Neuroscience seminars

Case-control comparisons are a gold standard method for diagnosing and researching neuropsychological deficits and dissociations at the single-case level. These statistical tests, developed by John Crawford and collaborators, provide quantitative criteria for the classical concepts of deficit, dissociation and double-dissociation. Much attention has been given to the control of Type I (false positive) errors for these tests, but far less to the avoidance of Type II (false negative) errors; that is, to statistical power. I will describe the origins and limits of statistical power for case-control comparisons, showing that there are hard upper limits on power, which have important implications for the design and interpretation of single-case studies. My aim is to stimulate discussion of the inferential status of single-case neuropsychological evidence, particularly with respect to contemporary ideals of open science and study preregistration.

Scientists work in laboratories; comfortable spaces which we equip and configure to be ideal for our needs. The scientific paradigm has been adopted by clinicians, who run diagnostic tests and treatments in fully equipped hospital facilities. Yet advances in technology mean that that increasingly many functions of a laboratory can be compressed into miniature devices, or even into a smartphone app. This has the potential to be transformative for healthcare in developing nations, allowing complex tests and interventions to be made available in every village. In this talk, I will give two examples of this approach from my recent work. In the field of stroke rehabilitation, I will present basic research which we have conducted in animals over the last decade. This reveals new ways to intervene and strengthen surviving pathways, which can be deployed in cheap electronic devices to enhance functional recovery. In degenerative disease, we have used Bayesian statistical methods to improve an algorithm to measure how rapidly a subject can stop an action. We then implemented this on a portable device and on a smartphone app. The measurement obtained can act as a useful screen for Parkinson’s Disease. I conclude with an outlook for the future of this approach, and an invitation to those who would be interesting in collaborating in rolling it out to in African settings.

Sensory experience and perceptual learning changes receptive field properties of cortical pyramidal neurons possibly mediated by long-term potentiation (LTP) of synapses. We have previously shown in the mouse somatosensory cortex (S1) that sensory-driven LTP in layer (L) 2/3 pyramidal neurons is dependent on higher order thalamic feedback from the posteromedial nucleus (POm), which is thought to convey contextual information from various cortical regions integrated with sensory input. We have followed up on this work by dissecting the cortical microcircuitry that underlies this form of LTP. We found that repeated pairing of Pom thalamocortical and intracortical pathway activity in brain slices induces NMDAr-dependent LTP of the L2/3 synapses that are driven by the intracortical pathway. Repeated pairing also recruits activity of vasoactive intestinal peptide (VIP) interneurons, whereas it reduces the activity of somatostatin (SST) interneurons. VIP interneuron-mediated inhibition of SST interneurons has been established as a motif for the disinhibition of pyramidal neurons. By chemogenetic interrogation we found that activation of this disinhibitory microcircuit motif by higher-order thalamic feedback is indispensable for eliciting LTP. Preliminary results in vivo suggest that VIP neuron activity also increases during sensory-evoked LTP. Together, this suggests that the higherorder thalamocortical feedback may help modifying the strength of synaptic circuits that process first-order sensory information in S1. To start characterizing the relationship between higher-order feedback and cortical plasticity during learning in vivo, we adapted a perceptual learning paradigm in which head-fixed mice have to discriminate two types of textures in order to obtain a reward. POm axons or L2/3 pyramidal neurons labeled with the genetically encoded calcium indicator GCaMP6s were imaged during the acquisition of this task as well as the subsequent learning of a new discrimination rule. We found that a subpopulation of the POm axons and L2/3 neurons dynamically represent textures. Moreover, upon a change in reward contingencies, a fraction of the L2/3 neurons re-tune their selectivity to the texture that is newly associated with the reward. Altogether, our data indicates that higher-order thalamic feedback can facilitate synaptic plasticity and may be implicated in dynamic sensory stimulus representations in S1, which depends on higher-order features that are associated with the stimuli.

The ALBA Network and Black in Neuro are partnering to bring the Black neuroscientific community in Europe together. Are you a Black neuroscientist based in Europe? If so, join us for this casual online networking event. We will share our experience, stories and knowledge about what it is to be black in Europe while working in brain research. We will also discuss potential actions ALBA and BiN could take to provide better visibility to the community. This is a time to get to know each other, share, network and relate. Please register to receive the link to the zoom meeting.

For spatial orientation, heading information can be processed in two different frames of reference, a self-centered egocentric or a viewpoint allocentric frame of reference. Using the most efficient frame of reference is in particular important if an animal migrates over large distances, as it the case for the monarch butterfly (Danaus plexippus). These butterflies employ a sun compass to travel over more than 4,000 kilometers to their destination in central Mexico. We developed tetrode recordings from the heading-direction network of tethered flying monarch butterflies that were allowed to orient with respect to a sun stimulus. We show that the neurons switch their frame of reference depending on the animal’s locomotion state. In quiescence, the heading-direction cells encode a sun bearing in an egocentric reference frame, while during active flight, the heading-direction is encoded within an allocentric reference frame. By switching to an allocentric frame of reference during flight, monarch butterflies convert the sun to a global compass cue for long-distance navigation, an ideal strategy for maintaining a migratory heading.

