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115 items · fMRI
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Position

Prof Li Zhaoping

Max-Planck-Institute for Biological Cybernetics
Tuebingen, Germany
Dec 5, 2025

The Department for Sensory and Sensorimotor Systems of the Max-Planck-Institute for Biological Cybernetics studies the processing of sensory information (visual, auditory, tactile, olfactory) in the brain and the use of this information for directing body movements and making cognitive decisions. The research is highly interdisciplinary and uses theoretical and experimental approaches in humans. Our methodologies include visual psychophysics, eye tracking, fMRI, EEG, TMS in humans. For more information, please visit the department website: www.lizhaoping.org We are currently looking for a Lab Mechatronics / Programmer/ Research and Admin Assistant (m/f/d) 100% to join us, this position is open until it is filled. The position: You will provide hardware, software, data taking, and managerial support for a diverse set of brain and neuroscience research activities. This includes: • Computer and IT support of Windows and Linux systems• Programming and debugging of computer code, especially at the stage of setting up new equipment or new experimental platforms • Provide technical, administrative, and operational support in the research data taking process. (The position holder should either have previous experience in visual psychophysics, or have the ability to quickly learn the data taking processes involved in the labs.) • Carry out or arrange for hardware repairs and troubleshooting• Equipment inventory and maintenance • Supervising and training of new equipment users • Setting up, updating and managing the database of knowledge and data from research projects, personnel and activities Our department is interdisciplinary, with research activities including human visual psychophysics, eye tracking, fMRI, EEG, TMS. We are looking for a person with a broad technical knowledge base, who loves working in a scientific environment and who is curious, open-minded, and able to adapt and learn new skills and solve new problems quickly. The set of skills that the individual should either already have or can quickly learn includes: MATLAB/Psychotoolbox, Python/OpenCV, Javascript, graphics and display technologies, EEG data taking techniques and similar, eye tracking, optics, electronics/controllers/sensors, etc. We offer: We offer highly interesting, challenging and varied tasks; you will work closely and collaboratively with scientists, students, programmers, administrative staff, and central IT and mechanical/electronic workshop support to help achieve the scientific goals of the department. An international environment with regular opportunities for further education and training awaits you. The salary is paid in accordance with the collective agreement for the public sector (TVöD Bund), based on qualification and experience and will include social security benefits and additional fringe benefits in accordance with public service provisions. This position is initially limited to two years, with the possibility of extensions and a permanent contract. The Max Planck Society seeks to employ more handicapped people and strongly encourages them to apply. Furthermore, we actively support the compatibility of work and family life. The Max Planck Society also seeks to increase the number of women in leadership positions and strongly encourages qualified women to apply. The Max Planck Society strives for gender equality and diversity. Your application: The position is available immediately and will be open until filled. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters electronically by e-mail to jobs.li@tuebingen.mpg.de, where informal inquiries can also be addressed to. Please note that incomplete applications will not be considered. For further opportunities in our group, please visit https://www.lizhaoping.org/jobs.html

Position

Prof Yashar Ahmadian

University of Cambridge
Cambridge, UK
Dec 5, 2025

We are seeking a highly motivated and creative postdoctoral researcher to work on a collaborative project between the labs of Yashar Ahmadian at the Computational and Biological Learning Lab (CBL), Department of Engineering (cbl-cambridge.org), and Zoe Kourtzi (www.abg.psychol.cam.ac.uk) at the Psychology Department, both at the University of Cambridge. The project is fully funded by the UKRI BBSRC and investigates the computational principles and circuit mechanisms underlying human visual perceptual learning, particularly the role of adaptative changes in the balance of cortical excitation and inhibition in this kind of learning. We aim to integrate a few lines of research in our labs, exemplified by the following key publications: Y Ahmadian and KD Miller (2021). What is the dynamical regime of cerebral cortex? Neuron 109 (21), 3373-3391. K Jia, ..., Z Kourtzi (2020). Recurrent Processing Drives Perceptual Plasticity. Current Biology 30 (21), 4177-4187. P Frangou, ..., Z Kourtzi (2019). Learning to optimize perceptual decisions through suppressive interactions in the human brain. Nature Communications 10, 474. Y Ahmadian, DB Rubin, KD Miller (2013). Analysis of the stabilized supralinear network. Neural Computation 25, 1994-2037. T Arakaki, GBarello, Y Ahmadian (2019). Inferring neural circuit structure from datasets of heterogeneous tuning curves. PLOS Comp Bio, 15(4): e1006816. The postdoc will be based in CBL, with free access to the Kourtzi lab in the Psychology department.

Position

Prof Yashar Ahmadian

University of Cambridge
Cambridge, UK
Dec 5, 2025

We are seeking a highly motivated and creative postdoctoral researcher to work on a collaborative project between the labs of Yashar Ahmadian at the Computational and Biological Learning Lab (CBL), Department of Engineering (cbl-cambridge.org), and Zoe Kourtzi (www.abg.psychol.cam.ac.uk) at the Psychology Department, both at the University of Cambridge. The project is fully funded by the UKRI BBSRC and investigates the computational principles and circuit mechanisms underlying human visual perceptual learning, particularly the role of adaptative changes in the balance of cortical excitation and inhibition in this kind of learning. We aim to integrate a few lines of research in our labs, exemplified by the following key publications: Y Ahmadian and KD Miller (2021). What is the dynamical regime of cerebral cortex? Neuron 109 (21), 3373-3391. K Jia, ..., Z Kourtzi (2020). Recurrent Processing Drives Perceptual Plasticity. Current Biology 30 (21), 4177-4187. P Frangou, ..., Z Kourtzi (2019). Learning to optimize perceptual decisions through suppressive interactions in the human brain. Nature Communications 10, 474. Y Ahmadian, DB Rubin, KD Miller (2013). Analysis of the stabilized supralinear network. Neural Computation 25, 1994-2037. T Arakaki, GBarello, Y Ahmadian (2019). Inferring neural circuit structure from datasets of heterogeneous tuning curves. PLOS Comp Bio, 15(4): e1006816. The postdoc will be based in CBL, with free access to the Kourtzi lab in the Psychology department. Apply at:https://www.jobs.ac.uk/job/DBD626/research-assistant-associate-in-computational-neuroscience-fixed-term

Position

Yashar Ahmadian

University of Cambridge
Cambridge, United Kingdom
Dec 5, 2025

We are seeking a highly motivated and creative postdoctoral researcher to work on a collaborative project between the labs of Yashar Ahmadian (https://www.cbl-cambridge.org/ahmadian) at the Computational and Biological Learning Lab (CBL -- https://cbl-cambridge.org, Engineering Department), and Zoe Kourtzi (https://www.abg.psychol.cam.ac.uk/) at the Psychology Department, both at the University of Cambridge. The project is funded by the UKRI BBSRC and investigates the computational principles and circuit mechanisms underlying human visual perceptual learning, particularly the role of adaptive changes in the balance of cortical excitation and inhibition resulting from perceptual learning. We aim to integrate a few lines of research in our labs, exemplified by the following key publications: Y Ahmadian and KD Miller (2021). What is the dynamical regime of cerebral cortex? Neuron 109 (21), 3373-3391. K Jia, ..., Z Kourtzi (2020). Recurrent Processing Drives Perceptual Plasticity. Current Biology 30 (21), 4177-4187. P Frangou, ..., Z Kourtzi (2019). Learning to optimize perceptual decisions through suppressive interactions in the human brain. Nature Communications 10, 474. Y Ahmadian, DB Rubin, KD Miller (2013). Analysis of the stabilized supralinear network. Neural Computation 25, 1994-2037. T Arakaki, GBarello, Y Ahmadian (2019). Inferring neural circuit structure from datasets of heterogeneous tuning curves. PLOS Comp Bio, 15(4): e1006816. The postdoc will be based in CBL, with free access to the Kourtzi lab in the Psychology department.

Position

Prof Yashar Ahmadian

University of Cambridge
Cambridge, UK
Dec 5, 2025

We are seeking a highly motivated and creative postdoctoral researcher to work on a collaborative project between the labs of Yashar Ahmadian at the Computational and Biological Learning Lab (CBL), Department of Engineering (cbl-cambridge.org), and Zoe Kourtzi (www.abg.psychol.cam.ac.uk) at the Psychology Department, both at the University of Cambridge. The project is fully funded by the UKRI BBSRC and investigates the computational principles and circuit mechanisms underlying human visual perceptual learning, particularly the role of adaptative changes in the balance of cortical excitation and inhibition in this kind of learning. We aim to integrate a few lines of research in our labs, exemplified by the following key publications: Y Ahmadian and KD Miller (2021). What is the dynamical regime of cerebral cortex? Neuron 109 (21), 3373-3391. K Jia, ..., Z Kourtzi (2020). Recurrent Processing Drives Perceptual Plasticity. Current Biology 30 (21), 4177-4187. P Frangou, ..., Z Kourtzi (2019). Learning to optimize perceptual decisions through suppressive interactions in the human brain. Nature Communications 10, 474. Y Ahmadian, DB Rubin, KD Miller (2013). Analysis of the stabilized supralinear network. Neural Computation 25, 1994-2037. T Arakaki, GBarello, Y Ahmadian (2019). Inferring neural circuit structure from datasets of heterogeneous tuning curves. PLOS Comp Bio, 15(4): e1006816. The postdoc will be based in CBL, with free access to the Kourtzi lab in the Psychology department.

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tuebingen
Tuebingen, Germany
Dec 5, 2025

Postdoctoral position in Human Psychophysics (m/f/d) – (TVöD Bund E13, 100%) The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using fMRI/MRI, TMS and/or EEG methodologies. The framework and motivation of the projects can be found at: https://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html.The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. fMRI/MRI, TMS and/or EEG methodologies can be used in combination with eye tracking, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Coordinate with the PI and other team members for strategies and project planning. • Coordinate with the PI and other team members for project planning, and in supervision of student projects or teaching assistance for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, electrophysiology and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn other skills in our multidisciplinary group and benefit from interactions with our colleagues in the university as well as internationally. This job opening is for the CIN or the MPI working group. The position (salary level TVöD-Bund E13, 100%) is for a duration of two years. Extension or a permanent contract after two years is possible depending on situations. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by May 31st, 2023. We look forward to receiving your application that includes (1) a cover letter, including a statement on roughly when you would like to start this position, (2) a motivation statement, (3) a CV, (4) names and contact details of three people for references, (5) if you have them, transcripts from your past and current education listing the courses taken and their grades, (6) if you have them, please also include copies of your degree certificates, (7) you may include a pdf file of your best publication(s), or other documents and information that you think could strengthen your application. Please use pdf files for these documents (and you may combine them into a single pdf file) and send to jobs.li@tuebingen.mpg.de, where also informal inquiries can be addressed. Please note that applications without complete information in (1)-(4) will not be considered, unless the cover letter includes an explanation and/or information about when the needed materials will be supplied. For further opportunities in our group, please visit www.lizhaoping.org/jobs.html

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tuebingen
Tuebingen, Germany
Dec 5, 2025

