Active learning of neural population dynamics
Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, I will discuss ongoing development of active learning techniques to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Presented in the van Vreeswijk Theoretical Neuroscience Seminar series (formerly WWTNS) on 2025-02-05. Recording duration: 00:42:29.
Probing neural population dynamics with recurrent neural networks
Large-scale recordings of neural activity are providing new opportunities to study network-level dynamics with unprecedented detail. However, the sheer volume of data and its dynamical complexity are major barriers to uncovering and interpreting these dynamics. I will present latent factor analysis via dynamical systems, a sequential autoencoding approach that enables inference of dynamics from neuronal population spiking activity on single trials and millisecond timescales. I will also discuss recent adaptations of the method to uncover dynamics from neural activity recorded via 2P Calcium imaging. Finally, time permitting, I will mention recent efforts to improve the interpretability of deep-learning based dynamical systems models.
Neural computations underlying the regulation of motivated behavior
As we interact with the world around us, we experience a constant stream of sensory inputs, and must generate a constant stream of behavioral actions. What makes brains more than simple input-output machines is their capacity to integrate sensory inputs with an animal’s own internal motivational state to produce behavior that is flexible and adaptive. Working with neural recordings from subcortical structures involved in regulation of survival behaviors, we show how the dynamical properties of neural populations give rise to motivational states that change animal behavior on a timescale of minutes. We also show how neuromodulation can alter these dynamics to change behavior on timescales of hours to days. Presented in the van Vreeswijk Theoretical Neuroscience Seminar series (formerly WWTNS) on 2024-01-17. Recording duration: 00:42:58.
NMC4 Keynote: Latent variable modeling of neural population dynamics - where do we go from here?
Large-scale recordings of neural activity are providing new opportunities to study network-level dynamics with unprecedented detail. However, the sheer volume of data and its dynamical complexity are major barriers to uncovering and interpreting these dynamics. I will present machine learning frameworks that enable inference of dynamics from neuronal population spiking activity on single trials and millisecond timescales, from diverse brain areas, and without regard to behavior. I will then demonstrate extensions that allow recovery of dynamics from two-photon calcium imaging data with surprising precision. Finally, I will discuss our efforts to facilitate comparisons within our field by curating datasets and standardizing model evaluation, including a currently active modeling challenge, the 2021 Neural Latents Benchmark [neurallatents.github.io].
Neural Population Dynamics for Skilled Motor Control
The ability to reach, grasp, and manipulate objects is a remarkable expression of motor skill, and the loss of this ability in injury, stroke, or disease can be devastating. These behaviors are controlled by the coordinated activity of tens of millions of neurons distributed across many CNS regions, including the primary motor cortex. While many studies have characterized the activity of single cortical neurons during reaching, the principles governing the dynamics of large, distributed neural populations remain largely unknown. Recent work in primates has suggested that during the execution of reaching, motor cortex may autonomously generate the neural pattern controlling the movement, much like the spinal central pattern generator for locomotion. In this seminar, I will describe recent work that tests this hypothesis using large-scale neural recording, high-resolution behavioral measurements, dynamical systems approaches to data analysis, and optogenetic perturbations in mice. We find, by contrast, that motor cortex requires strong, continuous, and time-varying thalamic input to generate the neural pattern driving reaching. In a second line of work, we demonstrate that the cortico-cerebellar loop is not critical for driving the arm towards the target, but instead fine-tunes movement parameters to enable precise and accurate behavior. Finally, I will describe my future plans to apply these experimental and analytical approaches to the adaptive control of locomotion in complex environments.
Low Dimensional Manifolds for Neural Dynamics
The ability to simultaneously record the activity from tens to thousands to tens of thousands of neurons has allowed us to analyze the computational role of population activity as opposed to single neuron activity. Recent work on a variety of cortical areas suggests that neural function may be built on the activation of population-wide activity patterns, the neural modes, rather than on the independent modulation of individual neural activity. These neural modes, the dominant covariation patterns within the neural population, define a low dimensional neural manifold that captures most of the variance in the recorded neural activity. We refer to the time-dependent activation of the neural modes as their latent dynamics, and argue that latent cortical dynamics within the manifold are the fundamental and stable building blocks of neural population activity. Presented in the van Vreeswijk Theoretical Neuroscience Seminar series (formerly WWTNS) on 2021-03-17. Recording duration: 00:47:16.
Predictive processing in the macaque frontal cortex during time estimation
According to the theory of predictive processing, expectations modulate neural activity so as to optimize the processing of sensory inputs expected in the current environment. While there is accumulating evidence that the brain indeed operates under this principle, most of the attention has been placed on mechanisms that rely on static coding properties of neurons. The potential contribution of dynamical features, such as those reflected in the evolution of neural population dynamics, has thus far been overlooked. In this talk, I will present evidence for a novel mechanism for predictive processing in the temporal domain which relies on neural population dynamics. I will use recordings from the frontal cortex of macaques trained on a time interval reproduction task and show how neural dynamics can be directly related to animals’ temporal expectations, both in a stationary environment and during learning.