Marine Ecology seminars

Ocean-wide movement and mixing between tuna stocks make population monitoring difficult and increase uncertainty in sustainable-harvest estimates. Matthew Lauretta presents genetic close-kin mark-recapture methods evaluated using western Atlantic bluefin tuna collected during fisheries monitoring and research surveys. Larvae sampled on western spawning grounds provide genetic links to mature fish at spawning time. Adults later migrate to Northwest Atlantic feeding grounds, where they mix with other stocks. Comparing larval genotypes with adults caught by fisheries identifies parent–offspring relationships, allowing estimation of capture probabilities and the total abundance and biomass of the spawning population with relatively high precision. Online via Vimeo with advance attendee registration, including an option for attendees outside NOAA. Live captions are available and a recording is planned.

Distinguishing diatom and dinoflagellate blooms in Chesapeake Bay is difficult because its waters are optically complex and field observations rarely coincide with satellite measurements. This project combines historical phytoplankton observations, NOAA satellite bloom products, geospatial processing and ecological information in a reproducible workflow. Quality control addresses mixed pixels, land contamination, cloud, missing observations, saturation and inconsistent coordinates. Of 31,531 field-to-satellite records, 860 initially pass validation; neighbouring pixels offer further recoverable data. A preliminary Mini U-Net illustrates segmentation feasibility but exposes weak automatic labels, motivating interactive expert validation and masking. Seasonal phenology and environmental variables are evaluated as features for future multimodal models. The NOAA NERTO project was mentored by Michelle Tomlinson and Sachidananda Mishra at NCCOS.

NOAA's Mussel Watch records are examined as a unified framework for coastal contamination. The study combines sediment chemistry, toxicity, benthic condition and tissue measurements, using AMBI and M-AMBI scores at 732 national assessment sites and 33 Hudson–Raritan stations. Random-forest and Bayesian models associate urbanization with benthic condition in the New York region (ρ=0.62), but not nationally (ρ=0.05). A Delft3D estuary model reproduces observed tides and predicts increased deep-channel bed shear under sea-level rise. The work asks whether sediment contaminants mediate urbanization impacts and whether legacy cleanup remains effective as sea level changes. It was conducted through a NOAA NERTO graduate internship with Kimani Kimbrough and Erik Davenport at NCCOS.

This webinar examines reconstruction and use of marine metagenome-assembled genomes. The first part introduces the Ocean Microbiomics Database as a standardized resource for prokaryotic genome-resolved analysis, including co-abundance-based reconstruction, contextual metadata, and relationships between ecological patterns and microbial genomes. The second part considers why eukaryotic genomes are harder to recover: their complexity, low abundance, and limited markers and reference sequences complicate assembly and classification. Participants will compare reconstruction approaches, explore the database, and consider tools and steps for recovering eukaryotic genomes. The session serves academic and industrial researchers developing marine-microbiome applications and infrastructure teams managing samples, data, and discovery resources.

Hans Slabbekoorn examines animal acoustic communication, from birdsong to low-frequency whale calls. Songs and other signals support courtship and conflict, while the acoustic properties of habitats shape their evolution. Expanding human noise in terrestrial and aquatic environments is changing the conditions under which these signals function. The lecture considers this acoustic environmental change and the attention needed to preserve animal communication, alongside implications for human physical and mental health.

Ports provide natural experiments in evolution because repeated introductions bring together organisms with different histories. This seminar examines how shipping and coastal urbanization generate mixed populations, dispersal mosaics and hybrid ecotypes. It explains how these processes help introduced marine species establish and can create ecological relationships and evolutionary lineages unlikely to arise without human transport.

It has long been appreciated (and celebrated) that certain species have sensory capabilities that humans do not share, for example polarization, ultraviolet, and infrared vision. What is less appreciated however, is that our position as terrestrial human scientists can significantly affect our study of animal senses and signals, even within modalities that we do share. For example, our acute vision can lead us to over-interpret the relevance of fine patterns in animals with coarser vision, and our Cartesian heritage as scientists can lead us to divide sensory modalities into orthogonal parameters (e.g. hue and brightness for color vision), even though this division may not exist within the animal itself. This talk examines two cases from marine visual ecology where a reconsideration of our biases as sharp-eyed Cartesian land mammals can help address questions in visual ecology. The first case examines the enormous variation in visual acuity among animals with image-forming eyes, and focuses on how acknowledging the typically poorer resolving power of animals can help us interpret the function of color patterns in cleaner shrimp and their client fish. The second case examines the how the typical human division of polarized light stimuli into angle and degree of polarization is problematic, and how a physiologically relevant interpretation is both closer to the truth and resolves a number of issues, particularly when considering the propagation of polarized light