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Spatial Single Cell Genomics

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SeminarPast EventNeuroscience

Spatial and Single Cell Genomics for Next Generation Neuroscience

Evan Macosko

Broad Institute, Cambridge, USA

Schedule
Thursday, October 12, 2023

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Schedule

Thursday, October 12, 2023

4:00 PM Europe/Zurich

Host: NeuroLeman Network

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Format

Past Seminar

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Host

NeuroLeman Network

Duration

70.00 minutes

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Abstract

The advent of next generation sequencing ushered in a ten-year period of exuberant technology development, enabling the quantification of gene expression and epigenetic features within individual cells, and within intact tissue sections.  In this seminar, I will outline our technological contributions, beginning with the development of Drop-seq, a method for high-throughput single cell analysis, followed by the development of Slide-seq, a technique for measuring genome-wide expression at 10 micron spatial resolution.  Using a combination of these techniques, we recently constructed a comprehensive cell type atlas of the adult mouse brain, positioning cell types within individual brain structures.  I will discuss the major findings from this dataset, including emerging principles of neurotransmission, and the localization of disease gene signatures to specific cell types.  Finally, I will introduce a new spatial technology, Slide-tags, that unifies single cell and spatial genomics into a single, highly scalable assay.

Topics

BMI Seminarcell type atlasdisease gene signaturesdrop-seqgene expressionneurotransmissionnext generation sequencingsingle cell analysisslide-seqspatial genomics

About the Speaker

Evan Macosko

Broad Institute, Cambridge, USA

Contact & Resources

@NeuroLeman

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twitter.com/NeuroLeman

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