Seminars

Jan Kosinski explains how AlphaFold-style methods predict protein complexes and why their reliance on evolutionary information makes interactions between host and pathogen proteins especially difficult. The talk reviews large-scale studies, interpreting both successful predictions and failures rather than treating reported success rates as universal performance. It then examines ways to improve predictions through broader sampling, altered sequence alignments and experimental restraints, including crosslinking mass spectrometry, with influenza A virus as a worked research example. The session is suitable for students and researchers interested in host-pathogen interactions and structural bioinformatics; basic knowledge of protein structures and sequence alignments is useful, but prior AlphaFold experience is unnecessary.

Navigation and memory require coordination between map-like allocentric representations and body-centered egocentric actions. Aaron Wilber examines how the parietal–retrosplenial–anterior thalamic–hippocampal network performs these transformations, and how disrupted coordination contributes to spatial deficits in aging and Alzheimer’s disease. Rat sequence-task experiments reveal bidirectional hippocampal–parietal interactions across route-centered, place and egocentric representations. Because that task does not isolate reference-frame use, the laboratory developed a freely available task separating egocentric, allocentric and transformation conditions. Validation indicates that parietal cortex and anterior thalamus are required for transformation; ongoing work examines population states associated with each condition. The talk then connects impaired hippocampal–cortical communication during sleep to navigation deficits in 3xTg-AD mice, reporting recovery of circuit function and cognition after early, circuit-targeted 40 Hz entrainment. Related investigations examine this network during waking navigation. In TgF344-AD rats, egocentric impairments appear before transformation deficits, addressing the shortage of rodent studies of reference-frame coordination in Alzheimer’s disease.

How do humans stabilize an inverted pendulum, and why does a balanced pole eventually fall? Drawing on 25 years of fingertip pole-balancing research, this talk examines neural correction delays: longer poles move more slowly relative to the nervous system’s response time. Delay-differential models can stabilize the upright position, yet skilled people still experience falls. The proposed explanation is microchaos arising from interactions among delay, sensory dead zones and frequency-dependent force encoding. A region of transient falling solutions lies next to stable microchaotic dynamics. Such microchaos is absent in virtual frontal-plane balancing tasks, while models of standing postural sway lack the corresponding transient regime. The comparison suggests that human falls, unlike pole falls, are more plausibly associated with medical events or slips and trips.

Robot missions require both collision-free trajectories and logical task ordering, such as collecting a resource before entering a restricted region. Augmented graphs of convex sets combine continuous trajectory optimization and discrete task sequencing in one problem. A layered graph constructed from an exact convex partition of free space selects an optimal task order and trajectory through a shortest-path calculation, exact up to finite Bézier parameterization. Its structure corresponds to Bellman–Held–Karp dynamic programming for the travelling-salesperson problem, retaining singly exponential worst-case complexity and improving exponentially on general temporal-logic tools. A library of specifications covers ordered collection, alternative keys, combined prerequisites, timing and conditional logic with correctness guarantees. Numerical benchmarks demonstrate exponential speedups and near-global optimality. Possible extensions include moving environments, safety-aware planning with conformal prediction sets and a large galactic-survey benchmark.

Beth Gardner introduces spatial capture-recapture models for estimating wildlife population dynamics and movement. The seminar considers observations from camera traps and genetic identification using hair or scat, showing how the modeling framework can accommodate different sampling methods, time scales and movement processes. Gardner develops the Bayesian formulation through worked examples in R with NIMBLE, then discusses extensions and audience questions. The methods support estimates of demographic rates, spatial distributions and habitat relationships for conservation and management. The organizer explicitly schedules this occurrence at 15:00 Eastern time, rather than the series’ usual time.

To orchestrate complex behaviors in mammals, the cerebral cortex must continuously transmit its processing results to subcortical regions. While internal cortical processing relies on highly selective sparse codes, these descending cortical output streams employ an enigmatic dense code, characterized by high firing rates and low feature selectivity. This dense population code presents a profound paradox: how can downstream regions extract precise, cognitively relevant signals when most cortical output neurons can be active at any moment? We address this paradox by testing the hypothesis that cortex does not lose information when switching to a dense code. Instead, it utilizes a mechanism for sparse-to-dense coding transformations discovered by my laboratory: thalamocortical synapses target specifically the dendritic initiation zone for calcium action potentials (APs), which enables cortical output neurons to transmit multiple information streams simultaneously via a multiplexed 1-2-3 AP syntax. I will provide first evidence that this remarkable synaptic specificity and coding syntax generalize across long-range pathways. Information coupling via an anatomically and biophysically distinct dendritic nexus may hence be a ubiquitous mechanism for sparse-to-dense coding transformations in cortex. Dissecting these mechanistic origins of cortical output streams is only now possible due to a unique in vivo – in silico approach, perfected over two decades, that my laboratory developed for bridging the gaps between dendritic and population-level computations

