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Information Processing

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information processing

Discover seminars, jobs, and research tagged with information processing across World Wide.
65 curated items60 Seminars4 ePosters1 Position
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65 items · information processing
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SeminarNeuroscience

What it’s like is all there is: The value of Consciousness

Axel Cleeremans
Université Libre de Bruxelles
Mar 6, 2025

Over the past thirty years or so, cognitive neuroscience has made spectacular progress understanding the biological mechanisms of consciousness. Consciousness science, as this field is now sometimes called, was not only inexistent thirty years ago, but its very name seemed like an oxymoron: how can there be a science of consciousness? And yet, despite this scepticism, we are now equipped with a rich set of sophisticated behavioural paradigms, with an impressive array of techniques making it possible to see the brain in action, and with an ever-growing collection of theories and speculations about the putative biological mechanisms through which information processing becomes conscious. This is all good and fine, even promising, but we also seem to have thrown the baby out with the bathwater, or at least to have forgotten it in the crib: consciousness is not just mechanisms, it’s what it feels like. In other words, while we know thousands of informative studies about access-consciousness, we have little in the way of phenomenal consciousness. But that — what it feels like — is truly what “consciousness” is about. Understanding why it feels like something to be me and nothing (panpsychists notwithstanding) for a stone to be a stone is what the field has always been after. However, while it is relatively easy to study access-consciousness through the contrastive approach applied to reports, it is much less clear how to study phenomenology, its structure and its function. Here, I first overview work on what consciousness does (the "how"). Next, I ask what difference feeling things makes and what function phenomenology might play. I argue that subjective experience has intrinsic value and plays a functional role in everything that we do.

SeminarNeuroscienceRecording

Brain network communication: concepts, models and applications

Caio Seguin
Indiana University
Aug 23, 2023

Understanding communication and information processing in nervous systems is a central goal of neuroscience. Over the past two decades, advances in connectomics and network neuroscience have opened new avenues for investigating polysynaptic communication in complex brain networks. Recent work has brought into question the mainstay assumption that connectome signalling occurs exclusively via shortest paths, resulting in a sprawling constellation of alternative network communication models. This Review surveys the latest developments in models of brain network communication. We begin by drawing a conceptual link between the mathematics of graph theory and biological aspects of neural signalling such as transmission delays and metabolic cost. We organize key network communication models and measures into a taxonomy, aimed at helping researchers navigate the growing number of concepts and methods in the literature. The taxonomy highlights the pros, cons and interpretations of different conceptualizations of connectome signalling. We showcase the utility of network communication models as a flexible, interpretable and tractable framework to study brain function by reviewing prominent applications in basic, cognitive and clinical neurosciences. Finally, we provide recommendations to guide the future development, application and validation of network communication models.

SeminarNeuroscience

The balanced brain: two-photon microscopy of inhibitory synapse formation

Corette Wierenga
Donders Institute
May 10, 2023

Coordination between excitatory and inhibitory synapses (providing positive and negative signals respectively) is required to ensure proper information processing in the brain. Many brain disorders, especially neurodevelopental disorders, are rooted in a specific disturbance of this coordination. In my research group we use a combination of two-photon microscopy and electrophisiology to examine how inhibitory synapses are fromed and how this formation is coordinated with nearby excitatroy synapses.

SeminarNeuroscience

Quasicriticality and the quest for a framework of neuronal dynamics

Leandro Jonathan Fosque
Beggs lab, IU Bloomington
May 2, 2023

Critical phenomena abound in nature, from forest fires and earthquakes to avalanches in sand and neuronal activity. Since the 2003 publication by Beggs & Plenz on neuronal avalanches, a growing body of work suggests that the brain homeostatically regulates itself to operate near a critical point where information processing is optimal. At this critical point, incoming activity is neither amplified (supercritical) nor damped (subcritical), but approximately preserved as it passes through neural networks. Departures from the critical point have been associated with conditions of poor neurological health like epilepsy, Alzheimer's disease, and depression. One complication that arises from this picture is that the critical point assumes no external input. But, biological neural networks are constantly bombarded by external input. How is then the brain able to homeostatically adapt near the critical point? We’ll see that the theory of quasicriticality, an organizing principle for brain dynamics, can account for this paradoxical situation. As external stimuli drive the cortex, quasicriticality predicts a departure from criticality while maintaining optimal properties for information transmission. We’ll see that simulations and experimental data confirm these predictions and describe new ones that could be tested soon. More importantly, we will see how this organizing principle could help in the search for biomarkers that could soon be tested in clinical studies.

