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SeminarPhysics of LifeRecording

Crystallinity characterization of white matter in the human brain

Erin Teich
University of Pennsylvania
May 9, 2022

White matter microstructure underpins cognition and function in the human brain through the facilitation of neuronal communication, and the non-invasive characterization of this structure remains an elusive goal in the neuroscience community. Efforts to assess white matter microstructure are hampered by the sheer amount of information needed for characterization. Current techniques address this problem by representing white matter features with single scalars that are often not easy to interpret. Here, we address these issues by introducing tools from soft matter for the characterization of white matter microstructure. We investigate structure on a mesoscopic scale by analyzing its homogeneity and determining which regions of the brain are structurally homogeneous, or ``crystalline" in the context of materials science. We find that crystallinity is a reliable metric that varies across the brain along interpretable lines of anatomical difference. We also parcellate white matter into ``crystal grains," or contiguous sets of voxels of high structural similarity, and find overlap with other white matter parcellations. Our results provide new means of assessing white matter microstructure on multiple length scales, and open new avenues of future inquiry.

SeminarPhysics of Life

Motor guidance by long range communication through the microtubule highway

Sithare Wijeratne
Apr 30, 2021
SeminarPhysics of LifeRecording

Inertial active soft matter

Hartmut Löwen
universität düsseldorf
Mar 24, 2021

Active particles which are self-propelled by converting energy into mechanical motion represent an expanding research realm in physics and chemistry. For micron-sized particles moving in a liquid (``microswimmers''), most of the basic features have been described by using the model of overdamped active Brownian motion [1]. However, for macroscopic particles or microparticles moving in a gas, inertial effects become relevant such that the dynamics is underdamped. Therefore, recently, active particles with inertia have been described by extending the active Brownian motion model to active Langevin dynamics which include inertia [2]. In this talk, recent developments of active particles with inertia (``microflyers'', ``hoppers'' or ``runners'') are summarized including: inertial delay effects between particle velocity and self-propulsion direction [3], tuning of the long-time self-diffusion by the moment of inertia [3], the influence of inertia on motility-induced phase separation and the cluster growth exponent [4], and the formation of active micelles (“rotelles”) by using inertial active surfactants. References [1] C. Bechinger, R. di Leonardo, H. Löwen, C. Reichhardt, G. Volpe, G. Volpe, Reviews of Modern Physics 88, 045006 (2016). [2] H. Löwen, Journal of Chemical Physics 152, 040901 (2020). [3] C. Scholz, S. Jahanshahi, A. Ldov, H. Löwen, Nature Communications 9, 5156 (2018). [4] S. Mandal, B. Liebchen, H. Löwen, Physical Review Letters 123, 228001 (2019). [5] C. Scholz, A. Ldov, T. Pöschel, M. Engel, H. Löwen, Surfactants and rotelles in active chiral fluids, will be published

SeminarPhysics of Life

Sustainability in Space and on Earth: Research Initiatives of the Space Enabled Research Group

Dr. Danielle Wood
MIT Media Lab
Nov 20, 2020

The presentation will present the work of the Space Enabled Research Group at the MIT Media Lab. The mission of the Space Enabled Research Group is to advance justice in Earth’s complex systems using designs enabled by space. Our message is that six types of space technology are supporting societal needs, as defined by the United Nations Sustainable Development Goals. These six technologies include satellite earth observation, satellite communication, satellite positioning, microgravity research, technology transfer, and the infrastructure related to space research and education. While much good work has been done, barriers remain that limit the application of space technology as a tool for sustainable development. The Space Enabled Research Group works to increase the opportunities to apply space technology in support of the Sustainable Development Goals and to support space sustainability. Our research applies six methods, including design thinking, art, social science, complex systems, satellite engineering and data science. We pursue our work by collaborating with development leaders who represent multilateral organizations, national and local governments, non-profits and entrepreneurial firms to identify opportunities to apply space technology in their work. We strive to enable a more just future in which every community can easily and affordably apply space technology. The work toward our mission covers three themes: 1) Research to apply existing space technology to support the United Nations Sustainable Development Goals; 2) Research to design space systems that are accessible and sustainable; and 3) Research to study the relationship between technology design and justice. The presentation will give examples of research projects within each of these themes.

SeminarPhysics of Life

Finding Needles in Genomic Haystacks

Robert Phillips
California Institute of Technology
Sep 1, 2020

The ability to read the DNA sequences of different organisms has transformed biology in much the same way that the telescope transformed astronomy. And yet, much of the sequence found in these genomes is as enigmatic as the Rosetta Stone was to early Egyptologists. With the aim of making steps to crack the genomic Rosetta Stone, I will describe unexpected ways of using the physics of information transfer first developed at Bell Labs for thinking about telephone communications to try to decipher the meaning of the regulatory features of genomes. Specifically, I will show how we have been able to explore genes for which we know nothing about how they are regulated by using a combination of mutagenesis, deep sequencing and the physics of information, with the result that we now have falsifiable hypotheses about how those genes work. With those results in hand, I will show how simple tools from statistical physics can be used to predict the level of expression of different genes, followed by a description of precision measurements used to test those predictions. Bringing the two threads of the talk together, I will think about next steps in reading and writing genomes at will.

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