Ecology seminars

Sanne Evers introduces the first forecasting challenge organized by the European Ecological Forecasting Initiative. The challenge uses long-running observations from Doñana National Park in southern Spain to support short-term predictions of vegetation indices and the abundance of multiple shrub species. Forecasting these changes can inform habitat management, productivity assessments and conservation decisions under climatic and hydrological pressures. The seminar explains why Doñana’s range of habitats and monitoring infrastructure offer a useful setting for comparing predictions before new observations become available. It also discusses lessons from developing the challenge and planned next steps, with participation encouraged across ecological disciplines and levels of forecasting experience.

Partha Dasgupta considers how economic progress should be measured during an ecological crisis. Drawing on his work on natural capital, he examines an approach to economics that assigns value to nature alongside other assets. The discussion asks how changing the way economies value the natural world could change the way they protect it. Dasgupta connects economic measurement with environmental sustainability and the challenge of recognising nature’s contribution to human well-being.

A major unresolved question in microbiome research is whether the complex ecological patterns observed in surveys of natural communities can be explained and predicted by fundamental, quantitative principles. Bridging theory and experiment is hampered by the multiplicity of ecological processes that simultaneously affect community assembly and a lack of theoretical tools for modeling diverse ecosystems. Here, I will present a simple ecological model of microbial communities that reproduces large-scale ecological patterns observed across multiple natural and experimental settings including compositional gradients, clustering by environment, diversity/harshness correlations, and nestedness. Surprisingly, our model works despite having a “random metabolisms” and “random consumer preferences”. This raises the natural of question of why random ecosystems can describe real-world experimental data. In the second, more theoretical part of the talk, I will answer this question by showing that when a community becomes diverse enough, it will always self-organize into a stable state whose properties are well captured by a “typical random ecosystems”.

My research interests are centered on animal ecology, and more specifically include the following areas: visual ecology, behavioral ecology, and conservation biology, as well as the interactions between them. My research is question-driven. I answer my questions in a comprehensive manner, using a combination of empirical, theoretical, and comparative approaches. My model species are usually birds, but I have also worked with fish, mammals, amphibians, and insects. ​I was fortunate to enrich my education by attending Universities in different parts of the world. I did my undergraduate, specialized in ecology and biodiversity, at the "Universidad Nacional de Cordoba", Argentina. My Ph.D. was in animal ecology and conservation biology at the "Universidad Complutense de Madrid", Spain. My two post-docs were focused on behavioral ecology; the first one at University of Oxford (United Kingdom), and the second one at University of Minnesota (USA). I was an Assistant Professor at California State University Long Beach for almost six years. I am now a Full Professor of Biological Sciences at Purdue University.

Many animals are highly visual. They view their world through photoreceptors sensitive to different wavelengths of light. Animal survival and optimal behavioral performance may select for varying photoreceptor sensitivities depending on animal habitat or visual tasks. Our goal is to understand what drives visual diversity from both an evolutionary and molecular perspective. The group of more than 2000 cichlid fish species are an ideal system for examining such diversity. Cichlid are a colorful group of fresh water fishes. They have undergone adaptive radiation throughout Africa and the new world and occur in rivers and lakes that vary in water clarity. They are also behaviorally complex, having diverse behaviors for foraging, mate choice and even parental care. As a result, cichlids have highly diverse visual systems with cone sensitivities shifting by 30-90 nm between species. Although this group has seven cone opsin genes, individual species differ in which subset of the cone opsins they express. Some species show developmental shifts in opsin expression, switching from shorter to longer wavelength opsins through ontogeny. Other species modify that developmental program to express just one of the sets, causing the large sensitivity differences. Cichlids are therefore natural mutants for opsin expression. We have used cichlid diversity to explore the relationship between visual sensitivities and ecology. We have also exploited the genomic power of the cichlid system to identify genes and mutations that cause opsin expression shifts. Ultimately, our goal is to learn how different cichlid species see the world and whether differences matter. Behavioral experiments suggest they do indeed use color vision to survive and thrive. Cichlids therefore are a unique model for exploring how visual systems evolve in a changing world.