SeminarNeuroscienceRecording

Signatures of criticality in efficient coding networks

Shervin Safavi
Dayan lab, MPI for Biological Cybernetics
May 2, 2023

The critical brain hypothesis states that the brain can benefit from operating close to a second-order phase transition. While it has been shown that several computational aspects of sensory information processing (e.g., sensitivity to input) are optimal in this regime, it is still unclear whether these computational benefits of criticality can be leveraged by neural systems performing behaviorally relevant computations. To address this question, we investigate signatures of criticality in networks optimized to perform efficient encoding. We consider a network of leaky integrate-and-fire neurons with synaptic transmission delays and input noise. Previously, it was shown that the performance of such networks varies non-monotonically with the noise amplitude. Interestingly, we find that in the vicinity of the optimal noise level for efficient coding, the network dynamics exhibits signatures of criticality, namely, the distribution of avalanche sizes follows a power law. When the noise amplitude is too low or too high for efficient coding, the network appears either super-critical or sub-critical, respectively. This result suggests that two influential, and previously disparate theories of neural processing optimization—efficient coding, and criticality—may be intimately related

SeminarNeuroscience

Precise spatio-temporal spike patterns in cortex and model

Sonia Gruen
Forschungszentrum Jülich, Germany
Apr 25, 2023

The cell assembly hypothesis postulates that groups of coordinated neurons form the basis of information processing. Here, we test this hypothesis by analyzing massively parallel spiking activity recorded in monkey motor cortex during a reach-to-grasp experiment for the presence of significant ms-precise spatio-temporal spike patterns (STPs). For this purpose, the parallel spike trains were analyzed for STPs by the SPADE method (Stella et al, 2019, Biosystems), which detects, counts and evaluates spike patterns for their significance by the use of surrogates (Stella et al, 2022 eNeuro). As a result we find STPs in 19/20 data sets (each of 15min) from two monkeys, but only a small fraction of the recorded neurons are involved in STPs. To consider the different behavioral states during the task, we analyzed the data in a quasi time-resolved analysis by dividing the data into behaviorally relevant time epochs. The STPs that occur in the various epochs are specific to behavioral context - in terms of neurons involved and temporal lags between the spikes of the STP. Furthermore we find, that the STPs often share individual neurons across epochs. Since we interprete the occurrence of a particular STP as the signature of a particular active cell assembly, our interpretation is that the neurons multiplex their cell assembly membership. In a related study, we model these findings by networks with embedded synfire chains (Kleinjohann et al, 2022, bioRxiv 2022.08.02.502431).

SeminarNeuroscience

Spatially-embedded recurrent neural networks reveal widespread links between structural and functional neuroscience findings

Jascha Achterberg
University of Cambridge
Jan 31, 2023

Brain networks exist within the confines of resource limitations. As a result, a brain network must overcome metabolic costs of growing and sustaining the network within its physical space, while simultaneously implementing its required information processing. To observe the effect of these processes, we introduce the spatially-embedded recurrent neural network (seRNN). seRNNs learn basic task-related inferences while existing within a 3D Euclidean space, where the communication of constituent neurons is constrained by a sparse connectome. We find that seRNNs, similar to primate cerebral cortices, naturally converge on solving inferences using modular small-world networks, in which functionally similar units spatially configure themselves to utilize an energetically-efficient mixed-selective code. As all these features emerge in unison, seRNNs reveal how many common structural and functional brain motifs are strongly intertwined and can be attributed to basic biological optimization processes. seRNNs can serve as model systems to bridge between structural and functional research communities to move neuroscientific understanding forward.

