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SeminarNeuroscience

Finding needles in the neural haystack: unsupervised analyses of noisy data

Marine Schimel & Kris Jensen
University of Cambridge, Department of Engineering
Dec 1, 2021

In modern neuroscience, we often want to extract information from recordings of many neurons in the brain. Unfortunately, the activity of individual neurons is very noisy, making it difficult to relate to cognition and behavior. Thankfully, we can use the correlations across time and neurons to denoise the data we record. In particular, using recent advances in machine learning, we can build models which harness this structure in the data to extract more interpretable signals. In this talk, we present two such methods as well as examples of how they can help us gain further insights into the neural underpinnings of behavior.

SeminarNeuroscience

Representation transfer and signal denoising through topographic modularity

Barna Zajzon
Morrison lab, Forschungszentrum Jülich, Germany
Nov 4, 2021

To prevail in a dynamic and noisy environment, the brain must create reliable and meaningful representations from sensory inputs that are often ambiguous or corrupt. Since only information that permeates the cortical hierarchy can influence sensory perception and decision-making, it is critical that noisy external stimuli are encoded and propagated through different processing stages with minimal signal degradation. Here we hypothesize that stimulus-specific pathways akin to cortical topographic maps may provide the structural scaffold for such signal routing. We investigate whether the feature-specific pathways within such maps, characterized by the preservation of the relative organization of cells between distinct populations, can guide and route stimulus information throughout the system while retaining representational fidelity. We demonstrate that, in a large modular circuit of spiking neurons comprising multiple sub-networks, topographic projections are not only necessary for accurate propagation of stimulus representations, but can also help the system reduce sensory and intrinsic noise. Moreover, by regulating the effective connectivity and local E/I balance, modular topographic precision enables the system to gradually improve its internal representations and increase signal-to-noise ratio as the input signal passes through the network. Such a denoising function arises beyond a critical transition point in the sharpness of the feed-forward projections, and is characterized by the emergence of inhibition-dominated regimes where population responses along stimulated maps are amplified and others are weakened. Our results indicate that this is a generalizable and robust structural effect, largely independent of the underlying model specificities. Using mean-field approximations, we gain deeper insight into the mechanisms responsible for the qualitative changes in the system’s behavior and show that these depend only on the modular topographic connectivity and stimulus intensity. The general dynamical principle revealed by the theoretical predictions suggest that such a denoising property may be a universal, system-agnostic feature of topographic maps, and may lead to a wide range of behaviorally relevant regimes observed under various experimental conditions: maintaining stable representations of multiple stimuli across cortical circuits; amplifying certain features while suppressing others (winner-take-all circuits); and endow circuits with metastable dynamics (winnerless competition), assumed to be fundamental in a variety of tasks.

ePosterNeuroscience

TSG-DDT: Time-Series Generative Denoising Diffusion Transformers

Marco Zurdo-Tabernero, Pablo Enrique-Guillem, Ángel Canal-Alonso, Guillermo Hernández, Angélica González-Arrieta, Juan Manuel Corchado

Bernstein Conference 2024

ePosterNeuroscience

An adaptive analysis pipeline for automated denoising and evaluation of high-density electrophysiological recordings

Anoushka Jain,Alexander Kleinjohann,Severin Graff,Kerstin Doerenkamp,Björn Kampa,Sonja Grün,Simon Musall

COSYNE 2022

ePosterNeuroscience

Real-time neural network denoising of 3D optogenetic connectivity maps

Benjamin Antin,Marta Gajowa,Masato Sadahiro,Marcus Triplett,Amol Pasarkar,Hillel Adesnik,Liam Paninski

COSYNE 2022

ePosterNeuroscience

Real-time neural network denoising of 3D optogenetic connectivity maps

Benjamin Antin,Marta Gajowa,Masato Sadahiro,Marcus Triplett,Amol Pasarkar,Hillel Adesnik,Liam Paninski

COSYNE 2022

ePosterNeuroscience

Learning a divisive normalization model with a denoising objective

Xinyuan Zhao & Eero Simoncelli

COSYNE 2023

denoising coverage

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