Topic: Decoding

Seminar
6 seminars
SeminarBrain Imaging

“Mind reading” with brain scanners: Facts versus science fiction

John-Dylan Haynes
Charité - Universitätsmedizin, Berlin; Center for Advanced Neuroimaging; Bernstein Center for Computational Neuroscience
Nov 22, 2021

Every thought is associated with a unique pattern of brain activity. Thus, in principle, it should be possible to use these activity patterns as "brain fingerprints" for different thoughts and to read out what a person is thinking based on their brain activity alone. Indeed, using machine learning considerable progress has been made in such "brainreading" in recent years. It is now possible to decode which image a person is viewing, which film sequence they are watching, which emotional state they are in or which intentions they hold in mind. This talk will provide an overview of the current state of the art in brain reading. It will also highlight the main challenges and limitations of this research field. For example, mathematical models are needed to cope with the high dimensionality of potential mental states. Furthermore, the ethical concerns raised by (often premature) commercial applications of brain reading will also be discussed.

SeminarNeuroscienceRecording

Encoding and perceiving the texture of sounds: auditory midbrain codes for recognizing and categorizing auditory texture and for listening in noise

Monty Escabi
University of Connecticut
Oct 1, 2021

Natural soundscapes such as from a forest, a busy restaurant, or a busy intersection are generally composed of a cacophony of sounds that the brain needs to interpret either independently or collectively. In certain instances sounds - such as from moving cars, sirens, and people talking - are perceived in unison and are recognized collectively as single sound (e.g., city noise). In other instances, such as for the cocktail party problem, multiple sounds compete for attention so that the surrounding background noise (e.g., speech babble) interferes with the perception of a single sound source (e.g., a single talker). I will describe results from my lab on the perception and neural representation of auditory textures. Textures, such as a from a babbling brook, restaurant noise, or speech babble are stationary sounds consisting of multiple independent sound sources that can be quantitatively defined by summary statistics of an auditory model (McDermott & Simoncelli 2011). How and where in the auditory system are summary statistics represented and the neural codes that potentially contribute towards their perception, however, are largely unknown. Using high-density multi-channel recordings from the auditory midbrain of unanesthetized rabbits and complementary perceptual studies on human listeners, I will first describe neural and perceptual strategies for encoding and perceiving auditory textures. I will demonstrate how distinct statistics of sounds, including the sound spectrum and high-order statistics related to the temporal and spectral correlation structure of sounds, contribute to texture perception and are reflected in neural activity. Using decoding methods I will then demonstrate how various low and high-order neural response statistics can differentially contribute towards a variety of auditory tasks including texture recognition, discrimination, and categorization. Finally, I will show examples from our recent studies on how high-order sound statistics and accompanying neural activity underlie difficulties for recognizing speech in background noise.

SeminarBrain Imaging

Imaging memory consolidation in wakefulness and sleep

Monika Schönauer
Albert-Ludwigs-Univery of Freiburg
Jun 17, 2021

New memories are initially labile and have to be consolidated into stable long-term representations. Current theories assume that this is supported by a shift in the neural substrate that supports the memory, away from rapidly plastic hippocampal networks towards more stable representations in the neocortex. Rehearsal, i.e. repeated activation of the neural circuits that store a memory, is thought to crucially contribute to the formation of neocortical long-term memory representations. This may either be achieved by repeated study during wakefulness or by a covert reactivation of memory traces during offline periods, such as quiet rest or sleep. My research investigates memory consolidation in the human brain with multivariate decoding of neural processing and non-invasive in-vivo imaging of microstructural plasticity. Using pattern classification on recordings of electrical brain activity, I show that we spontaneously reprocess memories during offline periods in both sleep and wakefulness, and that this reactivation benefits memory retention. In related work, we demonstrate that active rehearsal of learning material during wakefulness can facilitate rapid systems consolidation, leading to an immediate formation of lasting memory engrams in the neocortex. These representations satisfy general mnemonic criteria and cannot only be imaged with fMRI while memories are actively processed but can also be observed with diffusion-weighted imaging when the traces lie dormant. Importantly, sleep seems to hold a crucial role in stabilizing the changes in the contribution of memory systems initiated by rehearsal during wakefulness, indicating that online and offline reactivation might jointly contribute to forming long-term memories. Characterizing the covert processes that decide whether, and in which ways, our brains store new information is crucial to our understanding of memory formation. Directly imaging consolidation thus opens great opportunities for memory research.

SeminarNeuroscienceRecording

High precision coding in visual cortex

Carsen Stringer
Janelia
Jan 8, 2021

Individual neurons in visual cortex provide the brain with unreliable estimates of visual features. It is not known if the single-neuron variability is correlated across large neural populations, thus impairing the global encoding of stimuli. We recorded simultaneously from up to 50,000 neurons in mouse primary visual cortex (V1) and in higher-order visual areas and measured stimulus discrimination thresholds of 0.35 degrees and 0.37 degrees respectively in an orientation decoding task. These neural thresholds were almost 100 times smaller than the behavioral discrimination thresholds reported in mice. This discrepancy could not be explained by stimulus properties or arousal states. Furthermore, the behavioral variability during a sensory discrimination task could not be explained by neural variability in primary visual cortex. Instead behavior-related neural activity arose dynamically across a network of non-sensory brain areas. These results imply that sensory perception in mice is limited by downstream decoders, not by neural noise in sensory representations.

SeminarVision Science

A new computational framework for understanding vision in our brain

Zhaoping Li
University of Tuebingen and Max Planck Institute
Jul 19, 2020

Visual attention selects only a tiny fraction of visual input information for further processing. Selection starts in the primary visual cortex (V1), which creates a bottom-up saliency map to guide the fovea to selected visual locations via gaze shifts. This motivates a new framework that views vision as consisting of encoding, selection, and decoding stages, placing selection on center stage. It suggests a massive loss of non-selected information from V1 downstream along the visual pathway. Hence, feedback from downstream visual cortical areas to V1 for better decoding (recognition), through analysis-by- synthesis, should query for additional information and be mainly directed at the foveal region. Accordingly, non-foveal vision is not only poorer in spatial resolution, but also more susceptible to many illusions.

SeminarNeuroscienceRecording

Decoding of Chemical Information from Populations of Olfactory Neurons

Pedro Herrero-Vidal
New York University
May 6, 2020

Information is represented in the brain by the coordinated activity of populations of neurons. Recent large-scale neural recording methods in combination with machine learning algorithms are helping understand how sensory processing and cognition emerge from neural population activity. This talk will explore the most popular machine learning methods used to gather meaningful low-dimensional representations from higher-dimensional neural recordings. To illustrate the potential of these approaches, Pedro will present his research in which chemical information is decoded from the olfactory system of the mouse for technological applications. Pedro and co-researchers have successfully extracted odor identity and concentration from olfactory receptor neuron low-dimensional activity trajectories. They have further developed a novel method to identify a shared latent space that allowed decoding of odor information across animals.

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