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SeminarNeuroscience

Neuronal population interactions between brain areas

Byron Yu
Carnegie Mellon University
Dec 8, 2023

Most brain functions involve interactions among multiple, distinct areas or nuclei. Yet our understanding of how populations of neurons in interconnected brain areas communicate is in its infancy. Using a population approach, we found that interactions between early visual cortical areas (V1 and V2) occur through a low-dimensional bottleneck, termed a communication subspace. In this talk, I will focus on the statistical methods we have developed for studying interactions between brain areas. First, I will describe Delayed Latents Across Groups (DLAG), designed to disentangle concurrent, bi-directional (i.e., feedforward and feedback) interactions between areas. Second, I will describe an extension of DLAG applicable to three or more areas, and demonstrate its utility for studying simultaneous Neuropixels recordings in areas V1, V2, and V3. Our results provide a framework for understanding how neuronal population activity is gated and selectively routed across brain areas.

SeminarNeuroscience

Trends in NeuroAI - Meta's MEG-to-image reconstruction

Paul Scotti
Dec 7, 2023

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). This will be an informal journal club presentation, we do not have an author of the paper joining us. Title: Brain decoding: toward real-time reconstruction of visual perception Abstract: In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with remarkable fidelity. This neuroimaging technique, however, suffers from a limited temporal resolution (≈0.5 Hz) and thus fundamentally constrains its real-time usage. Here, we propose an alternative approach based on magnetoencephalography (MEG), a neuroimaging device capable of measuring brain activity with high temporal resolution (≈5,000 Hz). For this, we develop an MEG decoding model trained with both contrastive and regression objectives and consisting of three modules: i) pretrained embeddings obtained from the image, ii) an MEG module trained end-to-end and iii) a pretrained image generator. Our results are threefold: Firstly, our MEG decoder shows a 7X improvement of image-retrieval over classic linear decoders. Second, late brain responses to images are best decoded with DINOv2, a recent foundational image model. Third, image retrievals and generations both suggest that MEG signals primarily contain high-level visual features, whereas the same approach applied to 7T fMRI also recovers low-level features. Overall, these results provide an important step towards the decoding - in real time - of the visual processes continuously unfolding within the human brain. Speaker: Dr. Paul Scotti (Stability AI, MedARC) Paper link: https://arxiv.org/abs/2310.19812

SeminarNeuroscience

1.8 billion regressions to predict fMRI (journal club)

Mihir Tripathy
Jul 28, 2023

Public journal club where this week Mihir will present on the 1.8 billion regressions paper (https://www.biorxiv.org/content/10.1101/2022.03.28.485868v2), where the authors use hundreds of pretrained model embeddings to best predict fMRI activity.

SeminarNeuroscience

A novel form of retinotopy in area V2 highlights location-dependent feature selectivity in the visual system

Madineh Sedigh-Sarvestani
Max Planck Florida Institute for Neuroscience
Jan 19, 2022

Topographic maps are a prominent feature of brain organization, reflecting local and large-scale representation of the sensory surface. ​​Traditionally, such representations in early visual areas are conceived as retinotopic maps preserving ego-centric retinal spatial location while ensuring that other features of visual input are uniformly represented for every location in space. I will discuss our recent findings of a striking departure from this simple mapping in the secondary visual area (V2) of the tree shrew that is best described as a sinusoidal transformation of the visual field. This sinusoidal topography is ideal for achieving uniform coverage in an elongated area like V2 as predicted by mathematical models designed for wiring minimization, and provides a novel explanation for stripe-like patterns of intra-cortical connections and functional response properties in V2. Our findings suggest that cortical circuits flexibly implement solutions to sensory surface representation, with dramatic consequences for large-scale cortical organization. Furthermore our work challenges the framework of relatively independent encoding of location and features in the visual system, showing instead location-dependent feature sensitivity produced by specialized processing of different features in different spatial locations. In the second part of the talk, I will propose that location-dependent feature sensitivity is a fundamental organizing principle of the visual system that achieves efficient representation of positional regularities in visual input, and reflects the evolutionary selection of sensory and motor circuits to optimally represent behaviorally relevant information. The relevant papers can be found here: V2 retinotopy (Sedigh-Sarvestani et al. Neuron, 2021) Location-dependent feature sensitivity (Sedigh-Sarvestani et al. Under Review, 2022)

