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Fiber Photometry

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fiber photometry

Discover seminars, jobs, and research tagged with fiber photometry across World Wide.
14 curated items6 Seminars5 ePosters3 Positions
Updated 1 day ago
14 items · fiber photometry
14 results
Position

Dr Jonathan Tang

Seattle Children’s Research Institute
Seattle, USA
Dec 5, 2025

This position will focus on the neural mechanisms underlying action learning in mice. Scientifically the project aims to understand the neural circuits, activities and behavioral dynamics behind how animals learn what actions to take for reward. Dopaminergic systems and associated circuitries will be the focus of investigation. This lab integrates wireless inertial sensors, closed loop algorithms, optogenetics and neural recording to pursue this goal.

Position

Bianca Silva

National Research Council of Italy, Humanitas Research Hospital
Milan, Italy
Dec 5, 2025

The newly established Silva lab is seeking a Postdoctoral Fellow to study midline thalamic circuits in fear memory and fear extinction in the mouse. The Silva lab combines whole-brain functional tracing, chemogenetics, optogenetics and in vivo fiber photometry to investigate thalamic circuits involved in emotional regulation. We recently discovered that the nucleus reuniens of the thalamus mediates extinction of remote (older than 30 days) fear memories (Silva et al. Nat. Neurosci. 2021) and we are currently working to unravel its functional upstream and downstream partners. The successful candidate will design and implement experiments to elucidate and characterize the NRe-centered whole-brain circuit and identify its putative neurophysiological impairments in mouse models of PTSD. Experience with behavioral studies, stereotactic surgeries, programming, whole-brain microscopy or causal neuroscience is a plus, but is not required. The successful candidate should be highly motivated and have the ability to successfully lead a research project. The Silva lab is affiliated to the Institute of Neuroscience at the National Research Council of Italy and is located at the Neurocenter of the Humanitas Research Hospital in Rozzano, MI (https://www.humanitas-research.org/). Applicants should contact Bianca Silva (bianca.silva@in.cnr.it) with a current CV and a motivation letter. The position is full-time for 1 year, and renewable for other two. The position is immediately available and is funded by a 3-year grant by Cariplo Foundation. Within the first year, application to prestigious international postdoctoral fellowships (EMBO, Marie Curie, HFSP) is highly encouraged. Selected candidates will be directly contacted for interviews. After interview two reference letters will be requested.

PositionNeuroscience

Dr. Demian Battaglia/Dr. Romain Goutagny

University of Strasbourg, Functional System's Dynamics team – FunSy
University of Strasbourg, France
Dec 5, 2025

The postdoc position is under the joint co-mentoring of Dr. Demian Battaglia and Dr. Romain Goutagny at the University of Strasbourg, France, in the Functional System's Dynamics team – FunSy. The position starts as soon as possible and can last up to two years. The job offer is funded by the French ANR 'HippoComp' project, which focuses on the complexity of hippocampal oscillations and the hypothesis that such complexity can serve as a computational resource. The team performs electrophysiological recordings in the hippocampus and cortex during spatial navigation and memory tasks in mice (wild type and mutant developing various neuropathologies) and have access to vast data through local and international cooperation. They use a large spectrum of computational tools ranging from time-series and network analyses, information theory, and machine-learning to multi-scale computational modeling.

SeminarNeuroscienceRecording

Combined electrophysiological and optical recording of multi-scale neural circuit dynamics

Chris Lewis
University of Zurich
Apr 29, 2024

This webinar will showcase new approaches for electrophysiological recordings using our silicon neural probes and surface arrays combined with diverse optical methods such as wide-field or 2-photon imaging, fiber photometry, and optogenetic perturbations in awake, behaving mice. Multi-modal recording of single units and local field potentials across cortex, hippocampus and thalamus alongside calcium activity via GCaMP6F in cortical neurons in triple-transgenic animals or in hippocampal astrocytes via viral transduction are brought to bear to reveal hitherto inaccessible and under-appreciated aspects of coordinated dynamics in the brain.