SeminarNeuroscience

Real-world scene perception and search from foveal to peripheral vision

Antje Nuthmann
Kiel University
Oct 23, 2022

A high-resolution central fovea is a prominent design feature of human vision. But how important is the fovea for information processing and gaze guidance in everyday visual-cognitive tasks? Following on from classic findings for sentence reading, I will present key results from a series of eye-tracking experiments in which observers had to search for a target object within static or dynamic images of real-world scenes. Gaze-contingent scotomas were used to selectively deny information processing in the fovea, parafovea, or periphery. Overall, the results suggest that foveal vision is less important and peripheral vision is more important for scene perception and search than previously thought. The importance of foveal vision was found to depend on the specific requirements of the task. Moreover, the data support a central-peripheral dichotomy in which peripheral vision selects and central vision recognizes.

SeminarPsychology

The role of top-down mechanisms in gaze perception

Nicolas Burra
University of Geneva
Jun 26, 2022

Humans, as a social species, have an increased ability to detect and perceive visual elements involved in social exchanges, such as faces and eyes. The gaze, in particular, conveys information crucial for social interactions and social cognition. Researchers have hypothesized that in order to engage in dynamic face-to-face communication in real time, our brains must quickly and automatically process the direction of another person's gaze. There is evidence that direct gaze improves face encoding and attention capture and that direct gaze is perceived and processed more quickly than averted gaze. These results are summarized as the "direct gaze effect". However, in the recent literature, there is evidence to suggest that the mode of visual information processing modulates the direct gaze effect. In this presentation, I argue that top-down processing, and specifically the relevance of eye features to the task, promotes the early preferential processing of direct versus indirect gaze. On the basis of several recent evidences, I propose that low task relevance of eye features will prevent differences in eye direction processing between gaze directions because its encoding will be superficial. Differential processing of direct and indirect gaze will only occur when the eyes are relevant to the task. To assess the implication of task relevance on the temporality of cognitive processing, we will measure event-related potentials (ERPs) in response to facial stimuli. In this project, instead of typical ERP markers such as P1, N170 or P300, we will measure lateralized ERPs (lERPS) such as lateralized N170 and N2pc, which are markers of early face encoding and attentional deployment respectively. I hypothesize that the relevance of the eye feature task is crucial in the direct gaze effect and propose to revisit previous studies, which had questioned the existence of the direct gaze effect. This claim will be illustrate with different past studies and recent preliminary data of my lab. Overall, I propose a systematic evaluation of the role of top-down processing in early direct gaze perception in order to understand the impact of context on gaze perception and, at a larger scope, on social cognition.

SeminarNeuroscience

Molecular Logic of Synapse Organization and Plasticity

Tabrez Siddiqui
University of Manitoba
May 30, 2022

Connections between nerve cells called synapses are the fundamental units of communication and information processing in the brain. The accurate wiring of neurons through synapses into neural networks or circuits is essential for brain organization. Neuronal networks are sculpted and refined throughout life by constant adjustment of the strength of synaptic communication by neuronal activity, a process known as synaptic plasticity. Deficits in the development or plasticity of synapses underlie various neuropsychiatric disorders, including autism, schizophrenia and intellectual disability. The Siddiqui lab research program comprises three major themes. One, to assess how biochemical switches control the activity of synapse organizing proteins, how these switches act through their binding partners and how these processes are regulated to correct impaired synaptic function in disease. Two, to investigate how synapse organizers regulate the specificity of neuronal circuit development and how defined circuits contribute to cognition and behaviour. Three, to address how synapses are formed in the developing brain and maintained in the mature brain and how microcircuits formed by synapses are refined to fine-tune information processing in the brain. Together, these studies have generated fundamental new knowledge about neuronal circuit development and plasticity and enabled us to identify targets for therapeutic intervention.