SeminarNeuroscience

Dysfunctional synaptic vesicle recycling – links to epilepsy

Mike Cousin
University of Edinburgh
Dec 1, 2021

Accurate and synchronous neurotransmitter release is essential for brain communication and occurs when neurotransmitter-containing synaptic vesicles (SVs) fuse to release their content in response to neuronal activity. Neurotransmission is sustained by the process of SV recycling, which generates SVs locally at the presynapse. Until relatively recently it was believed that most mutations in genes that were essential for SV recycling would be incompatible with life, due to this fundamental role. However, this is not the case, with mutations in essential genes for SV fusion, retrieval and recycling identified in individuals with epilepsy. This seminar will cover our laboratory’s progress in determining how genetic mutations in people with epilepsy translate into presynaptic dysfunction and ultimately into seizure activity. The principal focus of these studies will be in vitro investigations of, 1) the biological role of these gene products and 2) how their dysfunction impacts SV recycling, using live fluorescence imaging of genetically-encoded reporters. The gene products to be discussed in more detail will be the SV protein SV2A, the protein kinase CDKL5 and the translation repressor FMRP.

SeminarNeuroscienceRecording

Mechanisms of CACNA1A-associated developmental epileptic encephalopathies

Elsa Rossignol
University of Montreal
Nov 3, 2021

Developmental epileptic encephalopathies are early-onset epilepsies, often refractory to therapy, with developmental delay or regression. These disorders carry poor neurodevelopmental prognosis, with long-term refractory epilepsy and persistent cognitive, behavioral and motor deficits. Mutations in the CACNA1A gene, encoding the pore-forming α1 subunit of CaV2.1 voltage-gated calcium channels, result in a spectrum of neurological disorders, including severe, early-onset epileptic encephalopathies. Recent work from the Rossignol lab helped characterize the phenotypic spectrum of CACNA1A-related epilepsies in humans. Using conditional genetics and novel animal models, the Rossignol lab unveiled some of the underlying pathophysiological mechanisms, including critical deficits in cortical inhibition, resulting in seizures and a range of cognitive-behavioral deficits. Importantly, Dr. Rossignol’s team demonstrated that the targeted activation of specific GABAergic interneuron populations in selected cortical regions prevents motor seizures and reverts attention deficits and cognitive rigidity in mouse models of the disorder. These recent findings open novel avenues for the treatment of these severe CACNA1A-associated neurodevelopmental disorders.

SeminarNeuroscienceRecording

Generation Covid-19: Should the fetus be worried?

Topun Austin
Cambridge University Hospitals NHS Foundation Trust
Dec 1, 2020

Historically pregnant women and their unborn baby have been amongst those with the poorest outcomes in previous epidemics, most notably the Zika virus. For much of 2020, with the emergence of the novel coronavirus, the effect on the fetus remains unclear. While initial reports suggest that vertical transmission with SARS-CoV2 is reassuringly rare, the complex socioeconomic, domestic and broader maternal lifestyle factors which can influence a child’s lifelong well-being have been modulated during the experience of this pandemic. The developing brain is particularly susceptible to maternal stress, resulting in permanent structural changes and increased incidence of behavioural and mental health illness later in childhood. A large international longitudinal survey is being undertaken by the Department of Psychology to better understand the impact of the pandemic on those yet to be born.

ePosterNeuroscience

Affine models explain tuning-dependent correlated variability within and between V1 and V2

Ji Xia,Ken Miller

COSYNE 2022

ePosterNeuroscience

Feedforward and feedback computations in V1 and V2 in a hierarchical Variational Autoencoder

Ferenc Csikor,Balázs Meszéna,Gergő Orbán

COSYNE 2022

ePosterNeuroscience

Feedforward and feedback computations in V1 and V2 in a hierarchical Variational Autoencoder

Ferenc Csikor,Balázs Meszéna,Gergő Orbán

COSYNE 2022

ePosterNeuroscience

V2 builds a generalizable texture representation

Abhimanyu Pavuluri & Adam Kohn

COSYNE 2023

ePosterNeuroscience

Cue-invariant geometric structure of the population codes in macaque V1 and V2

Zitong Wang, Xiaoqi Zhang, Corentin Massot, Harold Rockwell, George Papandreou, Alan Yuille, Tai-Sing Lee

COSYNE 2025

ePosterNeuroscience

Flexibility of signaling across and within visual cortical areas V1 and V2

Aravind Krishna, Evren Gokcen, Anna Jasper, Byron Yu, Christian Machens, Adam Kohn