SeminarNeuroscience

Identifying central mechanisms of glucocorticoid circadian rhythm dysfunction in breast cancer

Jeremy C. Borniger
Cold Spring Harbor Laboratory
Oct 17, 2022

The circadian release of endogenous glucocorticoids is essential in preparing and synchronizing the body’s daily physiological needs. Disruption in the rhythmic activity of glucocorticoids has been observed in individuals with a variety of cancer types, and blunting of this rhythm has been shown to predict cancer mortality and declines in quality of life. This suggests that a disrupted glucocorticoid rhythm is potentially a shared phenotype across cancers. However, where this phenomenon is driven by the cancer itself, and the causal mechanisms that link glucocorticoid rhythm dysfunction and cancer outcomes remain preliminary at best. The regulation of daily glucocorticoid activity has been well-characterized and is maintained, in part, by the coordinated response of the hypothalamic-pituitary-adrenal (HPA) axis, consisting of the suprachiasmatic nucleus (SCN) and corticotropin-releasing hormone-expressing neurons of the paraventricular nucleus of the hypothalamus (PVNCRH). Consequently, we set out to examine if cancer-induced glucocorticoid dysfunction is regulated by disruptions within these hypothalamic nuclei. In comparison to their tumor-free baseline, mammary tumor-bearing mice exhibited a blunting of glucocorticoid rhythms across multiple timepoints throughout the day, as measured by the overall levels and the slope of fecal corticosterone rhythms, during tumor progression. We further examined how peripheral tumors shape hypothalamic activity within the brain. Serial two-photon tomography for whole-brain cFos imaging suggests a disrupted activation of the PVN in mice with tumors. Additionally, we found GFP labeled CRH+ neurons within the PVN after injection of pseudorabies virus expressing GFP into the tumor, pointing to the PVN as a primary target disrupted by mammary tumors. Preliminary in vivo fiber photometry data show that PVNCRH neurons exhibit enhanced calcium activity during tumor progression, as compared to baseline (no tumor) activity. Taken together, this suggests that there may be an overactive HPA response during tumor progression, which in turn, may result in a subsequent negative feedback on glucocorticoid rhythms. Current studies are examining whether tumor progression modulates SCN calcium activity, how the transcriptional profile of PVNCRH neurons is changed, and test if manipulation of the neurocircuitry surrounding glucocorticoid rhythmicity alters tumor characteristics.

SeminarNeuroscienceRecording

Dynamic dopaminergic signaling probabilistically controls the timing of self-timed movements

Allison Hamilos
Assad Lab, Harvard University
Feb 22, 2022

Human movement disorders and pharmacological studies have long suggested molecular dopamine modulates the pace of the internal clock. But how does the endogenous dopaminergic system influence the timing of our movements? We examined the relationship between dopaminergic signaling and the timing of reward-related, self-timed movements in mice. Animals were trained to initiate licking after a self-timed interval following a start cue; reward was delivered if the animal’s first lick fell within a rewarded window (3.3-7 s). The first-lick timing distributions exhibited the scalar property, and we leveraged the considerable variability in these distributions to determine how the activity of the dopaminergic system related to the animals’ timing. Surprisingly, dopaminergic signals ramped-up over seconds between the start-timing cue and the self-timed movement, with variable dynamics that predicted the movement/reward time, even on single trials. Steeply rising signals preceded early initiation, whereas slowly rising signals preceded later initiation. Higher baseline signals also predicted earlier self-timed movement. Optogenetic activation of dopamine neurons during self-timing did not trigger immediate movements, but rather caused systematic early-shifting of the timing distribution, whereas inhibition caused late-shifting, as if dopaminergic manipulation modulated the moment-to-moment probability of unleashing the planned movement. Consistent with this view, the dynamics of the endogenous dopaminergic signals quantitatively predicted the moment-by-moment probability of movement initiation. We conclude that ramping dopaminergic signals, potentially encoding dynamic reward expectation, probabilistically modulate the moment-by-moment decision of when to move. (Based on work from Hamilos et al., eLife, 2021).

SeminarNeuroscience

Dissecting the role of accumbal D1 and D2 medium spiny neurons in information encoding

Munir Gunes Kutlu
Calipari Lab, Vanderbilt University
Feb 8, 2022

Nearly all motivated behaviors require the ability to associate outcomes with specific actions and make adaptive decisions about future behavior. The nucleus accumbens (NAc) is integrally involved in these processes. The NAc is a heterogeneous population primarily composed of D1 and D2 medium spiny projection (MSN) neurons that are thought to have opposed roles in behavior, with D1 MSNs promoting reward and D2 MSNs promoting aversion. Here we examined what types of information are encoded by the D1 and D2 MSNs using optogenetics, fiber photometry, and cellular resolution calcium imaging. First, we showed that mice responded for optical self-stimulation of both cell types, suggesting D2-MSN activation is not inherently aversive. Next, we recorded population and single cell activity patterns of D1 and D2 MSNs during reinforcement as well as Pavlovian learning paradigms that allow dissociation of stimulus value, outcome, cue learning, and action. We demonstrated that D1 MSNs respond to the presence and intensity of unconditioned stimuli – regardless of value. Conversely, D2 MSNs responded to the prediction of these outcomes during specific cues. Overall, these results provide foundational evidence for the discrete aspects of information that are encoded within the NAc D1 and D2 MSN populations. These results will significantly enhance our understanding of the involvement of the NAc MSNs in learning and memory as well as how these neurons contribute to the development and maintenance of substance use disorders.