The songbird zebra finch is an exemplary model system in which to study trial-and-error learning, as the bird learns its single song gradually through the production of many noisy renditions. It is also a good system in which to study the maintenance of motor skills, as the adult bird actively maintains its song and retains some residual plasticity. Motor learning occurs through the association of timing within the song, represented by sparse firing in nucleus HVC, with motor output, driven by nucleus RA. Here we show through modeling that the small level of observed variability in HVC can result in a network which is more easily able to adapt to change, and is most robust to cell damage or death, than an unperturbed network. In collaboration with Carlos Lois’ lab, we also consider the effect of directly perturbing HVC through viral injection of toxins that affect the firing of projection neurons. Following these perturbations, the song is profoundly affected but is able to almost perfectly recover. We characterize the changes in song acoustics and syntax, and propose models for HVC architecture and plasticity that can account for some of the observed effects. Finally, we suggest a potential role for inputs from nucleus Uva in helping to control timing precision in HVC.

The Group Iterative Multiple Model Estimation (GIMME) framework has emerged as a promising method for characterizing connections between brain regions in functional neuroimaging data. Two of the most appealing features of this framework are its ability to estimate the directionality of connections between network nodes and its ability to determine whether those connections apply to everyone in a sample (group-level) or just to one person (individual-level). However, there are outstanding questions about the validity and stability of these estimates, including: 1) how recovery of connection directionality is affected by features of data sets such as scan length and autoregressive effects, which may be strong in some imaging modalities (resting state fMRI, fNIRS) but weaker in others (task fMRI); and 2) whether inferences about directionality at the group and individual levels are stable across time. This talk will provide an overview of the GIMME framework and describe relevant results from a large-scale simulation study that assesses directionality recovery under various conditions and a separate project that investigates the temporal stability of GIMME’s inferences in the Human Connectome Project data set. Analyses from these projects demonstrate that estimates of directionality are most precise when autoregressive and cross-lagged relations in the data are relatively strong, and that inferences about the directionality of group-level connections, specifically, appear to be stable across time. Implications of these findings for the interpretation of directional connectivity estimates in different types of neuroimaging data will be discussed.

The nervous system and the immune system share the common ability to exert gatekeeper roles at the interfaces between internal and external environment. Although interaction between these two evolutionarily highly conserved systems is long recognized, the pathophysiological mechanisms regulating their reciprocal crosstalk in cardiovascular diseases became object of investigation only more recently. In the last years, our group elucidated how the autonomic nervous system controls the splenic immunity recruited by hypertensive challenges. In my talk, I will focus on the molecular mechanisms that regulate the neuro-immune crosstalk in hypertension. I will elaborate on the mechanistic insights into this brain-spleen axis led us uncover a new molecular pathway mediating the neuroimmune interaction established by noradrenergic-mediated release in the spleen of placental growth factor (PlGF), an angiogenic growth factor potentially targetable with pharmacological approaches.

Research tools are paramount for scientific development, they enable researchers to observe and manipulate natural phenomena, learn their principles, make predictions and develop new technologies, treatments and improve living standards. Due to their costs and the geographical distribution of manufacturing companies access to them is not widely available, hindering the pace of research, the ability of many communities to contribute to science and education and reap its benefits. One possible solution for this issue is to create research tools under the open source ethos, where all documentation about them (including their designs, building and operating instructions) are made freely available. Dubbed Open Science Hardware (OSH), this production method follows the established and successful principles of open source software and brings many advantages over traditional creation methods such as: economic savings (see Pearce 2020 for potential economic savings in developing open source research tools), distributed manufacturing, repairability, and higher customizability. This development method has been greatly facilitated by recent technological developments in fast prototyping tools, Internet infrastructure, documentation platforms and lower costs of electronic off-the-shelf components. Taken together these benefits have the potential to make research more inclusive, equitable, distributed and most importantly, more reliable and reproducible, as - 1) researchers can know their tools inner workings in minute detail - 2) they can calibrate their tools before every experiment and having them running in optimal condition everytime - 3) given their lower price point, a)students can be trained/taught with hands on classes, b) several copies of the same instrument can be built leading to a parallelization of data collection and the creation of more robust datasets. - 4) Labs across the world can share the exact same type of instruments and create collaborative projects with standardized data collection and sharing.

Recent findings have revealed that mRNAs have a much more dynamic behaviour than initially described. This is particularly true in neurons, where mRNAs are transported to specific axonal and dendritic areas. The seminar will present our most recent findings unveiling complex mRNA processing dynamics driven by splicing proteins in developing axons.

What are the things that draw us to a particular field of science and what is it that keeps us there? For Dr. Bahia, there was a particular attraction to sensory nerves; the monitors of the worlds inside and outside of our bodies. In this talk, Dr. Bahia will outline her career path as a neuroscientist resulting in the title of Research Associate. She will also talk about the longest project she has participated in, 'exploring the role of ion channels in sensory nerves' (rupress.org/jgp/article/147/6/451/43495/The-exceptionally-high-reactivity-of-Cys-621-is)

The symposium will start with A/Prof Jenny Gunnersen who will present “New insights into mechanisms of excitatory synapse development”. Then, Dr Tommas Ellender will deal with the “Embryonic neural progenitor pools and the generation of fine-scale neural circuits” and Dr Thomas Marissal will talk about “Parvalbumin interneurons: the missing link between the micro and macroscopic alterations related to neurodevelopmental disorders?"”.