Many aspects of collective behavior depend on interactions between conspecifics. This is especially true for the collective motion of locusts, which swarm in millions while maintaining synchrony among individuals. However, whether locusts share and maintain the same socio-behavioral patterns – between groups, individuals and situations – remains an open question. Studying marching locusts under lab conditions, we found that (1) different groups behave differently; (2) locusts within a group homogenize their behavior; and (3) individuals have different socio-behavioral tendencies and context-dependent states. These variability levels suggest that behavioral differences within and among individuals exist, affect others, and shape the collective behavior of the entire group.

It has long been appreciated (and celebrated) that certain species have sensory capabilities that humans do not share, for example polarization, ultraviolet, and infrared vision. What is less appreciated however, is that our position as terrestrial human scientists can significantly affect our study of animal senses and signals, even within modalities that we do share. For example, our acute vision can lead us to over-interpret the relevance of fine patterns in animals with coarser vision, and our Cartesian heritage as scientists can lead us to divide sensory modalities into orthogonal parameters (e.g. hue and brightness for color vision), even though this division may not exist within the animal itself. This talk examines two cases from marine visual ecology where a reconsideration of our biases as sharp-eyed Cartesian land mammals can help address questions in visual ecology. The first case examines the enormous variation in visual acuity among animals with image-forming eyes, and focuses on how acknowledging the typically poorer resolving power of animals can help us interpret the function of color patterns in cleaner shrimp and their client fish. The second case examines the how the typical human division of polarized light stimuli into angle and degree of polarization is problematic, and how a physiologically relevant interpretation is both closer to the truth and resolves a number of issues, particularly when considering the propagation of polarized light

We want to understand how the visual system detects and tracks salient stimuli in the environment to initiate and guide specific behaviors (i.e., visual neuroethology). Predator avoidance and prey capture are central selection pressures of animal evolution. Mice use vision to detect aerial predators and hunt insects. I will discuss studies from my group that identify specific circuits and pathways in the early visual system (i.e., the retina and its subcortical targets) mediating predator avoidance and prey capture in mice. Our results highlight the importance of subcellular visual processing in the retina and the alignment of viewing strategies with region- and cell-type-specific retinal ganglion cell projection patterns to the brain.

Multi-agent reinforcement learning (MARL) has recently shown great promise as an approach to networked system control. Arguably, one of the most difficult and important tasks for which large scale networked system control is applicable is common-pool resource (CPR) management. Crucial CPRs include arable land, fresh water, wetlands, wildlife, fish stock, forests and the atmosphere, of which proper management is related to some of society’s greatest challenges such as food security, inequality and climate change. This talk will consist of three parts. In the first, we will briefly look at climate change and how it poses a significant threat to life on our planet. In the second, we will consider the potential of multi-agent systems for climate change mitigation and adaptation. And finally, in the third, we will discuss recent research from InstaDeep into better understanding the behaviour of networked MARL systems used for CPR management. More specifically, we will see how the tools from empirical game-theoretic analysis may be harnessed to analyse the differences in networked MARL systems. The results give new insights into the consequences associated with certain design choices and provide an additional dimension of comparison between systems beyond efficiency, robustness, scalability and mean control performance.

Microbes make up the vast majority of the tree of life. While we know very little about most microbial species, large-scale sequencing is giving us glimpses of the diversity that exists both within species and in ecosystems. The challenge now is to find the patterns in this diversity and understand them. This session features provocative talks on attempts to meet that challenge.

Zebrafish and cichlids are popular models in visual neuroscience, due to their amenability to advanced research tools and their diverse set of visually guided behaviours. It is often asserted that animals’ neural systems are adapted to the statistical regularities in their natural environments, but relatively little is known about the visual spatiotemporal features in the underwater habitats that nurtured these fish. To address this gap, we have embarked on an examination of underwater habitats in northeastern India and Lake Tanganyika (Zambia), where zebrafish and cichlids are native. In this talk, we will describe the methods used to conduct a series of field measurements and generate a large and diverse dataset of these underwater habitats. We will present preliminary results suggesting that the demands for visually-guided navigation differ between these underwater habitats and the terrestrial habitats characteristic of other model species.