Evolutionary Biology seminars

David Reich examines how sequencing DNA from ancient human remains has changed the reconstruction of population history. Genetic evidence from past cultures can reveal relationships and movements that are difficult to infer from living populations alone, sometimes challenging interpretations based on archaeology, language and written history. The lecture explores what these discoveries imply for understanding shared and complex human ancestries, and how knowledge of the past could inform the study of human health. A discussion with Carl Zimmer connects the research to the interpretation and communication of evidence about human history. The programme extends the paleogenomic research associated with the 2022 medicine prize through recent work on ancient and modern human DNA.

In theoretical neuroscience, the brain is usually described as an information processing system that encodes and manipulates representations of knowledge to produce plans of action. This view leads to a decomposition of brain functions into putative processes such as object recognition, working memory, decision-making, action planning, etc., inspiring the search for the neural correlates of these processes. However, neurophysiological data do not support many of the predictions of these classic subdivisions. Instead, there is divergence and broad distribution of functions that should be unified, mixed representations combining functions that should be distinct, and a general incompatibility with the conceptual subdivisions posited by theories of information processing. In this talk, I will explore the possibility of resynthesizing a different set of functional subdivisions, guided by the growing body of data on the evolutionary process that produced the human brain. I will summarize, in chronological order, a proposed sequence of innovations that appeared in nervous systems along the lineage that leads from the earliest multicellular animals to humans. Along the way, functional subdivisions and elaborations will be introduced in parallel with the neural specializations that made them possible, gradually building up an alternative conceptual taxonomy of brain functions. These functions emphasize mechanisms for real-time interaction with the world, rather than for building explicit knowledge of the world, and the relevant representations emphasize pragmatic outcomes rather than decoding accuracy, mixing variables in the way seen in real neural data. I suggest that this alternative taxonomy may better delineate the real functional pieces into which the brain is organized, and can offer a more natural mapping between behavior and neural mechanisms. Presented in the van Vreeswijk Theoretical Neuroscience Seminar series (formerly WWTNS) on 2024-03-13. Recording duration: 00:52:50.

Svante Pääbo explains how DNA recovered from ancient remains opened an experimental route to studying extinct human relatives. The lecture follows the technical challenge of extracting reliable genetic information from small, degraded and contaminated samples, through the reconstruction of Neanderthal genomes and the identification of Denisovans. Comparisons with living people reveal interbreeding between archaic hominins and the ancestors of present-day humans. Pääbo connects those findings to questions about human origins, the genetic changes that distinguish modern humans, and the continuing biological effects of inherited archaic variants. The account shows how methodological advances in paleogenomics changed both the history of human populations and the questions that can be asked about human biology.

Brains do not fossilise, but as they grow and expand during fetal and infant development, they leave an imprint in the bony braincase. Such imprints of fossilised braincases provide direct evidence of brain evolution, but the underlying biological changes have remained elusive. Combining data from fossil skulls, ancient genomes, brain imaging and gene expression helps shed light on the evolutionary changes shaping the human brain. I will highlight two examples separated by more than 3 million years: the evolution of brain growth in Lucy and her kind, and differences between modern humans and Neanderthals.

The evolution of vision revolutionised animal biology, and eyes have evolved in a stunning array of diverse forms over the past half a billion years. Among these are curious duplicated visual systems, where eyes can be spread across the body and specialised for different tasks. Although it sounds radical, duplicated vision is found in most major groups across the animal kingdom, but remains poorly understood. We will explore how and why animals collect information about their environment in this unusual way, looking at examples from tropical forests to the sea floor, and from ancient arthropods to living jellyfish. Have we been short-changed with just two eyes? Dr Lauren Sumner-Rooney is a Research Fellow at the OUMNH studying the function and evolution of animal visual systems. Lauren completed her undergraduate degree at Oxford in 2012, and her PhD at Queen’s University Belfast in 2015. She worked as a research technician and science communicator at the Royal Veterinary College (2015-2016) and held a postdoctoral research fellowship at the Museum für Naturkunde, Berlin (2016-2017) before arriving at the Museum in 2017.