The Department for Sensory and Sensorimotor Systems of the Max-Planck-Institute for Biological Cybernetics studies the processing of sensory information (visual, auditory, tactile, olfactory) in the brain and the use of this information for directing body movements and making cognitive decisions. The research is highly interdisciplinary and uses theoretical and experimental approaches in humans. Our methodologies include visual psychophysics, eye tracking, fMRI, EEG, TMS in humans. For more information, please visit the department website: www.lizhaoping.org We are currently looking for a Research Operation Assistant with Scientific Experience (m/f/d) 100% to join us at the next possible opportunity. The position: You will provide hardware, software and managerial support for a diverse set of brain and neuroscience research activities. This includes: • Computer and IT support of Windows and Linux systems • Programming and debugging of computer code, especially at the stage of setting up new equipment or new experimental platforms • Provide technical, administrative, and operational support in the research data taking and analysis process. (The position holder should have the ability to quickly learn the data taking processes involved in the labs.) • Responsibility and free decision for purchases of laboratory equipment out to tender and evaluation of quotes with final decision making • Hardware repairs and troubleshooting including consultation of manufacturers, deliverers and scientific staff • Equipment setting up, inventory and maintenance • Supervising and training of new equipment users • Setting up, updating and managing the database of knowledge and data from research projects, personnel and activities to ensure smooth transition from one to another team member Our department is interdisciplinary, with research activities including human visual psychophysics, eye tracking, fMRI, EEG, TMS. We are looking for a person with a broad technical knowledge base, who loves working in a scientific environment and who is curious, open-minded, and able to adapt and learn new skills and solve new problems quickly. The set of skills that the individual should either already have or can quickly learn includes: MATLAB/Psychotoolbox, Python/OpenCV, Julia/OpenGL, Java, graphics and display technologies, EEG equipment and similar, eye tracking, optics, electronics/controllers/sensors, Arduino/Raspberry Pi, etc. We offer: We offer highly interesting, challenging and varied tasks; you will work closely and collaboratively with scientists, students, programmers, administrative staff, and central IT and mechanical/electronic workshop support to help achieve the scientific goals of the department. A dedicated team awaits you in an international environment with regular opportunities for further education and training. The salary is paid in accordance with the collective agreement for the public sector (TVöD Bund), based on qualification and experience and will include social security benefits and additional fringe benefits in accordance with public service provisions. This position is initially limited to two years, with the possibility of extensions and a permanent contract. The Max Planck Society seeks to employ more handicapped people and strongly encourages them to apply. Furthermore, we actively support the compatibility of work and family life. The Max Planck Society also seeks to increase the number of women in leadership positions and strongly encourages qualified women to apply. The Max Planck Society strives for gender equality and diversity. Your application The position is available immediately and will be open until filled. Preference will be given to applications received by April 3rd, 2023. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters electronically by e-mail to jobs.li@tuebingen.mpg.de, where informal inquiries can also be addressed to. Please note that incomplete applications will not be considered. For further opportunities in our group, please visit http://www.lizhaoping.org/jobs.html.

PositionNeuroscience

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

Postdoctoral position in Human Visual Psychophysics with fMRI/MRI, (m/f/d) (TVöD-Bund E13, 100%) The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using fMRI/MRI. The framework and motivation of the projects can be found at: https://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html. The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. fMRI/MRI technology can be used in combination with other methods such as eye tracking, TMS and/or EEG methodologies, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Coordinate with the PI and other team members for strategies and project planning. • Coordinate with the PI and other team members for project planning, and in supervision of student projects or teaching assistance for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, EEG/ERP, and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute (MPI) for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn other skills in our multidisciplinary group and benefit from interactions with our colleagues in the university, at MPI, as well as internationally. This job opening is for the CIN or the MPI working group. The position (salary level TVöD-Bund E13, 100%) is for a duration of two years. Extension or a permanent contract after two years is possible depending on situations. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by March 19th, 2023. We look forward to receiving your application that includes (1) a cover letter, including a statement on roughly when you would like to start this position, (2) a motivation statement, (3) a CV, (4) names and contact details of three people for references, (5) if you have them, transcripts from your past and current education listing the courses taken and their grades, (6) if you have them, please also include copies of your degree certificates, (7) you may include a pdf file of your best publication(s), or other documents and information that you think could strengthen your application. Please use pdf files for these documents (and you may combine them into a single pdf file) and send to jobs.li@tuebingen.mpg.de, where also informal inquiries can be addressed. Please note that applications without complete information in (1)-(4) will not be considered, unless the cover letter includes an explanation and/or information about when the needed materials will be supplied. For further opportunities in our group, please visit https://www.lizhaoping.org/jobs.html

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics
Tübingen, Germany
Dec 5, 2025

The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using fMRI/MRI, TMS and/or EEG methodologies. The framework and motivation of the projects can be found at: https://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html. The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. fMRI/MRI, TMS and/or EEG methodologies can be used in combination with eye tracking, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Coordinate with the PI and other team members for strategies and project planning. • Coordinate with the PI and other team members for project planning, and in supervision of student projects or teaching assistance for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, electrophysiology and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn other skills in our multidisciplinary group and benefit from interactions with our colleagues in the university as well as internationally. This job opening is for the CIN or the MPI working group. The position (salary level TVöD-Bund E13, 100%) is for a duration of two years, and renewable to additional years. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by November 30th, 2022. We look forward to receiving your application that includes (1) a cover letter, including a statement on roughly when you would like to start this position, (2) a motivation statement, (3) a CV, (4) names and contact details of three people for references, (5) if you have them, transcripts from your past and current education listing the courses taken and their grades, (6) if you have them, please also include copies of your degree certificates, (7) you may include a pdf file of your best publication(s), or other documents and information that you think could strengthen your application. Please use pdf files for these documents (and you may combine them into a single pdf file) and send to jobs.li@tuebingen.mpg.de, where also informal inquiries can be addressed. Please note that applications without complete information in (1)-(4) will not be considered, unless the cover letter includes an explanation and/or information about when the needed materials will be supplied. For further opportunities in our group, please visit https://www.lizhaoping.org/jobs.html

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics
Tübingen, Germany
Dec 5, 2025

The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using fMRI/MRI, TMS and/or EEG methodologies. The framework and motivation of the projects can be found at https://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html. The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. fMRI/MRI, TMS and/or EEG methodologies can be used in combination with eye tracking, and other related methods as necessary. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Participate in teaching assistance duties for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, EEG, electrophysiology and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn skills from other members of the group and benefit from multidisciplinary interactions, including with our collaborators locally and internationally. The PhD contract (TVöD-Bund E13, 65%) duration is for 3 years. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by November 30th, 2022. We look forward to receiving your application that includes (1) a cover letter, including a statement on roughly when you would like to start this position, (2) a motivation statement, (3) a CV, (4) names and contact details of three people for references, (5) transcripts from your past and current education listing the courses taken and their grades, (6) if you have them, please also include copies of your degree certificates, (7) if you have them, include a pdf file of your best publication(s), or other documents and information that you think could strengthen your application. Please use pdf files for these documents (and you may combine them into a single pdf file) and send to jobs.li@tuebingen.mpg.de, where also informal inquiries can be addressed. Please note that applications without complete information in (1)-(5) will not be considered, unless the cover letter includes an explanation and/or information about when the needed materials will be supplied. For further opportunities in our group, please visit https://www.lizhaoping.org/jobs.html

Position

Ing. Mgr. Jaroslav Hlinka, Ph.D.

Institute of Computer Science of the Czech Academy of Sciences
Prague, Czech Republic
Dec 5, 2025

Research Fellow / Postdoc positions in Complex Networks and Brain Dynamics We are looking for new team members to join the Complex Networks and Brain Dynamics group to work on its interdisciplinary projects. The group is part of the Department of Complex Systems, Institute of Computer Science of the Czech Academy of Sciences - based in Prague, Czech Republic, https://www.cs.cas.cz/. We focus on the development and application of methods of analysis and modelling of real-world complex networked systems, with particular interest in the structure and dynamics of human brain function. Our main research areas are neuroimaging data analysis (fMRI & EEG, iEEG, anatomical and diffusion MRI), brain dynamics modelling, causality and information flow inference, nonlinearity and nonstationarity, graph theory, machine learning and multivariate statistics; with applications in neuroscience, climate research, economics and general communication networks. More information about the group at http://cobra.cs.cas.cz/. Conditions: • Contract is for 6-24 months duration. • Positions are available immediately or upon agreement. • Applications will be reviewed on a rolling basis with a first cut-off point on 30. 09. 2022, until the positions are filled. • This is a full-time fixed term contract appointment. Part time contract negotiable. • Monthly gross salary: 42 000 – 55 000 CZK based on qualifications and experience. Cost Of Living Comparison • Bonuses and travel funding for conferences and research stays depending on performance. • No teaching duties.

Position

Dr Marc Aurel Busche & Prof David Sharp

University College London & Imperial College London
London
Dec 5, 2025

This is a joint postdoctoral position between Prof David Sharp’s laboratory (based at the UK DRI CR&T Centre), focused on the long-term neurodegenerative effects of traumatic brain injury, and Dr Marc Aurel Busche’s laboratory (based at the UK DRI at UCL), which has been at the forefront of developing tools permitting multi-scale and multi-modal monitoring of large-scale neural circuits in models of dementia. The main goal of the project will be to examine the effects of traumatic brain injury on neuronal circuit and neurovascular function in vivo, how this may accelerate molecular and cellular processes linked to Alzheimer’s Disease (the most common cause of dementia) and determine whether the pathophysiology is reversible. The project will involve recording neuronal activity and vascular dynamics using state of the art two-photon and electrophysiological (Neuropixels) methods and also linking this to available human datasets (e.g., fMRI). The successful candidate will be self-directed with excellent research skills, and capable of working collaboratively within a team of international multidisciplinary researchers, while displaying independent thinking and initiative. This is an outstanding opportunity to work independently on a high impact, state-of-the-art collaborative and cross-species project in a stimulating and vibrant research environment. The post is available immediately and is funded by a UK DRI Cross-Centre Postdoctoral award for two years in the first instance. For more information, and to apply please see: https://bit.ly/3qOulVp

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

Postdoctoral position in Human Psychophysics with TMS and/or EEG (m/f/d) (TVöD-Bund E13, 100%) The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using TMS and/or EEG methodologies. The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html.The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. TMS and/or EEG methodologies can be used in combination with fMRI/MRI, eye tracking, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Coordinate with the PI and other team members for strategies and project planning. • Coordinate with the PI and other team members for project planning, and in supervision of student projects or teaching assistance for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, electrophysiology and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn other skills in our multidisciplinary group and benefit from interactions with our colleagues in the university as well as internationally. This job opening is for the CIN or the MPI working group. The position (salary level TVöD-Bund E13, 100%) is for a duration of two years, and renewable to additional years. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by June 5th, 2022. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters) electronically through our job portal: https://jobs.tue.mpg.de/jobs/169. Informal inquiries can be addressed to jobs.li@tuebingen.mpg.de. Please note that incomplete applications will not be considered.