SeminarNeuroscienceRecording

Turning spikes to space: The storage capacity of tempotrons with plastic synaptic dynamics

Robert Guetig
Charité – Universitätsmedizin Berlin & BIH
Mar 8, 2022

Neurons in the brain communicate through action potentials (spikes) that are transmitted through chemical synapses. Throughout the last decades, the question how networks of spiking neurons represent and process information has remained an important challenge. Some progress has resulted from a recent family of supervised learning rules (tempotrons) for models of spiking neurons. However, these studies have viewed synaptic transmission as static and characterized synaptic efficacies as scalar quantities that change only on slow time scales of learning across trials but remain fixed on the fast time scales of information processing within a trial. By contrast, signal transduction at chemical synapses in the brain results from complex molecular interactions between multiple biochemical processes whose dynamics result in substantial short-term plasticity of most connections. Here we study the computational capabilities of spiking neurons whose synapses are dynamic and plastic, such that each individual synapse can learn its own dynamics. We derive tempotron learning rules for current-based leaky-integrate-and-fire neurons with different types of dynamic synapses. Introducing ordinal synapses whose efficacies depend only on the order of input spikes, we establish an upper capacity bound for spiking neurons with dynamic synapses. We compare this bound to independent synapses, static synapses and to the well established phenomenological Tsodyks-Markram model. We show that synaptic dynamics in principle allow the storage capacity of spiking neurons to scale with the number of input spikes and that this increase in capacity can be traded for greater robustness to input noise, such as spike time jitter. Our work highlights the feasibility of a novel computational paradigm for spiking neural circuits with plastic synaptic dynamics: Rather than being determined by the fixed number of afferents, the dimensionality of a neuron's decision space can be scaled flexibly through the number of input spikes emitted by its input layer.

SeminarNeuroscience

Cognitive Maps

Kauê M. Costa
National Institute on Drug Abuse
Mar 2, 2022

Ample evidence suggests that the brain generates internal simulations of the outside world to guide our thoughts and actions. These mental representations, or cognitive maps, are thought to be essential for our very comprehension of reality. I will discuss what is known about the informational structure of cognitive maps, their neural underpinnings, and how they relate to behavior, evolution, disease, and the current revolution in artificial intelligence.

SeminarNeuroscienceRecording

Cross-modality imaging of the neural systems that support executive functions

Yaara Erez
Affiliate MRC Cognition and Brain Sciences Unit, University of Cambridge
Feb 28, 2022

Executive functions refer to a collection of mental processes such as attention, planning and problem solving, supported by a frontoparietal distributed brain network. These functions are essential for everyday life. Specifically in the context of patients with brain tumours there is a need to preserve them in order to enable good quality of life for patients. During surgeries for the removal of a brain tumour, the aim is to remove as much as possible of the tumour and at the same time prevent damage to the areas around it to preserve function and enable good quality of life for patients. In many cases, functional mapping is conducted during an awake surgery in order to identify areas critical for certain functions and avoid their surgical resection. While mapping is routinely done for functions such as movement and language, mapping executive functions is more challenging. Despite growing recognition in the importance of these functions for patient well-being in recent years, only a handful of studies addressed their intraoperative mapping. In the talk, I will present our new approach for mapping executive function areas using electrocorticography during awake brain surgery. These results will be complemented by neuroimaging data from healthy volunteers, directed at reliably localizing executive function regions in individuals using fMRI. I will also discuss more broadly challenges ofß using neuroimaging for neurosurgical applications. We aim to advance cross-modality neuroimaging of cognitive function which is pivotal to patient-tailored surgical interventions, and will ultimately lead to improved clinical outcomes.

SeminarNeuroscienceRecording

How does the metabolically-expensive mammalian brain adapt to food scarcity?

Zahid Padamsey
Rochefort lab, University of Edinburgh
Feb 22, 2022

Information processing is energetically expensive. In the mammalian brain, it is unclear how information coding and energy usage are regulated during food scarcity. I addressed this in the visual cortex of awake mice using whole-cell recordings and two-photon imaging to monitor layer 2/3 neuronal activity and ATP usage. I found that food restriction reduced synaptic ATP usage by 29% through a decrease in AMPA receptor conductance. Neuronal excitability was nonetheless preserved by a compensatory increase in input resistance and a depolarized resting membrane potential. Consequently, neurons spiked at similar rates as controls, but spent less ATP on underlying excitatory currents. This energy-saving strategy had a cost since it amplified the variability of visually-evoked subthreshold responses, leading to a 32% broadening in orientation tuning and impaired fine visual discrimination. This reduction in coding precision was associated with reduced levels of the fat mass-regulated hormone leptin and was restored by exogenous leptin supplementation. These findings reveal novel mechanisms that dynamically regulate energy usage and coding precision in neocortex.

