PhDApplications Closed

Dr Panayiota Poirazi

Crete, Greece
Apply by Feb 28, 2021

Application deadline

Feb 28, 2021

Job

Job location

Dr Panayiota Poirazi

Geocoding

Crete, Greece

Geocoding in progress.

Source: legacy

Quick Information

Application Deadline

Feb 28, 2021

Start Date

Flexible

Education Required

See description

Experience Level

Not specified

Job

Job location

Dr Panayiota Poirazi

Geocoding

Crete, Greece

Geocoding in progress.

Source: legacy

Map

Job Description

The successful applicant will build a simulation model of the DG-CA3-CA1 hippocampal network and use it to assess the role of dendritic nonlinearities on both the memory capacity and the structure of the resulting networks, following contextual and spatial learning. Specifically, the successful applicant will build simplified integrate-and-fire circuits of the DG, CA3 and CA1 hippocampal sub-regions, interconnected in one network and equipped with known plasticity rules such as LTP/LTD, homeostatic plasticity and plasticity of neuronal excitability. The basic biophysical properties of all models will be validated against existing experimental data provided by the literature, ongoing collaborations (e.g. Attila Losonczy, Columbia University) and partners of this ETN (secondment Fleur Zeldenrust and Tansu Celikel). The hippocampal circuit model will be trained with two integrative tasks: contextual learning and spatial learning. The properties of the resulting engram (e.g. neuronal population size during recall, somatic and dendritic excitability, dendritic spiking probability, synaptic weight changes, spatial distribution of modified synapses, sparsity, place cell number, stability, sensitivity etc) will be assessed. By systematically manipulating dendritic biophysics (i.e. ionic and synaptic conductances) so as to generate linear, sublinear and supralinear dendrites, as well as the various synaptic/intrinsic plasticity rules, we will assess the effect of these manipulations on a) learning capacity, b) the emergent connectivity of the network post-learning, c) engram size/connectivity/recall stability etc.

For more information see: https://www.smartnets-etn.eu/role-of-dendritic-nonlinearities-in-hippocampal-network-properties-after-contextual-and-spatial-learning/

Requirements

  • We seek candidates interested in pursuing a PhD in computational neuroscience
  • with the possibility of also performing some in vivo experiments in behaving mice. They must be highly motivated and creative individuals who want to work in a dynamic
  • multi-disciplinary research environment and be willing to interact with both experimental and theoretical neuroscientists. Previous experience should include solid programming skills
  • ideally including computational simulations of neurons. Experience or familiarity with related experimental procedures/data collection and analysis is desirable.
  • Characteristics of the ideal candidate:
  • BSc in Biology
  • Neuroscience
  • Computer Science or Physics
  • MSc in Computational Neuroscience
  • Neuroscience
  • Biology or a related subject.
  • Solid programming skills using LINUX (python
  • NEURON
  • Matlab
  • BRIAN)
  • Experience in computational modeling of neurons
  • Experience with processing and analysis of neuronal data.
  • Fluency in spoken and written English.
  • Strong communication and interpersonal skills
  • being able to work comfortably both in a team and somewhat independently.
  • Demonstrated ability to perform research (eg. publications
  • conference presentations)