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

The Department of Sensory and Sensorimotor Systems (PI Prof. Li Zhaoping) at the Max Planck Institute for Biological Cybernetics and at the University of Tübingen is currently looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using TMS and/or EEG methodologies. The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html. The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. TMS and/or EEG methodologies can be used in combination with fMRI/MRI, eye tracking, and other related methods as necessary. Responsibilities: • Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. • Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. • Participate in teaching assistance duties for university courses in our field. Who we are: We use a multidisciplinary approach to investigate sensory and sensory-motor transforms in the brain (www.lizhaoping.org). Our approaches consist of both theoretical and experimental techniques including human psychophysics, fMRI imaging, electrophysiology and computational modelling. One part of our group is located in the University, in the Centre for Integrative Neurosciences (CIN), and the other part is in the Max Planck Institute for Biological Cybernetics as the Department for Sensory and Sensorimotor Systems. You will have the opportunity to learn skills from other members of the group and benefit from multidisciplinary interactions, including with our collaborators locally and internationally. The PhD contract (TVöD-Bund E13, 65%) duration is for 3 years. We seek to raise the number of women in research and teaching and therefore urge qualified women to apply. Disabled persons will be preferred in case of equal qualification. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by June 5th, 2022. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters) electronically through our job portal: https://jobs.tue.mpg.de/jobs/170 Informal inquiries can be addressed to jobs.li@tuebingen.mpg.de. Please note that incomplete applications will not be considered.

Position

Prof Tim C Kietzmann

Institute of Cognitive Science, University of Osnabrück
Osnabrück, Germany
Dec 5, 2025

I am looking to hire multiple postdocs in the space of deep learning and visual computational neuroscience to join us at the institute of cognitive science (University of Osnabrück, Germany). The full-time position is initially for 3 years, but can be extended. You can find out more about our work here: https://www.kietzmannlab.org/ More information about these positions and research in Germany more generally: https://twitter.com/TimKietzmann/status/1482027695856828417 These jobs are not officially advertised yet, so please get in touch with me to start a discussion.

Position

Jorge Almeida (Proaction Lab)

Proaction Lab (University of Coimbra)
Coimbra, Portugal
Dec 5, 2025

The Proaction Laboratory (Jorge Almeida’s Lab; proactionlab.fpce.uc.pt) at the University of Coimbra (www.uc.pt), Portugal is looking for 3 motivated and bright Research Assistants to work on a prestigious ERC Starting Grant project (ContentMAP; https://cordis.europa.eu/project/id/802553) on the neural organization of object knowledge. In this project we are exploring how complex information is topographically organized in the brain using fMRI and state of the art analytical techniques, as well as computational approaches, and neuromodulation. We strongly and particularly encourage applications from women, and from underrepresented groups in academia. General Requirements for the positions: 1. Candidates should have a BA and/or MA in Psychology, Cognitive Neuroscience, Computer Science, Computational Neuroscience or any other related field as long as their work relates to the specific profiles below. 2. They should already have their diplomas (so that we can start the process of recognition in Portugal, which is a necessary step for hiring). 3. Interest in object recognition and neural representation. 5. Very good English (oral and written) communicative skills are necessary. Specific requirements for the positions: 1. Understanding of and experience with fMRI and data analysis, and specifically with MVPA. 2. Strong programming skills (matlab, python, etc.) are a requirement. Salary and duration: The position will start as soon as possible and finish in January 2024. The salary is the standard for a PhD student in Portugal – about 1100 per month tax free. Note that cost of living in Portugal (and particularly in Coimbra) is low compared to major European and American cities. Working conditions: The researcher will work directly with Jorge Almeida in Coimbra. The researcher will also be encouraged to develop her/his own projects and look for additional funding so that the stay can be extended. In fact, the expectation is that the applicants start a PhD one year after starting their positions. We have access to 2 3T MRI scanner with a 32-channel coil, to tDCS with neuronavigation, and to a fully set psychophysics lab. We have EEG and eyetracking on site. We also have access, through other collaborations, to a 7T scanner. Finally, the University of Coimbra is a 700 year old University and has been selected as a UNESCO world Heritage site. Coimbra is one of the most lively university cities in the world, and it is a beautiful city with easy access to the beach and mountain. How can I apply: Applicants are encouraged to apply as soon as possible as these positions will be closed as they are filled. Nevertheless, the deadline in May 15. The interested candidates should email Jorge Almeida for questions and applications. Please send an email (jorgealmeida@fpce.uc.pt) with the subject “Research assistant positions under ERC - ContentMAP” with: 1. The Curriculum Vitae with a list of publications, 2. 2 Reference letters 3. A motivation letter with a short description of your experience in the field and how you fulfill the requirements (fit with the position).

Position

Prof David Brang

University of Michigan
Ann Arbor, Michigan
Dec 5, 2025

We are seeking a full-time post-doctoral research fellow to study computational and neuroscientific models of perception and cognition. The research fellow will be jointly supervised by Dr. David Brang (https://sites.lsa.umich.edu/brang-lab/) and Zhongming Liu (https://libi.engin.umich.edu). The goal of this collaboration is to build computational models of cognitive and perceptual processes using data combined from electrocorticography (ECoG) and fMRI. The successful applicant will also have freedom to conduct additional research based on their interests, using a variety of methods -- ECoG, fMRI, DTI, lesion mapping, and EEG. The ideal start date is from spring to fall 2021 and the position is expected to last for at least two years, with the possibility of extension for subsequent years. We are also recruiting a Post-Doc for research on multisensory interactions (particularly how vision modulates speech perception) using Cognitive Neuroscience techniques or to help with our large-scale brain tumor collaboration with Shawn Hervey-Jumper at UCSF (https://herveyjumperlab.ucsf.edu). In this latter collaboration we collect iEEG (from ~50 patients/year) and lesion mapping data (from ~150 patients/year) in patients with a brain tumor to study sensory and cognitive functions in patients. The goals of this project are to better understand the physiology of tumors, study causal mechanisms of brain functions, and generalize iEEG/ECoG findings from epilepsy patients to a second patient population.

Position

Drs. David Brang and Zhongming Liu

University of Michigan
Ann Arbor, Michigan, United States
Dec 5, 2025

We are seeking a full-time post-doctoral research fellow to study computational and neuroscientific models of perception and cognition. The research fellow will be jointly supervised by Dr. David Brang (https://sites.lsa.umich.edu/brang-lab/) and Zhongming Liu (https://libi.engin.umich.edu). The goal of this collaboration is to build computational models of cognitive and perceptual processes using data combined from electrocorticography (ECoG) and fMRI. The successful applicant will also have freedom to conduct additional research based on their interests, using a variety of methods -- ECoG, fMRI, DTI, lesion mapping, and EEG. The ideal start date is from spring to fall 2021 and the position is expected to last for at least two years, with the possibility of extension for subsequent years. Interested applicants should email their CV, a cover letter describing their research interests and career goals, and contact information for 2-3 references to Drs. David Brang (djbrang@umich.edu) and Zhongming Liu (zmliu@umich.edu).

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

Postdoctoral position in Human Psychophysics with TMS and/or EEG (m/f/d) (TV-L E13, 100%) Faculty of Science, University of Tübingen and Max Planck Institute for Biological Cybernetics, working group of Prof. Li Zhaoping. We are looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using TMS and/or EEG methodologies. The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html . The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. TMS and/or EEG methodologies can be used in combination with fMRI/MRI, eye tracking, and other related methods as necessary. The postdoc will be working closely with the principal investigator and other members of Zhaoping's team when needed. We are currently hiring for a Postdoctoral position in Human Psychophysics with TMS and/or EEG (m/f/d) (TV-L E13, 100%) to join us at the next possible opportunity. Responsibilities: - Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. - Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. - Coordinate with the PI and other team members for strategies and project planning. - Coordinate with the PI and other team members for project planning, and in supervision of student projects or teaching assistance for university courses in our field. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by November 30, 2021. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters) electronically only through this job portal (https://jobs.tue.mpg.de/jobs/148). Informal inquiries can be addressed to jobs.li@tuebingen.mpg.de. Please note that incomplete applications will not be considered.

Position

Dr. Thad Polk

University of Michigan
Ann Arbor, USA
Dec 5, 2025

The Computational and Cognitive Neuroscience Lab, directed by Dr. Thad Polk, is seeking a Postdoctoral Research Fellow to work on NIH-funded projects investigating the effects of age on neural representations, using functional MRI (fMRI), magnetic resonance spectroscopy (MRS), and behavioral methods. Interested candidates should submit one document including a cover letter describing their research background and interests, a CV, and the names of three references. Applications will be considered until the position is filled. Apply here: https://careers.umich.edu/job_detail/204576/research_fellow_-_polk_lab

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

PhD position in Human Psychophysics with TMS and/or EEG (m/f/d) (TV-L E13, 65%) Faculty of Science, University of Tübingen and Max Planck Institute for Biological Cybernetics, working group of Prof. Li Zhaoping. We are looking for highly skilled and motivated individuals to work on projects aimed towards understanding visual attentional and perceptual processes using TMS and/or EEG methodologies. The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html . The projects can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. TMS and/or EEG methodologies can be used in combination with fMRI/MRI, eye tracking, and other related methods as necessary. We are currently hiring for a PhD position in Human Psychophysics with TMS and/or EEG (TV-L E13) 65% to join us at the next possible opportunity. Responsibilities: - Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. - Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. - Participate in teaching assistance duties for university courses in our field. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by November 30, 2021. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters) electronically only through this job portal (https://jobs.tue.mpg.de/jobs/147). Informal inquiries can be addressed to jobs.li@tuebingen.mpg.de. Please note that incomplete applications will not be considered.

Position

Prof. Li Zhaoping

Max-Planck-Institute for Biological Cybernetics and University of Tübingen
Tübingen, Germany
Dec 5, 2025

Postdoctoral position in Human Psychophysics with High field and/or 3T fMRI (TVöD-Bund E13, 100%) Max Planck Institute for Biological Cybernetics, department of Prof. Li Zhaoping (Dept of Sensory and Sensormotor systems), in collaboration with Prof. Klaus Scheffler (Dept of High-field magnetic resonance imaging), is looking for a highly skilled and motivated individual to work on projects to probe the hierarchical feedforward and feedback brain networks behind visual attentional and perceptual processes using human psychophysics techniques and High-field or 3T fMRI methodologies (e.g., laminar fMRI). The framework and motivation of the projects can be found at http://www.lizhaoping.org/zhaoping/AGZL_HumanVisual.html . The visual processes can involve, for example, visual search tasks, stereo vision tasks, visual illusions, and will be discussed during the application process. When needed, TMS and/or EEG, eye tracking, and other methodologies can be used in combination with fMRI/MRI. The postdoc will be working closely with the principal investigators and other members of their teams. We are currently hiring for a Postdoctoral position in Human Psychophysics with High field and/or 3T fMRI (m/f/d) (TV-L E13, 100%) to join us at the next opportunity. Responsibilities: - Conduct and participate in research projects such as lab and equipment set up, data collection, data analysis, writing reports and papers, and presenting at scientific conferences. - Participate in routine laboratory operations, such as planning and preparations for experiments, lab maintenance and lab procedures. - Coordinate with the PIs and other team members for strategies and project planning.- Participate in mentoring and supervision of student projects. Your application: The position is available immediately and will be open until filled. Preference will be given to applications received by November 30, 2021. We look forward to receiving your application that includes a cover letter, your curriculum vitae, relevant certificates, and three names and contacts for reference letters) electronically only through this job portal (https://jobs.tue.mpg.de/jobs/149). Informal inquiries can be addressed to jobs.li@tuebingen.mpg.de. Please note that incomplete applications will not be considered.