Yixuan He (Arizona State University) considers graph neural networks for social, financial and biological networks in which edge signs and directions contain information needed for clustering and prediction. After an introduction to graph neural networks, the talk explains how signed and directed methods preserve relationships lost when every connection is treated as unsigned and undirected. The seminar then asks when a representation learned before the final task can transfer to a different graph or to a setting with few labels. Two theoretical perspectives address transfer across graph domains and the use of link prediction for linear community detection. TopoDIG and TopoSIGN combine encoders that preserve edge structure with persistent topological features, enabling pre-training and prompt-based adaptation on directed and signed networks.

Antonio Ocello tests the idea that heavy-tailed noise improves diffusion and flow-based generative models by matching heavy-tailed data and encouraging diverse samples. Replacing Gaussian noise also changes the estimation task. A combined theoretical and experimental study derives sampling-error bounds for representative heavy- and light-tailed diffusion models, finding that heavy-tailed noise makes statistical estimation harder and produces less favourable bounds. Experiments with synthetic and real data recover the predicted trade-off. The results question whether heavy-tailed initialization reliably improves exploration of rare regions. This is joint work with Hamza Cherkaoui and Hélène Halconruy. Online via Microsoft Teams. Friday 2 October 2026 at 15:30 CEST / 13:30 UTC / 14:30 BST (Europe/Paris). Follow the Microsoft Teams link beneath this occurrence on the seminar page; the public route offers browser or app access. Ocello is affiliated with ENSAE Paris. Organized by GAMEX — Generative AI Modeling for Extreme Events, with GLE²N and CIRCE support; the series welcomes scientific exchange beyond the network.

Srinivasan Keshav (University of Cambridge) presents an interface designed to help ecologists use AI for remote sensing despite unfamiliarity with embeddings and algorithms. The Tessera Embeddings Explorer lets practitioners privately explore a region of interest, create habitat maps and perform regressions using their domain expertise and ground-truth knowledge. The talk demonstrates the tool and explains the design principles and the software architecture that follows from them, connecting usable ecological workflows with AI representations. Keshav is the Robert Sansom Professor of Computer Science at Cambridge.

Picower Institute Colloquium on the Brain and Cognition featuring Christopher Harvey, PhD, of Harvard University, held in Singleton Auditorium (46-3002) at MIT Building 46, 43 Vassar Street.

Alok Puranik (Jane Street) examines data mixing for large language models: allocating model capacity and computation among training sources. A small model’s preferred data mix may differ from that of a larger model, yet the cost of large-model training forces many decisions to depend on smaller experiments. Scaling laws can predict performance as size and computation increase only when trends remain stable or change predictably. The talk uses experiments from Puranik’s work and frontier laboratories to examine data-mix questions that violate these assumptions, explain why small-scale results can mislead, and explore better methods for choosing training data. His research at Jane Street concerns scaling laws for sequence models in trading.

Scott J. Russo examines how chronic psychosocial stress alters communication between the immune system and the brain in depression and anxiety. Human observations and mouse experiments connect persistent increases in circulating monocytes and inflammatory signals with stress-related illness. The talk describes stress-responsive neurons that project to bone marrow and regulate monocyte production, release and trafficking. It also considers how stress disrupts the blood–brain barrier, allowing peripheral inflammatory proteins to affect reward regions such as the nucleus accumbens. Together, these findings examine how peripheral immune cells act at the neurovascular interface to change brain circuits and behaviour, providing potential mechanisms relevant to treatment-resistant mood disorders. Online via Rutgers Brain Health Institute Zoom. Thursday 1 October 2026, 12:00–13:00 EDT (America/New_York; UTC−4). Open the organizer’s event page and follow its Zoom link; the meeting ID and passcode are supplied there. Hosted by Yong Kim as part of the BHI Plenary Seminar Series. This listing advertises the verified remote option.

Ivo D. Dinov examines augmented intelligence as a partnership between people and computational systems. The talk traces the technical and philosophical development of neural networks, then introduces complex-time, or kime, representations and the inference methods they support. Applications include medical imaging, healthcare and economic forecasting. It also considers the academic mission, societal consequences of AI and tensions between rapid technical development and human values, framing mathematical AI methods as extensions of human reasoning. Free hybrid seminar hosted by Wayne State University's Institute for AI and Data Science, AIDaS: CAD Seminar Series. Wednesday 30 September 2026, 14:30–15:30 EDT (America/Detroit; UTC−4). Attend in Room 1146, Faculty/Administration Building, 656 W. Kirby, Detroit, MI 48202, USA, or use the Zoom link on the official event page. Researchers, practitioners, students and faculty are welcome; the organizer encourages in-person attendance.

