Biological Complexity
biological complexity
Towards multipurpose biophysics-based mathematical models of cortical circuits
Starting with the work of Hodgkin and Huxley in the 1950s, we now have a fairly good understanding of how the spiking activity of neurons can be modelled mathematically. For cortical circuits the understanding is much more limited. Most network studies have considered stylized models with a single or a handful of neuronal populations consisting of identical neurons with statistically identical connection properties. However, real cortical networks have heterogeneous neural populations and much more structured synaptic connections. Unlike typical simplified cortical network models, real networks are also “multipurpose” in that they perform multiple functions. Historically the lack of computational resources has hampered the mathematical exploration of cortical networks. With the advent of modern supercomputers, however, simulations of networks comprising hundreds of thousands biologically detailed neurons are becoming feasible (Einevoll et al, Neuron, 2019). Further, a large-scale biologically network model of the mouse primary visual cortex comprising 230.000 neurons has recently been developed at the Allen Institute for Brain Science (Billeh et al, Neuron, 2020). Using this model as a starting point, I will discuss how we can move towards multipurpose models that incorporate the true biological complexity of cortical circuits and faithfully reproduce multiple experimental observables such as spiking activity, local field potentials or two-photon calcium imaging signals. Further, I will discuss how such validated comprehensive network models can be used to gain insights into the functioning of cortical circuits.
Spanning the arc between optimality theories and data
Ideas about optimization are at the core of how we approach biological complexity. Quantitative predictions about biological systems have been successfully derived from first principles in the context of efficient coding, metabolic and transport networks, evolution, reinforcement learning, and decision making, by postulating that a system has evolved to optimize some utility function under biophysical constraints. Yet as normative theories become increasingly high-dimensional and optimal solutions stop being unique, it gets progressively hard to judge whether theoretical predictions are consistent with, or "close to", data. I will illustrate these issues using efficient coding applied to simple neuronal models as well as to a complex and realistic biochemical reaction network. As a solution, we developed a statistical framework which smoothly interpolates between ab initio optimality predictions and Bayesian parameter inference from data, while also permitting statistically rigorous tests of optimality hypotheses.