Position

SISSA cognitive neuroscience PhD

International School for Advanced Studies (SISSA)
Trieste
Dec 5, 2025

Up to 2 PhD positions in Cognitive Neuroscience are available at SISSA, Trieste, starting October 2024. SISSA is an elite postgraduate research institution for Maths, Physics and Neuroscience, located in Trieste, Italy. SISSA operates in English, and its faculty and student community is diverse and strongly international. The Cognitive Neuroscience group (https://phdcns.sissa.it/) hosts 6 research labs that study the neuronal bases of time and magnitude processing, visual perception, motivation and intelligence, language, tactile perception and learning, and neural computation. Our research is highly interdisciplinary; our approaches include behavioural, psychophysics, and neurophysiological experiments with humans and animals, as well as computational, statistical and mathematical models. Students from a broad range of backgrounds (physics, maths, medicine, psychology, biology) are encouraged to apply. The selection procedure is now open. The application deadline is 27 August 2024. Please apply here (https://www.sissa.it/bandi/ammissione-ai-corsi-di-philosophiae-doctor-posizioni-cofinanziate-dal-fondo-sociale-europeo), and see the admission procedure page (https://phdcns.sissa.it/admission-procedure) for more information. Note that the positions available for the Fall admission round are those funded by the "Fondo Sociale Europeo Plus", accessible through the first link above. Please contact the PhD Coordinator Mathew Diamond (diamond@sissa.it) and/or your prospective supervisor for more information and informal inquiries.

SeminarNeuroscience

OpenNeuro FitLins GLM: An Accessible, Semi-Automated Pipeline for OpenNeuro Task fMRI Analysis

Michael Demidenko
Stanford University
Jul 31, 2025

In this talk, I will discuss the OpenNeuro Fitlins GLM package and provide an illustration of the analytic workflow. OpenNeuro FitLins GLM is a semi-automated pipeline that reduces barriers to analyzing task-based fMRI data from OpenNeuro's 600+ task datasets. Created for psychology, psychiatry and cognitive neuroscience researchers without extensive computational expertise, this tool automates what is largely a manual process and compilation of in-house scripts for data retrieval, validation, quality control, statistical modeling and reporting that, in some cases, may require weeks of effort. The workflow abides by open-science practices, enhancing reproducibility and incorporates community feedback for model improvement. The pipeline integrates BIDS-compliant datasets and fMRIPrep preprocessed derivatives, and dynamically creates BIDS Statistical Model specifications (with Fitlins) to perform common mass univariate [GLM] analyses. To enhance and standardize reporting, it generates comprehensive reports which includes design matrices, statistical maps and COBIDAS-aligned reporting that is fully reproducible from the model specifications and derivatives. OpenNeuro Fitlins GLM has been tested on over 30 datasets spanning 50+ unique fMRI tasks (e.g., working memory, social processing, emotion regulation, decision-making, motor paradigms), reducing analysis times from weeks to hours when using high-performance computers, thereby enabling researchers to conduct robust single-study, meta- and mega-analyses of task fMRI data with significantly improved accessibility, standardized reporting and reproducibility.

SeminarNeuroscience

Analyzing Network-Level Brain Processing and Plasticity Using Molecular Neuroimaging

Alan Jasanoff
Massachusetts Institute of Technology
Jan 27, 2025

Behavior and cognition depend on the integrated action of neural structures and populations distributed throughout the brain. We recently developed a set of molecular imaging tools that enable multiregional processing and plasticity in neural networks to be studied at a brain-wide scale in rodents and nonhuman primates. Here we will describe how a novel genetically encoded activity reporter enables information flow in virally labeled neural circuitry to be monitored by fMRI. Using the reporter to perform functional imaging of synaptically defined neural populations in the rat somatosensory system, we show how activity is transformed within brain regions to yield characteristics specific to distinct output projections. We also show how this approach enables regional activity to be modeled in terms of inputs, in a paradigm that we are extending to address circuit-level origins of functional specialization in marmoset brains. In the second part of the talk, we will discuss how another genetic tool for MRI enables systematic studies of the relationship between anatomical and functional connectivity in the mouse brain. We show that variations in physical and functional connectivity can be dissociated both across individual subjects and over experience. We also use the tool to examine brain-wide relationships between plasticity and activity during an opioid treatment. This work demonstrates the possibility of studying diverse brain-wide processing phenomena using molecular neuroimaging.

SeminarNeuroscience

LLMs and Human Language Processing

Maryia Toneva, Ariel Goldstein, Jean-Remi King
Max Planck Institute of Software Systems; Hebrew University; École Normale Supérieure
Nov 28, 2024

This webinar convened researchers at the intersection of Artificial Intelligence and Neuroscience to investigate how large language models (LLMs) can serve as valuable “model organisms” for understanding human language processing. Presenters showcased evidence that brain recordings (fMRI, MEG, ECoG) acquired while participants read or listened to unconstrained speech can be predicted by representations extracted from state-of-the-art text- and speech-based LLMs. In particular, text-based LLMs tend to align better with higher-level language regions, capturing more semantic aspects, while speech-based LLMs excel at explaining early auditory cortical responses. However, purely low-level features can drive part of these alignments, complicating interpretations. New methods, including perturbation analyses, highlight which linguistic variables matter for each cortical area and time scale. Further, “brain tuning” of LLMs—fine-tuning on measured neural signals—can improve semantic representations and downstream language tasks. Despite open questions about interpretability and exact neural mechanisms, these results demonstrate that LLMs provide a promising framework for probing the computations underlying human language comprehension and production at multiple spatiotemporal scales.

SeminarNeuroscience

Introducing the 'Cognitive Neuroscience & Neurotechnolog' group: From real-time fMRI to layer-fMRI & back

Romy Lorenz
Max Planck Institute for Biological Cybernetics, Tübingen
Nov 27, 2024
SeminarPsychology

Exploring Lifespan Memory Development and Intervention Strategies for Memory Decline through a Unified Model-Based Assessment

Anaïs Capik
University of Washington
May 5, 2024

Understanding and potentially reversing memory decline necessitates a comprehensive examination of memory's evolution throughout life. Traditional memory assessments, however, suffer from a lack of comparability across different age groups due to the diverse nature of the tests employed. Addressing this gap, our study introduces a novel, ACT-R model-based memory assessment designed to provide a consistent metric for evaluating memory function across a lifespan, from 5 to 85-year-olds. This approach allows for direct comparison across various tasks and materials tailored to specific age groups. Our findings reveal a pronounced U-shaped trajectory of long-term memory function, with performance at age 5 mirroring those observed in elderly individuals with impairments, highlighting critical periods of memory development and decline. Leveraging this unified assessment method, we further investigate the therapeutic potential of rs-fMRI-guided TBS targeting area 8AV in individuals with early-onset Alzheimer’s Disease—a region implicated in memory deterioration and mood disturbances in this population. This research not only advances our understanding of memory's lifespan dynamics but also opens new avenues for targeted interventions in Alzheimer’s Disease, marking a significant step forward in the quest to mitigate memory decay.

SeminarNeuroscienceRecording

Executive functions in the brain of deaf individuals – sensory and language effects

Velia Cardin
UCL
Mar 20, 2024

Executive functions are cognitive processes that allow us to plan, monitor and execute our goals. Using fMRI, we investigated how early deafness influences crossmodal plasticity and the organisation of executive functions in the adult human brain. Results from a range of visual executive function tasks (working memory, task switching, planning, inhibition) show that deaf individuals specifically recruit superior temporal “auditory” regions during task switching. Neural activity in auditory regions predicts behavioural performance during task switching in deaf individuals, highlighting the functional relevance of the observed cortical reorganisation. Furthermore, language grammatical skills were correlated with the level of activation and functional connectivity of fronto-parietal networks. Together, these findings show the interplay between sensory and language experience in the organisation of executive processing in the brain.

SeminarNeuroscienceRecording

Human Echolocation for Localization and Navigation – Behaviour and Brain Mechanisms

Lore Thaler
Durham University
Feb 14, 2024
SeminarNeuroscience

Neuromodulation of striatal D1 cells shapes BOLD fluctuations in anatomically connected thalamic and cortical regions

Marija Markicevic
Yale
Jan 17, 2024

Understanding how macroscale brain dynamics are shaped by microscale mechanisms is crucial in neuroscience. We investigate this relationship in animal models by directly manipulating cellular properties and measuring whole-brain responses using resting-state fMRI. Specifically, we explore the impact of chemogenetically neuromodulating D1 medium spiny neurons in the dorsomedial caudate putamen (CPdm) on BOLD dynamics within a striato-thalamo-cortical circuit in mice. Our findings indicate that CPdm neuromodulation alters BOLD dynamics in thalamic subregions projecting to the dorsomedial striatum, influencing both local and inter-regional connectivity in cortical areas. This study contributes to understanding structure–function relationships in shaping inter-regional communication between subcortical and cortical levels.

