Seminars

This webinar features presentations from SueYeon Chung (New York University) and Srinivas Turaga (HHMI Janelia Research Campus) on theoretical and computational approaches to sensory cognition. Chung introduced a “neural manifold” framework to capture how high-dimensional neural activity is structured into meaningful manifolds reflecting object representations. She demonstrated that manifold geometry—shaped by radius, dimensionality, and correlations—directly governs a population’s capacity for classifying or separating stimuli under nuisance variations. Applying these ideas as a data analysis tool, she showed how measuring object-manifold geometry can explain transformations along the ventral visual stream and suggested that manifold principles also yield better self-supervised neural network models resembling mammalian visual cortex. Turaga described simulating the entire fruit fly visual pathway using its connectome, modeling 64 key cell types in the optic lobe. His team’s systematic approach—combining sparse connectivity from electron microscopy with simple dynamical parameters—recapitulated known motion-selective responses and produced novel testable predictions. Together, these studies underscore the power of combining connectomic detail, task objectives, and geometric theories to unravel neural computations bridging from stimuli to cognitive functions.

Perhaps the most impressive aspect of the way the brain enables us to act on the sensory world is its flexibility. We can make a general inference about many sensory features (rating the ripeness of mangoes or avocados) and map a single stimulus onto many choices (slicing or blending mangoes). These can be thought of as flexibly mapping many (features) to one (inference) and one (feature) to many (choices) sensory inputs to actions. Both theoretical and experimental investigations of this sort of flexible sensorimotor mapping tend to treat sensory areas as relatively static. Models typically instantiate flexibility through changing interactions (or weights) between units that encode sensory features and those that plan actions. Experimental investigations often focus on association areas involved in decision-making that show pronounced modulations by cognitive processes. I will present evidence that the flexible formatting of visual information in visual cortex can support both generalized inference and choice mapping. Our results suggest that visual cortex mediates many forms of cognitive flexibility that have traditionally been ascribed to other areas or mechanisms. Further, we find that a primary difference between visual and putative decision areas is not what information they encode, but how that information is formatted in the responses of neural populations, which is related to difference in the impact of causally manipulating different areas on behavior. This scenario allows for flexibility in the mapping between stimuli and behavior while maintaining stability in the information encoded in each area and in the mappings between groups of neurons.

Understanding Human ability to learn novel concepts from just a few sensory experiences is a fundamental problem in cognitive neuroscience. I will describe a recent work with Ben Sorcher and Surya Ganguli (PNAS, October 2022) in which we propose a simple, biologically plausible, and mathematically tractable neural mechanism for few-shot learning of naturalistic concepts. We posit that the concepts that can be learned from few examples are defined by tightly circumscribed manifolds in the neural firing-rate space of higher-order sensory areas. Discrimination between novel concepts is performed by downstream neurons implementing ‘prototype’ decision rule, in which a test example is classified according to the nearest prototype constructed from the few training examples. We show that prototype few-shot learning achieves high few-shot learning accuracy on natural visual concepts using both macaque inferotemporal cortex representations and deep neural network (DNN) models of these representations. We develop a mathematical theory that links few-shot learning to the geometric properties of the neural concept manifolds and demonstrate its agreement with our numerical simulations across different DNNs as well as different layers. Intriguingly, we observe striking mismatches between the geometry of manifolds in intermediate stages of the primate visual pathway and in trained DNNs. Finally, we show that linguistic descriptors of visual concepts can be used to discriminate images belonging to novel concepts, without any prior visual experience of these concepts (a task known as ‘zero-shot’ learning), indicated a remarkable alignment of manifold representations of concepts in visual and language modalities. I will discuss ongoing effort to extend this work to other high level cognitive tasks.

Behavioral studies have demonstrated that certain task features reliably enhance classification performance for challenging visual stimuli. These include extended image presentation time and the valid cueing of attention. Here, I will show how convolutional neural networks can be used as a model of the visual system that connects neural activity changes with such performance changes. Specifically, I will discuss how different anatomical forms of recurrence can account for better classification of noisy and degraded images with extended processing time. I will then show how experimentally-observed neural activity changes associated with feature attention lead to observed performance changes on detection tasks. I will also discuss the implications these results have for how we identify the neural mechanisms and architectures important for behavior.

