Benchmarking

Genome annotation connects assembled sequences with functional information, but many sequenced genomes remain unannotated and large-scale annotation is difficult to standardise and evaluate. The Australian Tree of Life Bioinformatics Group and international biodiversity researchers are working to automate genome assembly and annotation so that researchers without specialist bioinformatics expertise can use them. During an industry placement hosted by the Australian Genome Research Facility with Australian BioCommons, University of Queensland PhD candidate Jane Tung compared current annotation

…time evolution, with implications for benchmarking, cryptographic protocols and fundamental physics.

…multi-modal LLMs, robotics, datasets, benchmarking, efficiency, and more. With the rapid development of techniques and regular breakthroughs in LLM research, it has become considerably challenging to perceive the bigger picture of the ad

…tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, we developed SpikeInterface, a Python framework designed to unify preexisting spike sorting technologies into a single codebase and to facilitate straightforward comparison and adoption of different approaches. With a few lines of code, researchers can reproducibly run, compare, and