SeminarNeuroscience

Trends in NeuroAI - Meta's MEG-to-image reconstruction

Reese Kneeland
Jan 4, 2024

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). Title: Brain-optimized inference improves reconstructions of fMRI brain activity Abstract: The release of large datasets and developments in AI have led to dramatic improvements in decoding methods that reconstruct seen images from human brain activity. We evaluate the prospect of further improving recent decoding methods by optimizing for consistency between reconstructions and brain activity during inference. We sample seed reconstructions from a base decoding method, then iteratively refine these reconstructions using a brain-optimized encoding model that maps images to brain activity. At each iteration, we sample a small library of images from an image distribution (a diffusion model) conditioned on a seed reconstruction from the previous iteration. We select those that best approximate the measured brain activity when passed through our encoding model, and use these images for structural guidance during the generation of the small library in the next iteration. We reduce the stochasticity of the image distribution at each iteration, and stop when a criterion on the "width" of the image distribution is met. We show that when this process is applied to recent decoding methods, it outperforms the base decoding method as measured by human raters, a variety of image feature metrics, and alignment to brain activity. These results demonstrate that reconstruction quality can be significantly improved by explicitly aligning decoding distributions to brain activity distributions, even when the seed reconstruction is output from a state-of-the-art decoding algorithm. Interestingly, the rate of refinement varies systematically across visual cortex, with earlier visual areas generally converging more slowly and preferring narrower image distributions, relative to higher-level brain areas. Brain-optimized inference thus offers a succinct and novel method for improving reconstructions and exploring the diversity of representations across visual brain areas. Speaker: Reese Kneeland is a Ph.D. student at the University of Minnesota working in the Naselaris lab. Paper link: https://arxiv.org/abs/2312.07705

SeminarNeuroscience

Trends in NeuroAI - Meta's MEG-to-image reconstruction

Paul Scotti
Dec 6, 2023

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). This will be an informal journal club presentation, we do not have an author of the paper joining us. Title: Brain decoding: toward real-time reconstruction of visual perception Abstract: In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with remarkable fidelity. This neuroimaging technique, however, suffers from a limited temporal resolution (≈0.5 Hz) and thus fundamentally constrains its real-time usage. Here, we propose an alternative approach based on magnetoencephalography (MEG), a neuroimaging device capable of measuring brain activity with high temporal resolution (≈5,000 Hz). For this, we develop an MEG decoding model trained with both contrastive and regression objectives and consisting of three modules: i) pretrained embeddings obtained from the image, ii) an MEG module trained end-to-end and iii) a pretrained image generator. Our results are threefold: Firstly, our MEG decoder shows a 7X improvement of image-retrieval over classic linear decoders. Second, late brain responses to images are best decoded with DINOv2, a recent foundational image model. Third, image retrievals and generations both suggest that MEG signals primarily contain high-level visual features, whereas the same approach applied to 7T fMRI also recovers low-level features. Overall, these results provide an important step towards the decoding - in real time - of the visual processes continuously unfolding within the human brain. Speaker: Dr. Paul Scotti (Stability AI, MedARC) Paper link: https://arxiv.org/abs/2310.19812

SeminarNeuroscience

Current and future trends in neuroimaging

Andy Jahn
fMRI Lab, University of Michigan
Dec 6, 2023

With the advent of several different fMRI analysis tools and packages outside of the established ones (i.e., SPM, AFNI, and FSL), today's researcher may wonder what the best practices are for fMRI analysis. This talk will discuss some of the recent trends in neuroimaging, including design optimization and power analysis, standardized analysis pipelines such as fMRIPrep, and an overview of current recommendations for how to present neuroimaging results. Along the way we will discuss the balance between Type I and Type II errors with different correction mechanisms (e.g., Threshold-Free Cluster Enhancement and Equitable Thresholding and Clustering), as well as considerations for working with large open-access databases.

SeminarNeuroscience

Trends in NeuroAI - SwiFT: Swin 4D fMRI Transformer

Junbeom Kwon
Nov 20, 2023

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). Title: SwiFT: Swin 4D fMRI Transformer Abstract: Modeling spatiotemporal brain dynamics from high-dimensional data, such as functional Magnetic Resonance Imaging (fMRI), is a formidable task in neuroscience. Existing approaches for fMRI analysis utilize hand-crafted features, but the process of feature extraction risks losing essential information in fMRI scans. To address this challenge, we present SwiFT (Swin 4D fMRI Transformer), a Swin Transformer architecture that can learn brain dynamics directly from fMRI volumes in a memory and computation-efficient manner. SwiFT achieves this by implementing a 4D window multi-head self-attention mechanism and absolute positional embeddings. We evaluate SwiFT using multiple large-scale resting-state fMRI datasets, including the Human Connectome Project (HCP), Adolescent Brain Cognitive Development (ABCD), and UK Biobank (UKB) datasets, to predict sex, age, and cognitive intelligence. Our experimental outcomes reveal that SwiFT consistently outperforms recent state-of-the-art models. Furthermore, by leveraging its end-to-end learning capability, we show that contrastive loss-based self-supervised pre-training of SwiFT can enhance performance on downstream tasks. Additionally, we employ an explainable AI method to identify the brain regions associated with sex classification. To our knowledge, SwiFT is the first Swin Transformer architecture to process dimensional spatiotemporal brain functional data in an end-to-end fashion. Our work holds substantial potential in facilitating scalable learning of functional brain imaging in neuroscience research by reducing the hurdles associated with applying Transformer models to high-dimensional fMRI. Speaker: Junbeom Kwon is a research associate working in Prof. Jiook Cha’s lab at Seoul National University. Paper link: https://arxiv.org/abs/2307.05916

SeminarNeuroscience

NII Methods (journal club): NeuroQuery, comprehensive meta-analysis of human brain mapping

Andy Jahn
fMRI Lab, University of Michigan
Oct 5, 2023

We will discuss a recent paper by Taylor et al. (2023): https://www.sciencedirect.com/science/article/pii/S1053811923002896. They discuss the merits of highlighting results instead of hiding them; that is, clearly marking which voxels and clusters pass a given significance threshold, but still highlighting sub-threshold results, with opacity proportional to the strength of the effect. They use this to illustrate how there in fact may be more agreement between researchers than previously thought, using the NARPS dataset as an example. By adopting a continuous, "highlighted" approach, it becomes clear that the majority of effects are in the same location and that the effect size is in the same direction, compared to an approach that only permits rejecting or not rejecting the null hypothesis. We will also talk about the implications of this approach for creating figures, detecting artifacts, and aiding reproducibility.

SeminarNeuroscience

BrainLM Journal Club

Connor Lane
Sep 28, 2023

Connor Lane will lead a journal club on the recent BrainLM preprint, a foundation model for fMRI trained using self-supervised masked autoencoder training. Preprint: https://www.biorxiv.org/content/10.1101/2023.09.12.557460v1 Tweeprint: https://twitter.com/david_van_dijk/status/1702336882301112631?t=Q2-U92-BpJUBh9C35iUbUA&s=19

SeminarNeuroscience

NII Methods (journal club): NeuroQuery, comprehensive meta-analysis of human brain mapping

Andy Jahn
fMRI Lab, University of Michigan
Aug 31, 2023

We will discuss this paper on Neuroquery, a relatively new web-based meta-analysis tool: https://elifesciences.org/articles/53385.pdf. This is different from Neurosynth in that it generates meta-analysis maps using predictive modeling from the string of text provided at the prompt, instead of performing inferential statistics to calculate the overlap of activation from different studies. This allows the user to generate predictive maps for more nuanced cognitive processes - especially for clinical populations which may be underrepresented in the literature compared to controls - and can be useful in generating predictions about where the activity will be for one's own study, and for creating ROIs.

SeminarNeuroscience

Algonauts 2023 winning paper journal club (fMRI encoding models)

Huzheng Yang, Paul Scotti
Aug 17, 2023

Algonauts 2023 was a challenge to create the best model that predicts fMRI brain activity given a seen image. Huze team dominated the competition and released a preprint detailing their process. This journal club meeting will involve open discussion of the paper with Q/A with Huze. Paper: https://arxiv.org/pdf/2308.01175.pdf Related paper also from Huze that we can discuss: https://arxiv.org/pdf/2307.14021.pdf

SeminarNeuroscience

In vivo direct imaging of neuronal activity at high temporospatial resolution

Jang-Yeon Park
Sungkyunkwan University, Suwon, Korea
Jun 27, 2023

Advanced noninvasive neuroimaging methods provide valuable information on the brain function, but they have obvious pros and cons in terms of temporal and spatial resolution. Functional magnetic resonance imaging (fMRI) using blood-oxygenation-level-dependent (BOLD) effect provides good spatial resolution in the order of millimeters, but has a poor temporal resolution in the order of seconds due to slow hemodynamic responses to neuronal activation, providing indirect information on neuronal activity. In contrast, electroencephalography (EEG) and magnetoencephalography (MEG) provide excellent temporal resolution in the millisecond range, but spatial information is limited to centimeter scales. Therefore, there has been a longstanding demand for noninvasive brain imaging methods capable of detecting neuronal activity at both high temporal and spatial resolution. In this talk, I will introduce a novel approach that enables Direct Imaging of Neuronal Activity (DIANA) using MRI that can dynamically image neuronal spiking activity in milliseconds precision, achieved by data acquisition scheme of rapid 2D line scan synchronized with periodically applied functional stimuli. DIANA was demonstrated through in vivo mouse brain imaging on a 9.4T animal scanner during electrical whisker-pad stimulation. DIANA with milliseconds temporal resolution had high correlations with neuronal spike activities, which could also be applied in capturing the sequential propagation of neuronal activity along the thalamocortical pathway of brain networks. In terms of the contrast mechanism, DIANA was almost unaffected by hemodynamic responses, but was subject to changes in membrane potential-associated tissue relaxation times such as T2 relaxation time. DIANA is expected to break new ground in brain science by providing an in-depth understanding of the hierarchical functional organization of the brain, including the spatiotemporal dynamics of neural networks.

SeminarNeuroscience

Movement planning as a window into hierarchical motor control

Katja Kornysheva
Centre for Human Brain (CHBH) at the University of Birmingham, UK
Jun 14, 2023

The ability to organise one's body for action without having to think about it is taken for granted, whether it is handwriting, typing on a smartphone or computer keyboard, tying a shoelace or playing the piano. When compromised, e.g. in stroke, neurodegenerative and developmental disorders, the individuals’ study, work and day-to-day living are impacted with high societal costs. Until recently, indirect methods such as invasive recordings in animal models, computer simulations, and behavioural markers during sequence execution have been used to study covert motor sequence planning in humans. In this talk, I will demonstrate how multivariate pattern analyses of non-invasive neurophysiological recordings (MEG/EEG), fMRI, and muscular recordings, combined with a new behavioural paradigm, can help us investigate the structure and dynamics of motor sequence control before and after movement execution. Across paradigms, participants learned to retrieve and produce sequences of finger presses from long-term memory. Our findings suggest that sequence planning involves parallel pre-ordering of serial elements of the upcoming sequence, rather than a preparation of a serial trajectory of activation states. Additionally, we observed that the human neocortex automatically reorganizes the order and timing of well-trained movement sequences retrieved from memory into lower and higher-level representations on a trial-by-trial basis. This echoes behavioural transfer across task contexts and flexibility in the final hundreds of milliseconds before movement execution. These findings strongly support a hierarchical and dynamic model of skilled sequence control across the peri-movement phase, which may have implications for clinical interventions.