SeminarNeuroscience

Input and target-selective plasticity in sensory neocortex during learning

Alison Barth
Carnegie Mellon University
Jan 23, 2022

Behavioral experience shapes neural circuits, adding and subtracting connections between neurons that will ultimately control sensation and perception. We are using natural sensory experience to uncover basic principles of information processing in the cerebral cortex, with a focus on how sensory learning can selectively alter synaptic strength. I will discuss recent findings that differentiate reinforcement learning from sensory experience, showing rapid and selective plasticity of thalamic and inhibitory synapses within primary sensory cortex.

SeminarNeuroscienceRecording

A Flash of Darkness within Dusk: Crossover inhibition in the mouse retina

Henrique Von Gersdorff
OHSU
Jan 17, 2022

To survive in the wild small rodents evolved specialized retinas. To escape predators, looming shadows need to be detected with speed and precision. To evade starvation, small seeds, grass, nuts and insects need to also be detected quickly. Some of these succulent seeds and insects may be camouflaged offering only low contrast targets.Moreover, these challenging tasks need to be accomplished continuously at dusk, night, dawn and daytime. Crossover inhibition is thought to be involved in enhancing contrast detectionin the microcircuits of the inner plexiform layer of the mammalian retina. The AII amacrine cells are narrow field cells that play a key role in crossover inhibition. Our lab studies the synaptic physiology that regulates glycine release from AII amacrine cellsin mouse retina. These interneurons receive excitation from rod and conebipolar cells and transmit excitation to ON-type bipolar cell terminals via gap junctions. They also transmit inhibition via multiple glycinergic synapses onto OFF bipolar cell terminals.AII amacrine cells are thus a central hub of synaptic information processing that cross links the ON and the OFF pathways. What are the functions of crossover inhibition? How does it enhance contrast detection at different ambient light levels? How is the dynamicrange, frequency response and synaptic gain of glycine release modulated by luminance levels and circadian rhythms? How is synaptic gain changed by different extracellular neuromodulators, like dopamine, and by intracellular messengers like cAMP, phosphateand Ca2+ ions from Ca2+ channels and Ca2+ stores? My talk will try to answer some of these questions and will pose additional ones. It will end with further hypothesis and speculations on the multiple roles of crossover inhibition.

SeminarNeuroscienceRecording

Suboptimal human inference inverts the bias-variance trade-off for decisions with asymmetric evidence

Tahra Eissa
University of Colorado Boulder
Nov 30, 2021

Solutions to challenging inference problems are often subject to a fundamental trade-off between bias (being systematically wrong) that is minimized with complex inference strategies and variance (being oversensitive to uncertain observations) that is minimized with simple inference strategies. However, this trade-off is based on the assumption that the strategies being considered are optimal for their given complexity and thus has unclear relevance to the frequently suboptimal inference strategies used by humans. We examined inference problems involving rare, asymmetrically available evidence, which a large population of human subjects solved using a diverse set of strategies that were suboptimal relative to the Bayesian ideal observer. These suboptimal strategies reflected an inversion of the classic bias-variance trade-off: subjects who used more complex, but imperfect, Bayesian-like strategies tended to have lower variance but high bias because of incorrect tuning to latent task features, whereas subjects who used simpler heuristic strategies tended to have higher variance because they operated more directly on the observed samples but displayed weaker, near-normative bias. Our results yield new insights into the principles that govern individual differences in behavior that depends on rare-event inference, and, more generally, about the information-processing trade-offs that are sensitive to not just the complexity, but also the optimality of the inference process.

