ModuleXplore: A user-friendly Shiny application to compare gene co-expression modules within and across transcriptomic datasets
Rachel Smith · Neuromatch 5
Wed, Sep 28, 2022
Weighted Gene Co-expression Network Analysis (WGCNA) is a widely used bioinformatics method that defines gene clusters (modules) based on correlated expression levels, allowing users to study relationships between modules, define groups of genes subserving common biological functions, and compare network topologies across distinct sets of expression data. WGCNA overcomes many challenges of gene-based studies, but it remains difficult to compare WGCNA results across studies, since gene modules are highly dependent on user parameters, experimental conditions, and other variables. As such, no con