SeminarNeuroscienceRecording

Internal representation of musical rhythm: transformation from sound to periodic beat

Tomas Lenc
Institute of Neuroscience, UCLouvain, Belgium
May 30, 2023

When listening to music, humans readily perceive and move along with a periodic beat. Critically, perception of a periodic beat is commonly elicited by rhythmic stimuli with physical features arranged in a way that is not strictly periodic. Hence, beat perception must capitalize on mechanisms that transform stimulus features into a temporally recurrent format with emphasized beat periodicity. Here, I will present a line of work that aims to clarify the nature and neural basis of this transformation. In these studies, electrophysiological activity was recorded as participants listened to rhythms known to induce perception of a consistent beat across healthy Western adults. The results show that the human brain selectively emphasizes beat representation when it is not acoustically prominent in the stimulus, and this transformation (i) can be captured non-invasively using surface EEG in adult participants, (ii) is already in place in 5- to 6-month-old infants, and (iii) cannot be fully explained by subcortical auditory nonlinearities. Moreover, as revealed by human intracerebral recordings, a prominent beat representation emerges already in the primary auditory cortex. Finally, electrophysiological recordings from the auditory cortex of a rhesus monkey show a significant enhancement of beat periodicities in this area, similar to humans. Taken together, these findings indicate an early, general auditory cortical stage of processing by which rhythmic inputs are rendered more temporally recurrent than they are in reality. Already present in non-human primates and human infants, this "periodized" default format could then be shaped by higher-level associative sensory-motor areas and guide movement in individuals with strongly coupled auditory and motor systems. Together, this highlights the multiplicity of neural processes supporting coordinated musical behaviors widely observed across human cultures.The experiments herein include: a motor timing task comparing the effects of movement vs non-movement with and without feedback (Exp. 1A & 1B), a transcranial magnetic stimulation (TMS) study on the role of the supplementary motor area (SMA) in transforming temporal information (Exp. 2), and a perceptual timing task investigating the effect of noisy movement on time perception with both visual and auditory modalities (Exp. 3A & 3B). Together, the results of these studies support the Bayesian cue combination framework, in that: movement improves the precision of time perception not only in perceptual timing tasks but also motor timing tasks (Exp. 1A & 1B), stimulating the SMA appears to disrupt the transformation of temporal information (Exp. 2), and when movement becomes unreliable or noisy there is no longer an improvement in precision of time perception (Exp. 3A & 3B). Although there is support for the proposed framework, more studies (i.e., fMRI, TMS, EEG, etc.) need to be conducted in order to better understand where and how this may be instantiated in the brain; however, this work provides a starting point to better understanding the intrinsic connection between time and movement

SeminarNeuroscienceRecording

The Effects of Movement Parameters on Time Perception

Keri Anne Gladhill
Florida State University, Tallahassee, Florida.
May 30, 2023

Mobile organisms must be capable of deciding both where and when to move in order to keep up with a changing environment; therefore, a strong sense of time is necessary, otherwise, we would fail in many of our movement goals. Despite this intrinsic link between movement and timing, only recently has research begun to investigate the interaction. Two primary effects that have been observed include: movements biasing time estimates (i.e., affecting accuracy) as well as making time estimates more precise. The goal of this presentation is to review this literature, discuss a Bayesian cue combination framework to explain these effects, and discuss the experiments I have conducted to test the framework. The experiments herein include: a motor timing task comparing the effects of movement vs non-movement with and without feedback (Exp. 1A & 1B), a transcranial magnetic stimulation (TMS) study on the role of the supplementary motor area (SMA) in transforming temporal information (Exp. 2), and a perceptual timing task investigating the effect of noisy movement on time perception with both visual and auditory modalities (Exp. 3A & 3B). Together, the results of these studies support the Bayesian cue combination framework, in that: movement improves the precision of time perception not only in perceptual timing tasks but also motor timing tasks (Exp. 1A & 1B), stimulating the SMA appears to disrupt the transformation of temporal information (Exp. 2), and when movement becomes unreliable or noisy there is no longer an improvement in precision of time perception (Exp. 3A & 3B). Although there is support for the proposed framework, more studies (i.e., fMRI, TMS, EEG, etc.) need to be conducted in order to better understand where and how this may be instantiated in the brain; however, this work provides a starting point to better understanding the intrinsic connection between time and movement

SeminarNeuroscienceRecording

Why is 7T MRI indispensable in epilepsy now?

Maxime Guye
CRMBM Aix Marseille University
Apr 25, 2023

Identifying a structural brain lesion on MRI is the most important factor that correlates with seizure freedom after surgery in patients suffering from drug-resistant focal epilepsy. By providing better image contrast and higher spatial resolution, structural MRI at 7 Tesla (7T) can lead to lesion detection in about 25% of patients presenting with negative MRI at lower fields. In addition to a better detection/delineation/phenotyping of epileptogenic lesions, higher signal at ultra-high field also facilitates more detailed analyses of several functional and molecular alterations of tissues, susceptible to detect epileptogenic properties even in absence of visible lesions. These advantages but also the technical challenges of 7T MRI in practice will be presented and discussed.

SeminarNeuroscience

Dynamic endocrine modulation of the nervous system

Emily Jabocs
US Santa Barbara Neuroscience
Apr 17, 2023

Sex hormones are powerful neuromodulators of learning and memory. In rodents and nonhuman primates estrogen and progesterone influence the central nervous system across a range of spatiotemporal scales. Yet, their influence on the structural and functional architecture of the human brain is largely unknown. Here, I highlight findings from a series of dense-sampling neuroimaging studies from my laboratory designed to probe the dynamic interplay between the nervous and endocrine systems. Individuals underwent brain imaging and venipuncture every 12-24 hours for 30 consecutive days. These procedures were carried out under freely cycling conditions and again under a pharmacological regimen that chronically suppresses sex hormone production. First, resting state fMRI evidence suggests that transient increases in estrogen drive robust increases in functional connectivity across the brain. Time-lagged methods from dynamical systems analysis further reveals that these transient changes in estrogen enhance within-network integration (i.e. global efficiency) in several large-scale brain networks, particularly Default Mode and Dorsal Attention Networks. Next, using high-resolution hippocampal subfield imaging, we found that intrinsic hormone fluctuations and exogenous hormone manipulations can rapidly and dynamically shape medial temporal lobe morphology. Together, these findings suggest that neuroendocrine factors influence the brain over short and protracted timescales.

SeminarNeuroscienceRecording

Multisensory processing of anticipatory and consummatory food cues

Janina Seubert
Karolinska Institute
Feb 1, 2023
SeminarNeuroscienceRecording

Visual Perception in Cerebral Visual Impairment (CVI)

Lotfi Merabet
Mass Eye and Ear, Harvard Medical School
Jan 18, 2023
SeminarNeuroscienceRecording

A vision of numerical cognition

Serge Dumoulin
Netherlands Institute for Neuroscience
Dec 14, 2022
SeminarNeuroscience

Modeling shared and variable information encoded in fine-scale cortical topographies

James Haxby
Dartmouth College
Dec 12, 2022

Information is encoded in fine-scale functional topographies that vary from brain to brain. Hyperalignment models information that is shared across brain in a high-dimensional common information space. Hyperalignment transformations project idiosyncratic individual topographies into the common model information space. These transformations contain topographic basis functions, affording estimates of how shared information in the common model space is instantiated in the idiosyncratic functional topographies of individual brains. This new model of the functional organization of cortex – as multiplexed, overlapping basis functions – captures the idiosyncratic conformations of both coarse-scale topographies, such as retinotopy and category-selectivity, and fine-scale topographies. Hyperalignment also makes it possible to investigate how information that is encoded in fine-scale topographies differs across brains. These individual differences in fine-grained cortical function were not accessible with previous methods.

SeminarNeuroscience

Toward an open science ecosystem for neuroimaging

Russ Poldrack
Stanford
Dec 7, 2022

It is now widely accepted that openness and transparency are keys to improving the reproducibility of scientific research, but many challenges remain to adoption of these practices. I will discuss the growth of an ecosystem for open science within the field of neuroimaging, focusing on platforms for open data sharing and open source tools for reproducible data analysis. I will also discuss the role of the Brain Imaging Data Structure (BIDS), a community standard for data organization, in enabling this open science ecosystem, and will outline the scientific impacts of these resources.

SeminarNeuroscience

Preclinical fMRI: Why should we care and what it's useful for

Valerio Zerbi
EPFL, School of Engineering (STI), Neuro-X Institute, Lausanne & CIBM Centre for Biomedical Imaging, Lausanne, Switzerland
Dec 7, 2022
SeminarNeuroscienceRecording

Trial by trial predictions of subjective time from human brain activity

Maxine Sherman
University of Sussex, UK
Oct 25, 2022

Our perception of time isn’t like a clock; it varies depending on other aspects of experience, such as what we see and hear in that moment. However, in everyday life, the properties of these simple features can change frequently, presenting a challenge to understanding real-world time perception based on simple lab experiments. We developed a computational model of human time perception based on tracking changes in neural activity across brain regions involved in sensory processing, using fMRI. By measuring changes in brain activity patterns across these regions, our approach accommodates the different and changing feature combinations present in natural scenarios, such as walking on a busy street. Our model reproduces people’s duration reports for natural videos (up to almost half a minute long) and, most importantly, predicts whether a person reports a scene as relatively shorter or longer–the biases in time perception that reflect how natural experience of time deviates from clock time

SeminarNeuroscienceRecording

Hierarchical transformation of visual event timing representations in the human brain: response dynamics in early visual cortex and timing-tuned responses in association cortices

Evi Hendrikx
Utrecht University
Sep 27, 2022

Quantifying the timing (duration and frequency) of brief visual events is vital to human perception, multisensory integration and action planning. For example, this allows us to follow and interact with the precise timing of speech and sports. Here we investigate how visual event timing is represented and transformed across the brain’s hierarchy: from sensory processing areas, through multisensory integration areas, to frontal action planning areas. We hypothesized that the dynamics of neural responses to sensory events in sensory processing areas allows derivation of event timing representations. This would allow higher-level processes such as multisensory integration and action planning to use sensory timing information, without the need for specialized central pacemakers or processes. Using 7T fMRI and neural model-based analyses, we found responses that monotonically increase in amplitude with visual event duration and frequency, becoming increasingly clear from primary visual cortex to lateral occipital visual field maps. Beginning in area MT/V5, we found a gradual transition from monotonic to tuned responses, with response amplitudes peaking at different event timings in different recording sites. While monotonic response components were limited to the retinotopic location of the visual stimulus, timing-tuned response components were independent of the recording sites' preferred visual field positions. These tuned responses formed a network of topographically organized timing maps in superior parietal, postcentral and frontal areas. From anterior to posterior timing maps, multiple events were increasingly integrated, response selectivity narrowed, and responses focused increasingly on the middle of the presented timing range. These results suggest that responses to event timing are transformed from the human brain’s sensory areas to the association cortices, with the event’s temporal properties being increasingly abstracted from the response dynamics and locations of early sensory processing. The resulting abstracted representation of event timing is then propagated through areas implicated in multisensory integration and action planning.

SeminarNeuroscienceRecording

A parsimonious description of global functional brain organization in three spatiotemporal patterns

Taylor Bolt
Emory University
Sep 21, 2022

Resting-state functional magnetic resonance imaging (MRI) has yielded seemingly disparate insights into large-scale organization of the human brain. The brain’s large-scale organization can be divided into two broad categories: zero-lag representations of functional connectivity structure and time-lag representations of traveling wave or propagation structure. In this study, we sought to unify observed phenomena across these two categories in the form of three low-frequency spatiotemporal patterns composed of a mixture of standing and traveling wave dynamics. We showed that a range of empirical phenomena, including functional connectivity gradients, the task-positive/task-negative anti-correlation pattern, the global signal, time-lag propagation patterns, the quasiperiodic pattern and the functional connectome network structure, are manifestations of these three spatiotemporal patterns. These patterns account for much of the global spatial structure that underlies functional connectivity analyses and unifies phenomena in resting-state functional MRI previously thought distinct.