SeminarNeuroscienceRecording

Migraine: a disorder of excitatory-inhibitory balance in multiple brain networks? Insights from genetic mouse models of the disease

Daniela Pietrobon
Department of Biomedical Sciences and Padova Neuroscience Center, University of Padova, Italy
Oct 27, 2021

Migraine is much more than an episodic headache. It is a complex brain disorder, characterized by a global dysfunction in multisensory information processing and integration. In a third of patients, the headache is preceded by transient sensory disturbances (aura), whose neurophysiological correlate is cortical spreading depression (CSD). The molecular, cellular and circuit mechanisms of the primary brain dysfunctions that underlie migraine onset, susceptibility to CSD and altered sensory processing remain largely unknown and are major open issues in the neurobiology of migraine. Genetic mouse models of a rare monogenic form of migraine with aura provide a unique experimental system to tackle these key unanswered questions. I will describe the functional alterations we have uncovered in the cerebral cortex of genetic mouse models and discuss the insights into the cellular and circuit mechanisms of migraine obtained from these findings.

SeminarNeuroscience

Demystifying the richness of visual perception

Ruth Rosenholtz
MIT
Oct 19, 2021

Human vision is full of puzzles. Observers can grasp the essence of a scene in an instant, yet when probed for details they are at a loss. People have trouble finding their keys, yet they may be quite visible once found. How does one explain this combination of marvelous successes with quirky failures? I will describe our attempts to develop a unifying theory that brings a satisfying order to multiple phenomena. One key is to understand peripheral vision. A visual system cannot process everything with full fidelity, and therefore must lose some information. Peripheral vision must condense a mass of information into a succinct representation that nonetheless carries the information needed for vision at a glance. We have proposed that the visual system deals with limited capacity in part by representing its input in terms of a rich set of local image statistics, where the local regions grow — and the representation becomes less precise — with distance from fixation. This scheme trades off computation of sophisticated image features at the expense of spatial localization of those features. What are the implications of such an encoding scheme? Critical to our understanding has been the use of methodologies for visualizing the equivalence classes of the model. These visualizations allow one to quickly see that many of the puzzles of human vision may arise from a single encoding mechanism. They have suggested new experiments and predicted unexpected phenomena. Furthermore, visualization of the equivalence classes has facilitated the generation of testable model predictions, allowing us to study the effects of this relatively low-level encoding on a wide range of higher-level tasks. Peripheral vision helps explain many of the puzzles of vision, but some remain. By examining the phenomena that cannot be explained by peripheral vision, we gain insight into the nature of additional capacity limits in vision. In particular, I will suggest that decision processes face general-purpose limits on the complexity of the tasks they can perform at a given time.

SeminarNeuroscienceRecording

Tuning dumb neurons to task processing - via homeostasis

Viola Priesemann
Max Planck Institute for Dynamics and Self-organization
Oct 7, 2021

Homeostatic plasticity plays a key role in stabilizing neural network activity. But what is its role in neural information processing? We showed analytically how homeostasis changes collective dynamics and consequently information flow - depending on the input to the network. We then studied how input and homeostasis on a recurrent network of LIF neurons impacts information flow and task performance. We showed how we can tune the working point of the network, and found that, contrary to previous assumptions, there is not one optimal working point for a family of tasks, but each task may require its own working point.

SeminarNeuroscienceRecording

Neural dynamics of probabilistic information processing in humans and recurrent neural networks

Nuttida Rungratsameetaweemana
Sejnowski lab, The Salk Institute
Oct 5, 2021

In nature, sensory inputs are often highly structured, and statistical regularities of these signals can be extracted to form expectation about future sensorimotor associations, thereby optimizing behavior. One of the fundamental questions in neuroscience concerns the neural computations that underlie these probabilistic sensorimotor processing. Through a recurrent neural network (RNN) model and human psychophysics and electroencephalography (EEG), the present study investigates circuit mechanisms for processing probabilistic structures of sensory signals to guide behavior. We first constructed and trained a biophysically constrained RNN model to perform a series of probabilistic decision-making tasks similar to paradigms designed for humans. Specifically, the training environment was probabilistic such that one stimulus was more probable than the others. We show that both humans and the RNN model successfully extract information about stimulus probability and integrate this knowledge into their decisions and task strategy in a new environment. Specifically, performance of both humans and the RNN model varied with the degree to which the stimulus probability of the new environment matched the formed expectation. In both cases, this expectation effect was more prominent when the strength of sensory evidence was low, suggesting that like humans, our RNNs placed more emphasis on prior expectation (top-down signals) when the available sensory information (bottom-up signals) was limited, thereby optimizing task performance. Finally, by dissecting the trained RNN model, we demonstrate how competitive inhibition and recurrent excitation form the basis for neural circuitry optimized to perform probabilistic information processing.