We hardly notice when there is a speck on our glasses, the obstructed visual information seems to be magically filled in. The mechanistic basis for this fundamental perceptual phenomenon has, however, remained obscure. What enables neurons in the visual system to respond to context when the stimulus is not available? While feedforward information drives the activity in cortex, feedback information is thought to provide contextual signals that are merely modulatory. We have made the discovery that mouse primary visual cortical neurons are strongly driven by feedback projections from higher visual areas when their feedforward sensory input from the retina is missing. This drive is so strong that it makes visual cortical neurons fire as much as if they were receiving a direct sensory input. These signals are likely used to predict input from the feedforward pathway. Preliminary results show that these feedback projections are strongly influenced by experience and learning.

Research in the brain and cognitive sciences attempts to uncover the neural mechanisms underlying intelligent behavior in domains such as vision. Due to the complexities of brain processing, studies necessarily had to start with a narrow scope of experimental investigation and computational modeling. I argue that it is time for our field to take the next step: build system models that capture a range of visual intelligence behaviors along with the underlying neural mechanisms. To make progress on system models, we propose integrative benchmarking – integrating experimental results from many laboratories into suites of benchmarks that guide and constrain those models at multiple stages and scales. We show-case this approach by developing Brain-Score benchmark suites for neural (spike rates) and behavioral experiments in the primate visual ventral stream. By systematically evaluating a wide variety of model candidates, we not only identify models beginning to match a range of brain data (~50% explained variance), but also discover that models’ brain scores are predicted by their object categorization performance (up to 70% ImageNet accuracy). Using the integrative benchmarks, we develop improved state-of-the-art system models that more closely match shallow recurrent neuroanatomy and early visual processing to predict primate temporal processing and become more robust, and require fewer supervised synaptic updates. Taken together, these integrative benchmarks and system models are first steps to modeling the complexities of brain processing in an entire domain of intelligence.

To efficiently process sensory information, the brain relies on statistical regularities in the input. While generally improving the reliability of sensory estimates, this strategy also induces perceptual illusions that help reveal the underlying computational principles. Focusing on auditory and visual perception, in my talk I will describe how the brain exploits statistical regularities within and across the senses for the perception space, time and multisensory integration. In particular, I will show how results from a series of psychophysical experiments can be interpreted in the light of Bayesian Decision Theory, and I will demonstrate how such canonical computations can be implemented into simple and biologically plausible neural circuits. Finally, I will show how such principles of sensory information processing can be leveraged in virtual and augmented reality to overcome display limitations and expand human perception.

If we can make computers play chess and even Jeopardy and Go, then why can't we make them see like us? How does our brain solve the problem of seeing? I will describe some of our recent insights into understanding object recognition in the brain using behavioral, neuronal and computational methods.

To better understand human scene understanding, we extracted features from images using CLIP, a neural network model of visual concept trained with supervision from natural language. We then constructed voxelwise encoding models to explain whole brain responses arising from viewing natural images from the Natural Scenes Dataset (NSD) - a large-scale fMRI dataset collected at 7T. Our results reveal that CLIP, as compared to convolution based image classification models such as ResNet or AlexNet, as well as language models such as BERT, gives rise to representations that enable better prediction performance - up to a 0.86 correlation with test data and an r-square of 0.75 - in higher-level visual cortex in humans. Moreover, CLIP representations explain distinctly unique variance in these higher-level visual areas as compared to models trained with only images or text. Control experiments show that the improvement in prediction observed with CLIP is not due to architectural differences (transformer vs. convolution) or to the encoding of image captions per se (vs. single object labels). Together our results indicate that CLIP and, more generally, multimodal models trained jointly on images and text, may serve as better candidate models of representation in human higher-level visual cortex. The bridge between language and vision provided by jointly trained models such as CLIP also opens up new and more semantically-rich ways of interpreting the visual brain.