SeminarNeuroscience

Multi-level theory of neural representations in the era of large-scale neural recordings: Task-efficiency, representation geometry, and single neuron properties

SueYeon Chung
NYU/Flatiron
Sep 15, 2022

A central goal in neuroscience is to understand how orchestrated computations in the brain arise from the properties of single neurons and networks of such neurons. Answering this question requires theoretical advances that shine light into the ‘black box’ of representations in neural circuits. In this talk, we will demonstrate theoretical approaches that help describe how cognitive and behavioral task implementations emerge from the structure in neural populations and from biologically plausible neural networks. First, we will introduce an analytic theory that connects geometric structures that arise from neural responses (i.e., neural manifolds) to the neural population’s efficiency in implementing a task. In particular, this theory describes a perceptron’s capacity for linearly classifying object categories based on the underlying neural manifolds’ structural properties. Next, we will describe how such methods can, in fact, open the ‘black box’ of distributed neuronal circuits in a range of experimental neural datasets. In particular, our method overcomes the limitations of traditional dimensionality reduction techniques, as it operates directly on the high-dimensional representations, rather than relying on low-dimensionality assumptions for visualization. Furthermore, this method allows for simultaneous multi-level analysis, by measuring geometric properties in neural population data, and estimating the amount of task information embedded in the same population. These geometric frameworks are general and can be used across different brain areas and task modalities, as demonstrated in the work of ours and others, ranging from the visual cortex to parietal cortex to hippocampus, and from calcium imaging to electrophysiology to fMRI datasets. Finally, we will discuss our recent efforts to fully extend this multi-level description of neural populations, by (1) investigating how single neuron properties shape the representation geometry in early sensory areas, and by (2) understanding how task-efficient neural manifolds emerge in biologically-constrained neural networks. By extending our mathematical toolkit for analyzing representations underlying complex neuronal networks, we hope to contribute to the long-term challenge of understanding the neuronal basis of tasks and behaviors.

SeminarNeuroscience

Chemistry of the adaptive mind: lessons from dopamine

Roshan Cools, PhD
Donders Institute for Brain, Cognition and Behaviour, Radboudumc, Department of ...
Jun 13, 2022

The human brain faces a variety of computational dilemmas, including the flexibility/stability, the speed/accuracy and the labor/leisure tradeoff. I will argue that striatal dopamine is particularly well suited to dynamically regulate these computational tradeoffs depending on constantly changing task demands. This working hypothesis is grounded in evidence from recent studies on learning, motivation and cognitive control in human volunteers, using chemical PET, psychopharmacology, and/or fMRI. These studies also begin to elucidate the mechanisms underlying the huge variability in catecholaminergic drug effects across different individuals and across different task contexts. For example, I will demonstrate how effects of the most commonly used psychostimulant methylphenidate on learning, Pavlovian and effortful instrumental control depend on fluctuations in current environmental volatility, on individual differences in working memory capacity and on opportunity cost respectively.

SeminarNeuroscienceRecording

The neural basis of flexible semantic cognition (BACN Mid-career Prize Lecture 2022)

Elizabeth Jefferies
Department of Psychology, University of York, UK
May 24, 2022

Semantic cognition brings meaning to our world – it allows us to make sense of what we see and hear, and to produce adaptive thoughts and behaviour. Since we have a wealth of information about any given concept, our store of knowledge is not sufficient for successful semantic cognition; we also need mechanisms that can steer the information that we retrieve so it suits the context or our current goals. This talk traces the neural networks that underpin this flexibility in semantic cognition. It draws on evidence from multiple methods (neuropsychology, neuroimaging, neural stimulation) to show that two interacting heteromodal networks underpin different aspects of flexibility. Regions including anterior temporal cortex and left angular gyrus respond more strongly when semantic retrieval follows highly-related concepts or multiple convergent cues; the multivariate responses in these regions correspond to context-dependent aspects of meaning. A second network centred on left inferior frontal gyrus and left posterior middle temporal gyrus is associated with controlled semantic retrieval, responding more strongly when weak associations are required or there is more competition between concepts. This semantic control network is linked to creativity and also captures context-dependent aspects of meaning; however, this network specifically shows more similar multivariate responses across trials when association strength is weak, reflecting a common controlled retrieval state when more unusual associations are the focus. Evidence from neuropsychology, fMRI and TMS suggests that this semantic control network is distinct from multiple-demand cortex which supports executive control across domains, although challenging semantic tasks recruit both networks. The semantic control network is juxtaposed between regions of default mode network that might be sufficient for the retrieval of strong semantic relationships and multiple-demand regions in the left hemisphere, suggesting that the large-scale organisation of flexible semantic cognition can be understood in terms of cortical gradients that capture systematic functional transitions that are repeated in temporal, parietal and frontal cortex.

SeminarNeuroscienceRecording

Can I be bothered? Neural and computational mechanisms underlying the dynamics of effort processing (BACN Early-career Prize Lecture 2021)

Matthew Apps
Centre for Human Brain Health, School of Psychology, University of Birmingham
May 23, 2022

From a workout at the gym to helping a colleague with their work, everyday we make decisions about whether we are willing to exert effort to obtain some sort of benefit. Increases in how effortful actions and cognitive processes are perceived to be has been linked to clinically severe impairments to motivation, such as apathy and fatigue, across many neurological and psychiatric conditions. However, the vast majority of neuroscience research has focused on understanding the benefits for acting, the rewards, and not on the effort required. As a result, the computational and neural mechanisms underlying how effort is processed are poorly understood. How do we compute how effortful we perceive a task to be? How does this feed into our motivation and decisions of whether to act? How are such computations implemented in the brain? and how do they change in different environments? I will present a series of studies examining these questions using novel behavioural tasks, computational modelling, fMRI, pharmacological manipulations, and testing in a range of different populations. These studies highlight how the brain represents the costs of exerting effort, and the dynamic processes underlying how our sensitivity to effort changes as a function of our goals, traits, and socio-cognitive processes. This work provides new computational frameworks for understanding and examining impaired motivation across psychiatric and neurological conditions, as well as why all of us, sometimes, can’t be bothered.

SeminarNeuroscience

The functional connectome across temporal scales

Sepideh Sadaghiani
Assistant Professor, University of Illinois, USA
Mar 29, 2022

The view of human brain function has drastically shifted over the last decade, owing to the observation that the majority of brain activity is intrinsic rather than driven by external stimuli or cognitive demands. Specifically, all brain regions continuously communicate in spatiotemporally organized patterns that constitute the functional connectome, with consequences for cognition and behavior. In this talk, I will argue that another shift is underway, driven by new insights from synergistic interrogation of the functional connectome using different acquisition methods. The human functional connectome is typically investigated with functional magnetic resonance imaging (fMRI) that relies on the indirect hemodynamic signal, thereby emphasizing very slow connectivity across brain regions. Conversely, more recent methodological advances demonstrate that fast connectivity within the whole-brain connectome can be studied with real-time methods such as electroencephalography (EEG). Our findings show that combining fMRI with scalp or intracranial EEG in humans, especially when recorded concurrently, paints a rich picture of neural communication across the connectome. Specifically, the connectome comprises both fast, oscillation-based connectivity observable with EEG, as well as extremely slow processes best captured by fMRI. While the fast and slow processes share an important degree of spatial organization, these processes unfold in a temporally independent manner. Our observations suggest that fMRI and EEG may be envisaged as capturing distinct aspects of functional connectivity, rather than intermodal measurements of the same phenomenon. Infraslow fluctuation-based and rapid oscillation-based connectivity of various frequency bands constitute multiple dynamic trajectories through a shared state space of discrete connectome configurations. The multitude of flexible trajectories may concurrently enable functional connectivity across multiple independent sets of distributed brain regions.

SeminarNeuroscience

Multi-modal biomarkers improve prediction of memory function in cognitively unimpaired older adults

Alexandra N. Trelle
Stanford
Mar 21, 2022

Identifying biomarkers that predict current and future cognition may improve estimates of Alzheimer’s disease risk among cognitively unimpaired older adults (CU). In vivo measures of amyloid and tau protein burden and task-based functional MRI measures of core memory mechanisms, such as the strength of cortical reinstatement during remembering, have each been linked to individual differences in memory in CU. This study assesses whether combining CSF biomarkers with fMRI indices of cortical reinstatement improves estimation of memory function in CU, assayed using three unique tests of hippocampal-dependent memory. Participants were 158 CU (90F, aged 60-88 years, CDR=0) enrolled in the Stanford Aging and Memory Study (SAMS). Cortical reinstatement was quantified using multivoxel pattern analysis of fMRI data collected during completion of a paired associate cued recall task. Memory was assayed by associative cued recall, a delayed recall composite, and a mnemonic discrimination task that involved discrimination between studied ‘target’ objects, novel ‘foil’ objects, and perceptually similar ‘lure’ objects. CSF Aβ42, Aβ40, and p-tau181 were measured with the automated Lumipulse G system (N=115). Regression analyses examined cross-sectional relationships between memory performance in each task and a) the strength of cortical reinstatement in the Default Network (comprised of posterior medial, medial frontal, and lateral parietal regions) during associative cued recall and b) CSF Aβ42/Aβ40 and p-tau181, controlling for age, sex, and education. For mnemonic discrimination, linear mixed effects models were used to examine the relationship between discrimination (d’) and each predictor as a function of target-lure similarity. Stronger cortical reinstatement was associated with better performance across all three memory assays. Age and higher CSF p-tau181 were each associated with poorer associative memory and a diminished improvement in mnemonic discrimination as target-lure similarity decreased. When combined in a single model, CSF p-tau181 and Default Network reinstatement strength, but not age, explained unique variance in associative memory and mnemonic discrimination performance, outperforming the single-modality models. Combining fMRI measures of core memory functions with protein biomarkers of Alzheimer’s disease significantly improved prediction of individual differences in memory performance in CU. Leveraging multimodal biomarkers may enhance future prediction of risk for cognitive decline.

SeminarNeuroscienceRecording

Brain dynamics and flexible behaviors

Lucina Uddin
Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles
Mar 15, 2022

Executive control processes and flexible behaviors rely on the integrity of, and dynamic interactions between, large-scale functional brain networks. The right insular cortex is a critical component of a salience/midcingulo-insular network that is thought to mediate interactions between brain networks involved in externally oriented (central executive/lateral frontoparietal network) and internally oriented (default mode/medial frontoparietal network) processes. How these brain systems reconfigure with development is a critical question for cognitive neuroscience, with implications for neurodevelopmental pathologies affecting brain connectivity. I will describe studies examining how brain network dynamics support flexible behaviors in typical and atypical development, presenting evidence suggesting a unique role for the dorsal anterior insular from studies of meta-analytic connectivity modeling, dynamic functional connectivity, and structural connectivity. These findings from adults, typically developing children, and children with autism suggest that structural and functional maturation of insular pathways is a critical component of the process by which human brain networks mature to support complex, flexible cognitive processes throughout the lifespan.

