On a fast timescale, neurons mostly interact by short, stereotypical electrical impulses or spikes. Why? A common answer is that spikes are useful for long-distance communication, to avoid alterations while traveling along axons. But as it turns out, spikes are seen in many places outside neurons: in the heart, in muscles, in plants and even in protists. From these examples, it appears that action potentials mediate some form of coordinated action, a timed event. From this perspective, spikes should not be seen simply as noisy implementations of underlying continuous signals (a sort of analog-
Density-based Neural Decoding using Spike Localization for Neuropixels Recordings
Yizi Zhang, Tianxiao He, Julien Boussard, Cole Hurwitz, Erdem Varol, Charlie Windolf, Olivier Winter, Matt Whiteway, The International Brain Lab The International Brain Lab, Liam Paninski · COSYNE 2023
Sun, Mar 12, 2023
Neural decoding is essential for understanding the association between neural activity and behavior. A prerequisite for most decoding methods is spike sorting, the assignment of action potentials (or spikes) to individual neurons. Current spike sorting algorithms, however, can be inaccurate and do not properly model uncertainty of spike assignments, therefore discarding information that could potentially improve decoding performance. Recent advances in high-channel-count probes like Neuropixels (NP) and extracellular analysis pipelines allow for extracting a rich set of spike features to direc
Silences, Spikes and Bursts: Three-Part Knot of the Neural Code
Richard Naud · University of Ottawa
Wed, Mar 1, 2023 · 05:00 UTC
When a neuron breaks silence, it can emit action potentials in a number of patterns. Some responses are so sudden and intense that electrophysiologists felt the need to single them out, labeling action potentials emitted at a particularly high frequency with a metonym – bursts. Is there more to bursts than a figure of speech? After all, sudden bouts of high-frequency firing are expected to occur whenever inputs surge. In this talk, I will discuss the implications of seeing the neural code as having three syllables: silences, spikes and bursts. In particular, I will describe recent theoretical
Reflex Regulation of Innate Immunity
Kevin Tracey · Northwell Health
Mon, Nov 8, 2021 · 15:00 UTC
Reflex circuits in the nervous system integrate changes in the environment with physiology. Compact clusters of brain neuron cell bodies, termed nuclei, are essential for receiving sensory input and for transmitting motor outputs to the body. These nucelii are critical relay stations which process incoming information and convert these signals to outgoing action potentials which regulate immune system functions. Thus, reflex neural circuits maintain parameters of immunological physiology within a narrow range optimal for health. Advances in neuroscience and immunology using optogenetics, pharm
Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses
Willem Wybo · Morrison lab, Forschungszentrum Jülich, Germany
Thu, Jun 10, 2021 · 16:30 UTC
There is little consensus on the level of spatial complexity at which dendrites operate. On the one hand, emergent evidence indicates that synapses cluster at micrometer spatial scales. On the other hand, most modelling and network studies ignore dendrites altogether. This dichotomy raises an urgent question: what is the smallest relevant spatial scale for understanding dendritic computation? We have developed a method to construct compartmental models at any level of spatial complexity. Through carefully chosen parameter fits, solvable in the least-squares sense, we obtain accurate reduced co
Capacitance clamp - artificial capacitance in biological neurons via dynamic clamp
Paul Pfeiffer · Schreiber lab, Humboldt University Berlin, Germany
Thu, Jun 10, 2021 · 16:00 UTC
A basic time scale in neural dynamics from single cells to the network level is the membrane time constant - set by a neuron’s input resistance and its capacitance. Interestingly, the membrane capacitance appears to be more dynamic than previously assumed with implications for neural function and pathology. Indeed, altered membrane capacitance has been observed in reaction to physiological changes like neural swelling, but also in ageing and Alzheimer's disease. Importantly, according to theory, even small changes of the capacitance can affect neuronal signal processing, e.g. increase network
Workshop: Spatial Brain Dynamics
Kenneth Harris, György Buzsáki, Terrence Sejnowski
Thu, May 13, 2021 · 17:00 UTC
Traditionally, the term dynamics means changes in a system evolving over time. However, in the brain action potentials propagate along axons to induce postsynaptic currents with different delays at many sites simultaneously. This fundamental computational mechanism evolves spatially to engage the neuron populations involved in brain functions. To identify and understand the spatial processing in brains, this workshop will focus on the spatial principles of brain dynamics that determine how action potentials and membrane currents propagate in the networks of neurons that brains are made of. We
Workshop: Spatial Brain Dynamics
Carl Petersen, Bruce McNaughton, Sonja Grün
Wed, May 12, 2021 · 17:00 UTC
Traditionally, the term dynamics means changes in a system evolving over time. However, in the brain action potentials propagate along axons to induce postsynaptic currents with different delays at many sites simultaneously. This fundamental computational mechanism evolves spatially to engage the neuron populations involved in brain functions. To identify and understand the spatial processing in brains, this workshop will focus on the spatial principles of brain dynamics that determine how action potentials and membrane currents propagate in the networks of neurons that brains are made of. We
Workshop: Spatial Brain Dynamics
Jennifer Li and Drew Robson, Thomas Mrsic-Flogel, David McCormick
Tue, May 11, 2021 · 17:00 UTC
Traditionally, the term dynamics means changes in a system evolving over time. However, in the brain action potentials propagate along axons to induce postsynaptic currents with different delays at many sites simultaneously. This fundamental computational mechanism evolves spatially to engage the neuron populations involved in brain functions. To identify and understand the spatial processing in brains, this workshop will focus on the spatial principles of brain dynamics that determine how action potentials and membrane currents propagate in the networks of neurons that brains are made of. We
Why spikes? A synaptic transmission perspective
Jonas Stapmanns, Jean-Pascal Pfister · Bernstein Conference 2024
The vast majority of neurons in the vertebrate nervous systems transmits information in a digital manner via action potentials. Yet, a detailed understanding of the advantages of digital communication in the brain is still lacking. In our study, we investigate synaptic transmission in terms of an optimization problem, where the space of solutions comprises the digital and the analog regime. We analyze a binomial synapse model connecting two neurons, where the probability of transmitter release, modeled by a transfer function, depends on the axonal membrane potential. We optimize the transfer f
Timing and transmission: the role of axonal action potential propagation speed in the synchronization of foveal vision
Annalisa Bucci, Marc Büttner, Niklas Domdei, Federica Rosselli, Matej Znidaric, Roland Diggelmann, Martina De Gennaro, Cameron Cowan, Wolf Harmening, Andreas Hierlemann, Botond Roska, Felix Franke · Bernstein Conference 2024
Precise timing of action potentials is crucial for processing sensory information. Axonal length and propagation speed largely determine the time necessary for action potentials to reach postsynaptic neurons. Within the retina, retinal ganglion cell (RGC) axons form the retinal nerve fiber layer (RNFL), a highly organized layer with species-specific axonal arrangements. The human RNFL is characterized by unmyelinated axons, resulting in slow signal transmission, and by the presence of the fovea, a specialized region enabling high-resolution vision located temporally to the optic nerve head (i.