular, we show how the paradigm of run-and-tumble motility is dramatically altered by pore-scale confinement, both for cells performing undirected motion and those performing chemotaxis, directed motion in response to a chemical stimulus. Our porous media also enable precisely structured multi-cellular communities to be 3D printed. Using this capability, we show how confinement-dependent chemotaxis enables populations to stabilize large-scale perturbations in their overall morphology. Together, our work thus reveals new principles to predict and control the behavior of bacteria, and active matter in general, in heterogeneous environments.
Distributed encoding of motor commands mediates response to environmental confinement and escape from predators
FENS Forum 2024