PhDApplications Closed
Prof Georges Debrégeas
Paris, France
Apply by Dec 31, 2020
Application deadline
Dec 31, 2020
Job
Job location
Prof Georges Debrégeas
Paris, France
Geocoding in progress.
Source: legacy
Quick Information
Application Deadline
Dec 31, 2020
Start Date
Flexible
Education Required
See description
Experience Level
Not specified
Job
Job location
Prof Georges Debrégeas
Job Description
Motile animals use sensory cues to navigate towards environments where there are more likely to obtain food, find mates or to avoid predators. Sensory-driven navigation relies on a closed-loop mechanism between motor action and motor-induced sensory inputs. At each instant, multiple sensory cues have to be integrated to bias the forthcoming motor command. The student will thoroughly and quantitatively characterize the behavioral algorithm underlying sensory-driven navigation in zebrafish larvae. The animals will be 5-10 days old, as this age is amenable to whole-brain functional imaging. The project will focus on both phototaxis (navigation towards a light source) and thermotaxis (navigation relative to a thermal gradient). Two experimental platforms will be set up.
1. Freely swimming larvae will be video-monitored and submitted to whole-field visual stimuli. The visual stimulation will be locked in real-time on the animal’s orientation and/or position in space. This will allow in particular to separately probe the effect of stereo (difference in illumination between both eyes) and uniform (total illumination on both eyes) visual cues. For thermally-driven navigation, the animal will be allowed to freely explore a large environment in which a constant thermal gradient is imposed.e
2. Experiments will be reproduced in a virtual-reality setting. In this case, the animal is partially restrained in agarose with its tail free. Monitoring the tail movement will provide access to its virtual displacement, on which the visual and/or thermal stimuli will be locked.
These behavioral experiments will be analysed in order to describe the animal’s navigation as a sensory-biased random walk.
For more information see: https://www.smartnets-etn.eu/behavioral-characterization-of-sensory-driven-nagivation-in-zebrafish-larvae/
1. Freely swimming larvae will be video-monitored and submitted to whole-field visual stimuli. The visual stimulation will be locked in real-time on the animal’s orientation and/or position in space. This will allow in particular to separately probe the effect of stereo (difference in illumination between both eyes) and uniform (total illumination on both eyes) visual cues. For thermally-driven navigation, the animal will be allowed to freely explore a large environment in which a constant thermal gradient is imposed.e
2. Experiments will be reproduced in a virtual-reality setting. In this case, the animal is partially restrained in agarose with its tail free. Monitoring the tail movement will provide access to its virtual displacement, on which the visual and/or thermal stimuli will be locked.
These behavioral experiments will be analysed in order to describe the animal’s navigation as a sensory-biased random walk.
For more information see: https://www.smartnets-etn.eu/behavioral-characterization-of-sensory-driven-nagivation-in-zebrafish-larvae/
Requirements
- A (research) MSc degree in a quantitative field (computer science
- engineering
- physics
- mathematics
- etc.).
- Experience with scientific programming or an interest in learning it (Python
- Matlab or other).
- Enthusiasm and the ability to work in a multidisciplinary environment.
- Excellent communication skills in spoken and written English.
- Expertise in Computational Neuroscience or an interest in acquiring it.
Job
Job location
Prof Georges Debrégeas
Coordinates pending.