How do humans perceive daily objects of various features and categorize these seemingly intuitive and effortless mental representations? Prior literature focusing on the role of the inferotemporal region (IT) has revealed object category clustering that is consistent with the semantic predefined structure (superordinate, ordinate, subordinate). It has however been debated whether the neural signals in the IT regions are a reflection of such categorical hierarchy [Wen et al.,2018; Bracci et al., 2017]. Visual attributes of images that correlated with semantic and category dimensions may have confounded these prior results. Our study aimed to address this debate by building and comparing models using the DNN AlexNet, to explain the variance in representational dissimilarity matrix (RDM) of neural signals in the IT region. We found that mid and high level perceptual attributes of the DNN model contribute the most to neural RDMs in the IT region. Semantic categories, as in predefined structure, were moderately correlated with mid to high DNN layers (r = [0.24 - 0.36]). Variance partitioning analysis also showed that the IT neural representations were mostly explained by DNN layers, while semantic categorical RDMs brought little additional information. In light of these results, we propose future works should focus more on the specific role IT plays in facilitating the extraction and coding of visual features that lead to the emergence of categorical conceptualizations.

How our senses work both separately and together involves rich computational problems. I will discuss the spatial and representational problems faced by the visual and auditory system, focusing on two issues. 1. How does the brain correct for discrepancies in the visual and auditory spatial reference frames? I will describe our recent discovery of a novel type of otoacoustic emission, the eye movement related eardrum oscillation, or EMREO (Gruters et al, PNAS 2018). 2. How does the brain encode more than one stimulus at a time? I will discuss evidence for neural time-division multiplexing, in which neural activity fluctuates across time to allow representations to encode more than one simultaneous stimulus (Caruso et al, Nat Comm 2018). These findings all emerged from experimentally testing computational models regarding spatial representations and their transformations within and across sensory pathways. Further, they speak to several general problems confronting modern neuroscience such as the hierarchical organization of brain pathways and limits on perceptual/cognitive processing.

Perception of object motion is fundamentally multisensory, yet little is known about similarities and differences in the computations that give rise to our experience across senses. Insight can be provided by examining auditory motion processing in early blind individuals. In those who become blind early in life, the ‘visual’ motion area hMT+ responds to auditory motion. Meanwhile, the planum temporale, associated with auditory motion in sighted individuals, shows reduced selectivity for auditory motion, suggesting competition between cortical areas for functional role. According to the metamodal hypothesis of cross-modal plasticity developed by Pascual-Leone, the recruitment of hMT+ is driven by it being a metamodal structure containing “operators that execute a given function or computation regardless of sensory input modality”. Thus, the metamodal hypothesis predicts that the computations underlying auditory motion processing in early blind individuals should be analogous to visual motion processing in sighted individuals - relying on non-separable spatiotemporal filters. Inconsistent with the metamodal hypothesis, evidence suggests that the computational algorithms underlying auditory motion processing in early blind individuals fail to undergo a qualitative shift as a result of cross-modal plasticity. Auditory motion filters, in both blind and sighted subjects, are separable in space and time, suggesting that the recruitment of hMT+ to extract motion information from auditory input includes a significant modification of its normal computational operations.

Not all individuals are equally competent at recognizing the faces they interact with. Revealing how the brains of different individuals support variations in this ability is a crucial step to develop an understanding of real-world human visual behaviour. In this talk, I will present findings from a large high-density EEG dataset (>100k trials of participants processing various stimulus categories) and computational approaches which aimed to characterise the brain representations behind real-world proficiency of “super-recognizers”—individuals at the top of face recognition ability spectrum. Using decoding analysis of time-resolved EEG patterns, we predicted with high precision the trial-by-trial activity of super-recognizers participants, and showed that evidence for face recognition ability variations is disseminated along early, intermediate and late brain processing steps. Computational modeling of the underlying brain activity uncovered two representational signatures supporting higher face recognition ability—i) mid-level visual & ii) semantic computations. Both components were dissociable in brain processing-time (the first around the N170, the last around the P600) and levels of computations (the first emerging from mid-level layers of visual Convolutional Neural Networks, the last from a semantic model characterising sentence descriptions of images). I will conclude by presenting ongoing analyses from a well-known case of acquired prosopagnosia (PS) using similar computational modeling of high-density EEG activity.

Visual knowledge obtained from our lifelong experience of the world plays a critical role in our ability to build short-term memories. We propose a mechanistic explanation of how working memory (WM) representations are built from the latent representations of visual knowledge and can then be reconstructed. The proposed model, Memory for Latent Representations (MLR), features a variational autoencoder with an architecture that corresponds broadly to the human visual system and an activation-based binding pool of neurons that binds items’ attributes to tokenized representations. The simulation results revealed that shape information for stimuli that the model was trained on, can be encoded and retrieved efficiently from latents in higher levels of the visual hierarchy. On the other hand, novel patterns that are completely outside the training set can be stored from a single exposure using only latents from early layers of the visual system. Moreover, the representation of a given stimulus can have multiple codes, representing specific visual features such as shape or color, in addition to categorical information. Finally, we validated our model by testing a series of predictions against behavioral results acquired from WM tasks. The model provides a compelling demonstration of visual knowledge yielding the formation of compact visual representation for efficient memory encoding.