Bioluminescence, which is rare on land, is extremely common in the deep sea, being found in 80% of the animals living between 200 and 1000 m. These animals rely on bioluminescence for communication, feeding, and/or defense, so the generation and detection of light is essential to their survival. Our present knowledge of this phenomenon has been limited due to the difficulty in bringing up live deep-sea animals to the surface, and the lack of proper techniques needed to study this complex system. However, new genomic techniques are now available, and a team with extensive experience in deep-sea biology, vision, and genomics has been assembled to lead this project. This project is aimed to study three questions 1) What are the evolutionary patterns of different types of bioluminescence in deep-sea shrimp? 2) How are deep-sea organisms’ eyes adapted to detect bioluminescence? 3) Can bioluminescent organs (called photophores) detect light in addition to emitting light? Findings from this study will provide valuable insight into a complex system vital to communication, defense, camouflage, and species recognition. This study will bring monumental contributions to the fields of deep sea and evolutionary biology, and immediately improve our understanding of bioluminescence and light detection in the marine environment. In addition to scientific advancement, this project will reach K-college aged students through the development and dissemination of educational tools, a series of molecular and organismal-based workshops, museum exhibits, public seminars, and biodiversity initiatives.

Biological systems can self-organize in complex structures, able to evolve and adapt to widely varying environmental conditions. Despite the importance of fluid flow for transporting and organizing populations, few laboratory systems exist to systematically investigate the impact of advection on their spatial evolutionary dynamics. In this talk, I will discuss how we can address this problem by studying the morphology and genetic spatial structure of microbial colonies growing on the surface of a viscous substrate. When grown on a liquid, I will show that S. cerevisiae (baker’s yeast) can behave like “active matter” and collectively generate a fluid flow many times larger than the unperturbed colony expansion speed, which in turn produces mechanical stresses and fragmentation of the initial colony. Combining laboratory experiments with numerical modeling, I will demonstrate that the coupling between metabolic activity and hydrodynamic flows can produce positive feedbacks and drive preferential growth phenomena leading to the formation of microbial jets. Our work provides rich opportunities to explore the interplay between hydrodynamics, growth and competition within a versatile system.

Many animals are highly visual. They view their world through photoreceptors sensitive to different wavelengths of light. Animal survival and optimal behavioral performance may select for varying photoreceptor sensitivities depending on animal habitat or visual tasks. Our goal is to understand what drives visual diversity from both an evolutionary and molecular perspective. The group of more than 2000 cichlid fish species are an ideal system for examining such diversity. Cichlid are a colorful group of fresh water fishes. They have undergone adaptive radiation throughout Africa and the new world and occur in rivers and lakes that vary in water clarity. They are also behaviorally complex, having diverse behaviors for foraging, mate choice and even parental care. As a result, cichlids have highly diverse visual systems with cone sensitivities shifting by 30-90 nm between species. Although this group has seven cone opsin genes, individual species differ in which subset of the cone opsins they express. Some species show developmental shifts in opsin expression, switching from shorter to longer wavelength opsins through ontogeny. Other species modify that developmental program to express just one of the sets, causing the large sensitivity differences. Cichlids are therefore natural mutants for opsin expression. We have used cichlid diversity to explore the relationship between visual sensitivities and ecology. We have also exploited the genomic power of the cichlid system to identify genes and mutations that cause opsin expression shifts. Ultimately, our goal is to learn how different cichlid species see the world and whether differences matter. Behavioral experiments suggest they do indeed use color vision to survive and thrive. Cichlids therefore are a unique model for exploring how visual systems evolve in a changing world.

Eyes abound in the animal kingdom. Some are large as basketballs and others are just fractions of a millimetre. Eyes also come in many different types, such as the compound eyes of insects, the mirror eyes of scallopsor our own camera-like eyes. Common to all animal eyes is that they serve the same fundamental role of collecting external information for guidingthe animal’s behaviour. But behaviours vary tremendously across the animal kingdom, and it turns outthis is the key to understand how eyes evolved. The lecture will take a tour from the first animals that could only sense the presence of light, to those that saw the first crude image of the world and finally to animals that use acute vision for interacting with otheranimals. Amazingly, all these stages of eye evolution still exist in animals living today, and this is how we can unravel the evolution of behaviours that has been the driving force behind eye evolution