SeminarNeuroscienceRecording

Neocortex saves energy by reducing coding precision during food scarcity

Nathalie Rochefort
University of Edinburgh
Sep 26, 2021

Information processing is energetically expensive. In the mammalian brain, it is unclear how information coding and energy usage are regulated during food scarcity. We addressed this in the visual cortex of awake mice using whole-cell patch clamp recordings and two-photon imaging to monitor layer 2/3 neuronal activity and ATP usage. We found that food restriction resulted in energy savings through a decrease in AMPA receptor conductance, reducing synaptic ATP usage by 29%. Neuronal excitability was nonetheless preserved by a compensatory increase in input resistance and a depolarized resting membrane potential. Consequently, neurons spiked at similar rates as controls, but spent less ATP on underlying excitatory currents. This energy-saving strategy had a cost since it amplified the variability of visually-evoked subthreshold responses, leading to a 32% broadening in orientation tuning and impaired fine visual discrimination. These findings reveal novel mechanisms that dynamically regulate energy usage and coding precision in neocortex.

SeminarNeuroscienceRecording

Information Dynamics in the Hippocampus and Cortex and their alterations in epilepsy

Wesley Clawson
Tufts University
Sep 15, 2021

Neurological disorders share common high-level alterations, such as cognitive deficits, anxiety, and depression. This raises the possibility of fundamental alterations in the way information conveyed by neural firing is maintained and dispatched in the diseased brain. Using experimental epilepsy as a model of neurological disorder we tested the hypothesis of altered information processing, analyzing how neurons in the hippocampus and the entorhinal cortex store and exchange information during slow and theta oscillations. We equate the storage and sharing of information to low level, or primitive, information processing at the algorithmic level, the theoretical intermediate level between structure and function. We find that these low-level processes are organized into substates during brain states marked by theta and slow oscillations. Their internal composition and organization through time are disrupted in epilepsy, losing brain state-specificity, and shifting towards a regime of disorder in a brain region dependent manner. We propose that the alteration of information processing at an algorithmic level may be a mechanism behind the emergent and widespread co-morbidities associated with epilepsy, and perhaps other disorders.

SeminarNeuroscienceRecording

Interpreting the Mechanisms and Meaning of Sensorimotor Beta Rhythms with the Human Neocortical Neurosolver (HNN) Neural Modeling Software

Stephanie Jones
Brown University
Sep 7, 2021

Electro- and magneto-encephalography (EEG/MEG) are the leading methods to non-invasively record human neural dynamics with millisecond temporal resolution. However, it can be extremely difficult to infer the underlying cellular and circuit level origins of these macro-scale signals without simultaneous invasive recordings. This limits the translation of E/MEG into novel principles of information processing, or into new treatment modalities for neural pathologies. To address this need, we developed the Human Neocortical Neurosolver (HNN: https://hnn.brown/edu ), a new user-friendly neural modeling tool designed to help researchers and clinicians interpret human imaging data. A unique feature of HNN’s model is that it accounts for the biophysics generating the primary electric currents underlying such data, so simulation results are directly comparable to source localized data. HNN is being constructed with workflows of use to study some of the most commonly measured E/MEG signals including event related potentials, and low frequency brain rhythms. In this talk, I will give an overview of this new tool and describe an application to study the origin and meaning of 15-29Hz beta frequency oscillations, known to be important for sensory and motor function. Our data showed that in primary somatosensory cortex these oscillations emerge as transient high power ‘events’. Functionally relevant differences in averaged power reflected a difference in the number of high-power beta events per trial (“rate”), as opposed to changes in event amplitude or duration. These findings were consistent across detection and attention tasks in human MEG, and in local field potentials from mice performing a detection task. HNN modeling led to a new theory on the circuit origin of such beta events and suggested beta causally impacts perception through layer specific recruitment of cortical inhibition, with support from invasive recordings in animal models and high-resolution MEG in humans. In total, HNN provides an unpresented biophysically principled tool to link mechanism to meaning of human E/MEG signals.