SeminarOpen SourceRecording

GuPPy, a Python toolbox for the analysis of fiber photometry data

Talia Lerner
Northwestern University
Nov 23, 2021

Fiber photometry (FP) is an adaptable method for recording in vivo neural activity in freely behaving animals. It has become a popular tool in neuroscience due to its ease of use, low cost, the ability to combine FP with freely moving behavior, among other advantages. However, analysis of FP data can be a challenge for new users, especially those with a limited programming background. Here, we present Guided Photometry Analysis in Python (GuPPy), a free and open-source FP analysis tool. GuPPy is provided as a Jupyter notebook, a well-commented interactive development environment (IDE) designed to operate across platforms. GuPPy presents the user with a set of graphic user interfaces (GUIs) to load data and provide input parameters. Graphs produced by GuPPy can be exported into various image formats for integration into scientific figures. As an open-source tool, GuPPy can be modified by users with knowledge of Python to fit their specific needs.

SeminarNeuroscience

A brain circuit for curiosity

Mehran Ahmadlou
Netherlands Institute for Neuroscience
Jul 11, 2021

Motivational drives are internal states that can be different even in similar interactions with external stimuli. Curiosity as the motivational drive for novelty-seeking and investigating the surrounding environment is for survival as essential and intrinsic as hunger. Curiosity, hunger, and appetitive aggression drive three different goal-directed behaviors—novelty seeking, food eating, and hunting— but these behaviors are composed of similar actions in animals. This similarity of actions has made it challenging to study novelty seeking and distinguish it from eating and hunting in nonarticulating animals. The brain mechanisms underlying this basic survival drive, curiosity, and novelty-seeking behavior have remained unclear. In spite of having well-developed techniques to study mouse brain circuits, there are many controversial and different results in the field of motivational behavior. This has left the functions of motivational brain regions such as the zona incerta (ZI) still uncertain. Not having a transparent, nonreinforced, and easily replicable paradigm is one of the main causes of this uncertainty. Therefore, we chose a simple solution to conduct our research: giving the mouse freedom to choose what it wants—double freeaccess choice. By examining mice in an experimental battery of object free-access double-choice (FADC) and social interaction tests—using optogenetics, chemogenetics, calcium fiber photometry, multichannel recording electrophysiology, and multicolor mRNA in situ hybridization—we uncovered a cell type–specific cortico-subcortical brain circuit of the curiosity and novelty-seeking behavior. We found in mice that inhibitory neurons in the medial ZI (ZIm) are essential for the decision to investigate an object or a conspecific. These neurons receive excitatory input from the prelimbic cortex to signal the initiation of exploration. This signal is modulated in the ZIm by the level of investigatory motivation. Increased activity in the ZIm instigates deep investigative action by inhibiting the periaqueductal gray region. A subpopulation of inhibitory ZIm neurons expressing tachykinin 1 (TAC1) modulates the investigatory behavior.

ePoster

Characterization of transcranial focused ultrasound stimulation using calcium imaging with fiber photometry in mice

Zahraa Jishi, Mohammad Nasreddine, Jamal Charara, Alexandre Surget, Ayache Bouakaz

FENS Forum 2024

ePoster

Fused Fiber Photometry 2.0: A flexible and versatile system for multi-color fiber photometry and optogenetic manipulation

Alexander Dieter, Andrey Formozov, J. Simon Wiegert

FENS Forum 2024

ePoster

Integrated electrophysiology and fiber photometry examination of the prefrontal cortex in the mouse model of implicit learning

Éva Gulyás, Vivien Pillár, Bálint Király, Franciska Benyó, Annamária Benke, Balázs Hangya

FENS Forum 2024

ePoster

Label-free biomolecular spectroscopy with vibrational fiber photometry deep in the mouse brain

Filippo Pisano, Mariam Masmudi-Martìn, Maria Samuela Andriani, Elena Cid, Marco Pisanello, Antonio Balena, Liam Collard, Teresa Jurado Parras, Marco Bianco, Mohammadrahim Kazemzadeh, Patricia Baena, Francesco Tantussi, Marco Grande, Leonardo Sileo, Francesco Gentile, Francesco De Angelis, Massimo De Vittorio, Liset Menendez de la Prida, Manuel Valiente, Ferruccio Pisanello

FENS Forum 2024

ePoster

Waveform sampling-based fluorescence lifetime fiber photometry (FLiP) measurements

Emir Karamehmedovic

FENS Forum 2024