COSYNE 2025

ePosterNeuroscience

Alternative splicing of Cav2.1 EF-hand contributes to the tightness of calcium influx-neurotransmitter release coupling at mouse cerebellar synapses

Kohgaku Eguchi, Le Monnier Elodie, Ryuichi Shigemoto

FENS Forum 2024

ePosterNeuroscience

Anatomo-functional diversity of medullary V2a neurons for limb and cranial nerve-mediated movements

Alexis d'Humières, Mathilde Gonin, Guillaume Le Goc, Giovanni Usseglio, Edwin Gatier, Julien Bouvier

FENS Forum 2024

ePosterNeuroscience

Cav2.1 splice variants organize in nanodomains at presynaptic boutons where they differentially regulate synaptic vesicle release and synaptic facilitation

Asja Ragnini, Agnes Thalhammer, Fanny Jaudon, Jessica Muià, Lorenzo A. Cingolani, Gabriele Baj

FENS Forum 2024

ePosterNeuroscience

Disrupted nanoscale organization of GABAB receptors and CaV2.1 channels in the hippocampus of APP/PS1 mice

Carolina Aguado, Alejandro Martín-Belmonte, Rocío Alfaro-Ruiz, Ana Esther Moreno-Martínez, Miriam Fernández, María Llanos Martínez-Poyato, Ricardo Alfonso Puertas-Avendaño, Yugo Fukazawa, Rafael Luján

FENS Forum 2024

ePosterNeuroscience

Dynamic TRPV2 localization by focal mechanical stimulation enhances growth cone motility

Koji Shibasaki, Shouta Sugio

FENS Forum 2024

ePosterNeuroscience

From anatomy to functions in locomotion: An optogenetic investigation on the organisation of V2a-derived reticulospinal neurons

Xinyu Jia, Martin Carbo-Tano, Mathilde Lapoix, Claire Wyart

FENS Forum 2024

ePosterNeuroscience

Glycosylation of synaptic vesicle glycoprotein 2C (SV2C) in cellular trafficking: Impact on Parkinson's disease

Png Wen Yang, Cao Mian

FENS Forum 2024

ePosterNeuroscience

Lhx4 surpasses Lhx3 to promote the differentiation of spinal V2a interneurons

Estelle Renaux, Charlotte Baudouin, Damien Marchese, Yoanne Clovis, Younès Achouri, Lin Gan, Soo-Kyung Lee, René Rezsohazy, Frédéric Clotman

FENS Forum 2024

ePosterNeuroscience

Mechanisms of facilitation of cortical spreading depression in a genetic mouse model of migraine with a gain-of-function mutation in CaV2.1 channels

Marina Vitale, Angelita Tottene, Maral Zarin Zadeh, Daniela Pietrobon

FENS Forum 2024

ePosterNeuroscience

PPIase contributes to EA2-associated defective protein homeostasis of human CaV2.1 channel

Ssu-Ju Fu, Cheng-Tsung Hsiao, Chung-Jiuan Jeng, Chih-Yung Tang

FENS Forum 2024

ePosterNeuroscience

Rostro-caudal control of locomotor steering strategies by V2a reticulospinal modules

Andrea Giorgi, Edwin Gatier, Julien Bouvier

FENS Forum 2024

ePosterNeuroscience

Subcellular localization of the calcium channel Cav2.3 in cultured hippocampal neurons

Stephan-Matthias Schulreich, Ruslan Stanika, Sabrin Haddad, Cornelia Ablinger, Gerald J. Obermair

FENS Forum 2024

ePosterNeuroscience

Understanding CaV2.1 dysfunction in neurological disorders: Insights from novel CRISPR/Cas9 mouse model and iPSC-derived neurons

Fanny Jaudon, Riccardo Ruggeri, Ilaria Musante, Sara Riccardi, Paolo Scudieri, Lorenzo Muzzi, Floriana Guida, Federico Zara, Lorenzo A. Cingolani

FENS Forum 2024

ePosterNeuroscience

VSX1 expression in V2 precursor cells at embryological stages could be used to follow spared V2 interneurons after a traumatic injury in adulthood

Ana Dominguez Bajo, Andrea Angla, Guillaume Van Lint, Benoît Derneden, Stéphanie Debrulle, Frédéric Clotman

FENS Forum 2024

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