SeminarNeuroscience

fMRI of cognitive reappraisal, acceptance, and suppression emotion regulation strategies in basic and clinically applied contexts

Philippe Goldin
University of California, Davis, USA
Mar 15, 2022

The ability to effectively regulate emotions is a fundamental skill related to physical and psychological health. In this talk, I will present behavioral and fMRI data from several different studies that examined cognitive reappraisal, acceptance, and suppression emotion regulation strategies in healthy controls participants and in the context of randomized trials of cognitive behavioral therapy, mindfulness- based stress reduction, and aerobic exercise as interventions for adults with anxiety disorders. We will also examine the implementation of different types of functional connectivity analytic approaches to probe intervention-related brain mechanism changes.

SeminarNeuroscienceRecording

Cross-modality imaging of the neural systems that support executive functions

Yaara Erez
Affiliate MRC Cognition and Brain Sciences Unit, University of Cambridge
Feb 28, 2022

Executive functions refer to a collection of mental processes such as attention, planning and problem solving, supported by a frontoparietal distributed brain network. These functions are essential for everyday life. Specifically in the context of patients with brain tumours there is a need to preserve them in order to enable good quality of life for patients. During surgeries for the removal of a brain tumour, the aim is to remove as much as possible of the tumour and at the same time prevent damage to the areas around it to preserve function and enable good quality of life for patients. In many cases, functional mapping is conducted during an awake surgery in order to identify areas critical for certain functions and avoid their surgical resection. While mapping is routinely done for functions such as movement and language, mapping executive functions is more challenging. Despite growing recognition in the importance of these functions for patient well-being in recent years, only a handful of studies addressed their intraoperative mapping. In the talk, I will present our new approach for mapping executive function areas using electrocorticography during awake brain surgery. These results will be complemented by neuroimaging data from healthy volunteers, directed at reliably localizing executive function regions in individuals using fMRI. I will also discuss more broadly challenges ofß using neuroimaging for neurosurgical applications. We aim to advance cross-modality neuroimaging of cognitive function which is pivotal to patient-tailored surgical interventions, and will ultimately lead to improved clinical outcomes.

SeminarNeuroscience

Towards an inclusive neurobiology of language

Esti Blanco Elorrieta
Department of Psychology, Harvard University, Cambridge, USA
Jan 27, 2022

Understanding how our brains process language is one of the fundamental issues in cognitive science. In order to reach such understanding, it is critical to cover the full spectrum of manners in which humans acquire and experience language. However, due to a myriad of socioeconomic factors, research has disproportionately focused on monolingual English speakers. In this talk, I present a series of studies that systematically target fundamental questions about bilingual language use across a range of conversational contexts, both in production and comprehension. The results lay the groundwork to propose a more inclusive theory of the neurobiology of language, with an architecture that assumes a common selection principle at each linguistic level and can account for attested features of both bilingual and monolingual speech in, but crucially also out of, experimental settings.

SeminarNeuroscience

A Network for Computing Value Equilibrium in the Human Medial Prefrontal Corte

Anush Ghambaryan
HSE University
Dec 22, 2021

Humans and other animals make decisions in order to satisfy their goals. However, it remains unknown how neural circuits compute which of multiple possible goals should be pursued (e.g., when balancing hunger and thirst) and how to combine these signals with estimates of available reward alternatives. Here, humans undergoing fMRI accumulated two distinct assets over a sequence of trials. Financial outcomes depended on the minimum cumulate of either asset, creating a need to maintain “value equilibrium” by redressing any imbalance among the assets. Blood-oxygen-level-dependent (BOLD) signals in the rostral anterior cingulate cortex (rACC) tracked the level of imbalance among goals, whereas the ventromedial prefrontal cortex (vmPFC) signaled the level of redress incurred by a choice rather than the overall amount received. These results suggest that a network of medial frontal brain regions compute a value signal that maintains value equilibrium among internal goals.

SeminarNeuroscienceRecording

Decoding sounds in early visual cortex of sighted and blind individuals

Petra Vetter
University of Fribourg, Switzerland
Dec 8, 2021
ePoster

Signatures of fractal temporal dependencies are correlated between MEG and fMRI

Tim Schäfer, Alireza Gharabaghi, Anna Levina

Bernstein Conference 2024

ePoster

Individualized representation learning of resting-state fMRI

Kuan Han, Minkyu Choi, Xiaokai Wang, Zhongming Liu

COSYNE 2023

ePoster

Evidence for compositionality in fMRI visual representations

Matteo Ferrante, Tommaso Boccato, Nicola Toschi, Rufin VanRullen

COSYNE 2025

ePoster

fMRI study reveals enhanced top-down and bottom-up processes in schizophrenia

Shuhei Hara, Keita Suzuki, Akio Murakami, Kei Majima, Mohamed Adbelhack, Fan Cheng, Hidehiko Takahashi, Kenji Doya

COSYNE 2025

ePoster

Changes in the amplitude of the task-evoked hemodynamic response during grip movements; simultaneous fNIRS and fMRI measurements

Satoshi Yamamoto, Hiroshi Kawaguchi, Daisuke Ishii, Yutaka Kohno

FENS Forum 2024

ePoster

Cognitive map formation and virtual navigation in blind subjects: An fMRI study

Maxime Bleau, Quentin Dessain, Daniel R. Chebat, Laurence Dricot, Ron Kupers, Maurice Ptito

FENS Forum 2024

ePoster

A connectome-based fMRI study of spatial reasoning in stroke

Takamichi Tohyama, Masaki Fukunaga, Yohei Otaka

FENS Forum 2024

ePoster

Coupling between global grey matter and fourth ventricle fMRI signals links with brain clearance in humans

Viktor Neumaier, Moritz Bonhoeffer, Melissa Thalhammer, Julia Schulz, Christine Preibisch, Sibylle Ziegler, Matthias Brendel, Igor Yakushev, Josef Priller, Christian Wachinger, Fabian Bongratz, Markus Karmann, Dennis Hedderich, Felix Brandl, Benedikt Zott, Christian Sorg

FENS Forum 2024

ePoster

Decoding of fMRI resting-state using task-based MVPA supports the Incentive-Sensitization Theory in smokers

Cindy Lor, David Steyrl, Mengfan Zhang, Feng Zhou, Benjamin Becker, Marcus Herdener, Boris B. Quednow, Amelie Haugg, Frank Scharnowski

FENS Forum 2024

ePoster

Effects of performance and additional punishment on auditory-evoked brain activation patterns in discrimination learning – An auditory fMRI study in the Mongolian gerbil

Annika Michalek, Patricia Wenk, Nicole Angenstein, Eike Budinger

FENS Forum 2024

ePoster

fMRI mapping of brain circuits during simple sound perception by awake rats

Gabriele Russo, Denise Manahan-Vaughan

FENS Forum 2024

ePoster

GPT-4 can recognize Theory of Mind in natural conversations: fMRI evidence

Camilla Di Pasquasio, Marc Cavazza, Thierry Chaminade

FENS Forum 2024

ePoster

High-resolution fMRI reveals an extensive cortical network responding to conspecific emotional vocalisations in macaques

Mathilda Froesel, Qi Zhu, Haiyan Wang, Marc Hauser, Suliann Ben Hamed, Wim Vanduffel

FENS Forum 2024

ePoster

The inside-out of emotion processing: Evaluating children and adults’ neural correlates from a novel fMRI movie-watching paradigm

Sofia Scatolin, Elena Federici, Plamina Dimanova, Réka Borbás, Mirjam Habegger, Nora Maria Raschle

FENS Forum 2024

ePoster

Investigating strategies to account gender differences in mental rotation tasks - An fMRI study

Nadia Bersier, Sandra Arbula, Raffaella Rumiati, Silvio Ionta, Gustavo Pamplona

FENS Forum 2024

ePoster

M1-PMd connectivity modulation via fMRI-neurofeedback

FENS Forum 2024

ePoster

Mapping social cognition in patients with gliomas: Preoperative and intraoperative insights from fMRI, MEG, and direct electrical stimulation

Lucia Amoruso, Ileana Quiñones, Santiago Gil-Robles, Garazi Bermudez, Iñigo Pomposo, Manuel Carreiras

FENS Forum 2024

ePoster

Narrowband fMRI BOLD signal entropy predicts neonatal age

Ilkka Suuronen, Elmo P. Pulli, Harri Merisaari, Hasse Karlsson, Linnea Karlsson, Jetro J. Tuulari

FENS Forum 2024

ePoster

Neural dynamics of mood-influenced driving using fMRI: Connectivity patterns and speed variations

Sama Rahnemayan, Homayoun Sadeghi-bazargani, Morteza Ghojazadeh, Michael Nitsche

FENS Forum 2024

ePoster

Neurovascular coupling along the optic nerve: Insights from two-photon imaging, functional ultrasound, and high-resolution BOLD fMRI

Esteban Suárez Baquero, Serge Charpak

FENS Forum 2024

ePoster

Observation of social and non-social interactions in dogs and humans: Results from fMRI and eyetracking

Catherine-Noémie Alexandrina Guran

FENS Forum 2024

ePoster

Oculomotor vergence system through fMRI in persons with binocularly normal vision and persistent post-concussive symptoms with convergence insufficiency

Ayushi Sangoi, Farzin Hajebrahimi, Suril Gohel, Mitchell Scheiman, Arlene Goodman, Melissa Noble, Tara Alvarez

FENS Forum 2024

ePoster

OptoSens-fMRI of the nigrostriatal pathway

Christina Grimm, Francesca Barcellini, Valerio Zerbi

FENS Forum 2024

ePoster

Regional cortical excitability critically biases interareal fMRI connectivity

David Sastre, Federico Rocchi, Simone Blanco Malerba, Alexia Stuefer, Jean Charles Mariani, Filomena Gracia Alvino, Shahryar Noei, Ludovico Coletta, Alberto Galbusera, Stefano Panzeri, Alessandro Gozzi

FENS Forum 2024

ePoster

Reliability of reduced inter-subject functional connectivity during naturalistic movie-watching fMRI in autism — comparison of German and Finnish samples

Feng Lin, Laura Albantakis, Severi Santavirta, Marie-Luise Brandi, Lauri Nummenmaa, Jürgen Dukart, Leonhard Schilbach, Juha M. Lahnakoski

FENS Forum 2024

ePoster

The role of affect sharing in observational fear learning: Comparing skin conductance, pupil size, and fMRI data

Alexa Müllner-Huber, Timo Krug, Andreas Olsson, Claus Lamm

FENS Forum 2024

ePoster

Semi-blind machine learning for fMRI-based predictions of intelligence

Gabriele Lohmann, Samuel Heczko, Lucas Mahler, Qi Wang, Vinod J. Kumar, Michelle Roost, Juergen Jost, Klaus Scheffler

FENS Forum 2024

ePoster

Spatiotemporal dissociation of reward components in the midbrain: An EEG-fMRI 7T study

Joana Carvalheiro, Marios Philiastides

FENS Forum 2024

ePoster

Incepting meaning to meaningless symbols without participants awareness by using real-time fMRI decoded neurofeedback

Pedro Margolles García

Neuromatch 5

ePoster

Predicting Math and Story-Related Auditory Tasks Completed in fMRI using a Logistic Regression Machine Learning Model

Mary Bassey

Neuromatch 5