I am interested in developing a neurally mechanistic understanding of how primate brains represent the world through its visual system and how such representations enable a remarkable set of intelligent behaviors. In this talk, I will primarily highlight aspects of my current research that focuses on dissecting the brain circuits that support core object recognition behavior (primates’ ability to categorize objects within hundreds of milliseconds) in non-human primates. On the one hand, my work empirically examines how well computational models of the primate ventral visual pathways embed knowledge of the visual brain function (e.g., Bashivan*, Kar*, DiCarlo, Science, 2019). On the other hand, my work has led to various functional and architectural insights that help improve such brain models. For instance, we have exposed the necessity of recurrent computations in primate core object recognition (Kar et al., Nature Neuroscience, 2019), one that is strikingly missing from most feedforward artificial neural network models. Specifically, we have observed that the primate ventral stream requires fast recurrent processing via ventrolateral PFC for robust core object recognition (Kar and DiCarlo, Neuron, 2021). In addition, I have been currently developing various chemogenetic strategies to causally target specific bidirectional neural circuits in the macaque brain during multiple object recognition tasks to further probe their relevance during this behavior. I plan to transform these data and insights into tangible progress in neuroscience via my collaboration with various computational groups and building improved brain models of object recognition. I hope to end the talk with a brief glimpse of some of my planned future work!

I will begin by describing recent research taking a new, model-based approach to perceptual development. This approach uncovers fundamental changes in information processing underlying the protracted development of perception, action, and decision-making in childhood. For example, integration of multiple sensory estimates via reliability-weighted averaging – widely used by adults to improve perception – is often not seen until surprisingly late into childhood, as assessed by both behaviour and neural representations. This approach forms the basis for a newer question: the scope for the nervous system to deploy useful computations (e.g. reliability-weighted averaging) to optimise perception and action using newly-learned sensory signals provided by technology. Our initial model system is augmenting visual depth perception with devices translating distance into auditory or vibro-tactile signals. This problem has immediate applications to people with partial vision loss, but the broader question concerns our scope to use technology to tune in to any signal not available to our native biological receptors. I will describe initial progress on this problem, and our approach to operationalising what it might mean to adopt a new signal comparably to a native sense. This will include testing for its integration (weighted averaging) alongside the native senses, assessing the level at which this integration happens in the brain, and measuring the degree of ‘automaticity’ with which new signals are used, compared with native perception.

The eyes send a continuous stream of about two million nerve fibers to the brain, but only a fraction of this information is stored as visual memories. This talk will detail three neurocomputational models that attempt an understanding how the visual system makes on-the-fly decisions about how to encode that information. First, the STST family of models (Bowman & Wyble 2007; Wyble, Potter, Bowman & Nieuwenstein 2011) proposes mechanisms for temporal segmentation of continuous input. The conclusion of this work is that the visual system has mechanisms for rapidly creating brief episodes of attention that highlight important moments in time, and also separates each episode from temporally adjacent neighbors to benefit learning. Next, the RAGNAROC model (Wyble et al. 2019) describes a decision process for determining the spatial focus (or foci) of attention in a spatiotopic field and the neural mechanisms that provide enhancement of targets and suppression of highly distracting information. This work highlights the importance of integrating behavioral and electrophysiological data to provide empirical constraints on a neurally plausible model of spatial attention. The model also highlights how a neural circuit can make decisions in a continuous space, rather than among discrete alternatives. Finally, the binding pool (Swan & Wyble 2014; Hedayati, O’Donnell, Wyble in Prep) provides a mechanism for selectively encoding specific attributes (i.e. color, shape, category) of a visual object to be stored in a consolidated memory representation. The binding pool is akin to a holographic memory system that layers representations of select latent representations corresponding to different attributes of a given object. Moreover, it can bind features into distinct objects by linking them to token placeholders. Future work looks toward combining these models into a coherent framework for understanding the full measure of on-the-fly attentional mechanisms and how they improve learning.