Navid Azizan presents methods that make neural models obey physical, safety and operational constraints at deployment. Hard-constrained neural networks, or HardNets, enforce input-dependent constraints by construction while preserving universal approximation within the feasible function class. Applications include models of chaotic dynamics with bounded trajectories, energy-constrained operator learning, safe reinforcement learning and control with formal guarantees. The talk then turns to enforcing constraints during sampling from pretrained diffusion and flow-matching models. Formulating generation as trajectory optimization allows receding-horizon control to guide outputs toward feasibility without retraining or imposing excessive restrictions on the sampling process. Examples from fluid dynamics, robot planning and control, PDE control and language-guided image editing illustrate how constraints can define admissible behavior while retaining expressive learning and generation.

Lenka Zdeborová introduces the Rules-and-Facts model, in which some observations follow a shared rule while others are isolated exceptions requiring memorization. The framework studies when a learner can acquire the rule and retain those exceptions simultaneously. Its results emphasize how capacity is organized and deployed, rather than capacity alone. The talk examines how regularization and the geometry of kernels or learned feature maps can reserve resources for memorization without undermining rule learning. It connects the balance between abstraction and memory to architectural and algorithmic choices, providing a theoretical account of neural networks that both generalize and recall specific facts.

UCL Department of Neuroinflammation Seminar by Professor Emad Moeendarbary (Professor of Cell Mechanics and Mechanobiology, UCL Mechanical Engineering) on how biophysical factors such as substrate stiffness and axon geometry regulate oligodendrocyte behavior and myelin formation, presenting the AxoMetic in vitro myelination platform for discovery of remyelinating therapies.

Charlie Wilson examines how artificial intelligence affects energy transitions and carbon emissions, from data centres to the wider economy. The talk evaluates evidence behind competing claims, identifies optimism bias in assessments extending beyond data-centre electricity use, and presents research quantifying AI’s effects on global emissions pathways to 2050. It considers how aligning AI development with climate action changes the feasibility and cost of meeting long-term climate targets. Wilson is Professor at the Environmental Change Institute, University of Oxford. Takeshi Kuramochi provides commentary; Naoko Shimazu moderates. Online via Zoom Webinar. Wednesday 30 September 2026, 14:00–15:00 JST (Asia/Tokyo; UTC+9). Public advance registration is required through the organizer’s event page. The lecture is in English with Japanese interpretation. Organized by Tokyo College, The University of Tokyo Institutes for Advanced Study.

MIT Biology Colloquium Series talk by Peter Koo (Cold Spring Harbor Laboratory), hosted by Yunha Hwang, on using AI to learn the gene regulatory code.

Mansi Chhajed examines how the move from home sleep patterns to disrupted hospital sleep relates to cognitive outcomes after surgery. The session combines longitudinal sleep measurements with clinical assessments of postoperative delirium to identify baseline markers of vulnerability and consider practical ways to improve recovery. It connects sleep architecture, biological and environmental influences, and preoperative risk with proactive, sleep-informed patient care. Chhajed is a Clinical Research Coordinator at Massachusetts General Hospital. Online via Zoom Webinar. Tuesday 29 September 2026 at 14:00 ET / 13:00 CT (America/New_York; EDT, UTC−4). Organized by the Sleep Research Society — Virtual Seminar Series. Follow Register Today on the organizer's page to the event-specific Zoom form, which requests name and email. The form is publicly accessible; advance registration supplies webinar access.

Vanessa Siffredi explores why the corpus callosum is central to typical brain development, yet some children born without it or with callosal abnormalities develop comparably to their peers. The talk connects callosal structure and communication between hemispheres with cognition, attention, executive function, memory, language and socio-emotional development. Structural and functional neuroimaging studies of typical development and callosal dysgenesis examine how developing brains compensate for alterations in this major white-matter pathway. Siffredi is affiliated with CHUV and UNIL; Carole Guedj chairs the seminar. Hybrid: Auditoire de pédiatrie Fred Bamatter, HUG, Hôpital des Enfants, Geneva; online via Zoom. Tuesday 29 September 2026, 09:30–10:30 CEST (Europe/Zurich; UTC+2), followed by CIBM news and networking until 11:00. Organized by CIBM Center for Biomedical Imaging — Breakfast and Science. In-person attendance is free without registration. Remote attendees must register through the Zoom link on the event page and select the 29 September occurrence.