Over the last fifteen years, Simona Ginsburg and I developed an evolutionary approach for studying basic consciousness, suggesting that the evolution of learning drove the evolutionary transition to from non-conscious to conscious animals. I present the rationale underlying this thesis, which has led to the identification of a capacity that we call the evolutionary transition marker, which, when we find evidence of it, we have evidence that the major evolutionary transition in which we are interested has gone to completion. I then put forward our proposal that the evolutionary marker of basic consciousness is a complex form of associative learning that we call unlimited associative learning (UAL), and that the evolution of this capacity drove the transition to consciousness. I discuss the implications of this thesis for questions pertaining to the neural dynamics that constitute conscious, to its taxonomic distribution and to the ecological context in which it first emerged. I end by pointing to some of the ways in which the relationship between UAL and consciousness can be experimentally tested in humans and in non-human animals.

Colonies of ants and other eusocial insects are superorganisms, which perform sophisticated cognitive-like functions at the level of the group. In my talk I will review our efforts to establish the clonal raider ant Ooceraea biroi as a lab model system for the systematic study of the principles underlying collective information processing in ant colonies. I will use results from two separate projects to demonstrate the potential of this model system: In the first, we analyze the foraging behavior of the species, known as group raiding: a swift offensive response of a colony to the detection of a potential prey by a scout. By using automated behavioral tracking and detailed analysis we show that this behavior is closely related to the army ant mass raid, an iconic collective behavior in which hundreds of thousands of ants spontaneously leave the nest to go hunting, and that the evolutionary transition between the two can be explained by a change in colony size alone. In the second project, we study the emergence of a collective sensory response threshold in a colony. The sensory threshold is a fundamental computational primitive, observed across many biological systems. By carefully controlling the sensory environment and the social structure of the colonies we were able to show that it also appear in a collective context, and that it emerges out of a balance between excitatory and inhibitory interactions between ants. Furthermore, by using a mathematical model we predict that these two interactions can be mapped into known mechanisms of communication in ants. Finally, I will discuss the opportunities for understanding collective behavior that are opening up by the development of methods for neuroimaging and neurocontrol of our ants.

Our study reveals the most elaborate opsin expression patterns ever described in any animal eye. In mantis shrimp, a pugnacious crustacean renowned for its visual sophistication, we found unexpected retinal expression patterns highlighting the potential for cryptic photoreceptor functional diversity, including single photoreceptors that coexpress opsins from different spectral clades and a single opsin with a putative nonvisual function important in color vision. This study demonstrates the evolutionary potential for increasing visual system functional diversity through opsin gene duplication and diversification, as well as changes in patterns of gene coexpression among photoreceptors and retinula cells. These results have significant implications for the function of other visual systems, particularly in arthropods where large numbers of retinally expressed opsins have been documented.

Narratives of human evolution have focused on cortical expansion and increases in brain size relative to body size, but considered that changes in life history, such as in age at sexual maturity and thus the extent of childhood and maternal dependence, or maximal longevity, are evolved features that appeared as consequences of selection for increased brain size, or increased cognitive abilities that decrease mortality rates, or due to selection for grandmotherly contribution to feeding the young. Here I build on my recent finding that slower life histories universally accompany increased numbers of cortical neurons across warm-blooded species to propose a simpler framework for human evolution: that slower development to sexual maturity and increased post-maturity longevity are features that do not require selection, but rather inevitably and immediately accompany evolutionary increases in numbers of cortical neurons, thus fostering human social interactions and cultural and technological evolution as generational overlap increases.

What psychological mechanisms do primates use to engage in self-control, and what is the ultimate function of these skills? I will argue that a suite of decision-making capacities, including choices about the timing of benefits, evolved in the context of foraging behaviors and vary with ecological complexity across species. Then, I will examine how these foraging capacities can be generalized to solve novel problems posing temporal costs that are important for humans, such as cooking food, and can therefore underpin evolutionary transitions in behavior. Finally, I will present work testing the hypothesis that a limited future time horizon constrains the expression of other complex abilities in nonhumans, explaining the emergence of human-unique forms of social cognition and behavior.