SeminarNeuroscience

Integration of „environmental“ information in the neuronal epigenome

Geraldine Zimmer-Bensch
Functional Epigenetics in the Animal Model, Institute of Biology II, RWTH Aachen, Aachen, Germany
Aug 24, 2021

The inhibitory actions of the heterogeneous collection of GABAergic interneurons tremendously influence cortical information processing, which is reflected by diseases like autism, epilepsy and schizophrenia that involve defects in cortical inhibition. Apart from the regulation of physiological processes like synaptic transmission, proper interneuron function also relies on their correct development. Hence, decrypting regulatory networks that direct proper cortical interneuron development as well as adult functionality is of great interest, as this helps to identify critical events implicated in the etiology of the aforementioned diseases. Thereby, extrinsic factors modulate these processes and act on cell- and stage-specific transcriptional programs. Herein, epigenetic mechanisms of gene regulation, like DNA methylation executed by DNA methyltransferases (DNMTs), histone modifications and non-coding RNAs, call increasing attention in integrating “environmental information” in our genome and sculpting physiological processes in the brain relevant for human mental health. Several studies associate altered expression levels and function of the DNA methyltransferase 1 (DNMT1) in subsets of embryonic and adult cortical interneurons in patients diagnosed with schizophrenia. Although accumulating evidence supports the relevance of epigenetic signatures for instructing cell type-specific development, only very little is known about their functional implications in discrete developmental processes and in subtype-specific maturation of cortical interneurons. Similarly, little is known about the role of DNMT1 in regulating adult interneurons functionality. This talk will provide an overview about newly identified and roles DNMT1 has in orchestrating cortical interneuron development and adult function. Further, this talk will report about the implications of lncRNAs in mediating site-specific DNA methylation in response to discrete external stimuli.

SeminarPsychology

Categories, language, and visual working memory: how verbal labels change capacity limitations

Alessandra S. Souza
University of Porto, University of Zurich
Aug 10, 2021

The limited capacity of visual working memory constrains the quantity and quality of the information we can store in mind for ongoing processing. Research from our lab has demonstrated that verbal labeling/categorization of visual inputs increases its retention and fidelity in visual working memory. In this talk, I will outline the hypotheses that explain the interaction between visual and verbal inputs in working memory, leading to the boosts we observed. I will further show how manipulations of the categorical distinctiveness of the labels, the timing of their occurrence, to which item labels are applied, as well as their validity modulate the benefits one can draw from combining visual and verbal inputs to alleviate capacity limitations. Finally, I will discuss the implications of these results to our understanding of working memory and its interaction with prior knowledge.

SeminarNeuroscience

Multi-scale synaptic analysis for psychiatric/emotional disorders

Akiko Hayashi-Takagi
RIKEN CBS
Jun 30, 2021

Dysregulation of emotional processing and its integration with cognitive functions are central features of many mental/emotional disorders associated both with externalizing problems (aggressive, antisocial behaviors) and internalizing problems (anxiety, depression). As Dr. Joseph LeDoux, our invited speaker of this program, wrote in his famous book “Synaptic self: How Our Brains Become Who We Are”—the brain’s synapses—are the channels through which we think, act, imagine, feel, and remember. Synapses encode the essence of personality, enabling each of us to function as a distinctive, integrated individual from moment to moment. Thus, exploring the functioning of synapses leads to the understanding of the mechanism of (patho)physiological function of our brain. In this context, we have investigated the pathophysiology of psychiatric disorders, with particular emphasis on the synaptic function of model mice of various psychiatric disorders such as schizophrenia, autism, depression, and PTSD. Our current interest is how synaptic inputs are integrated to generate the action potential. Because the spatiotemporal organization of neuronal firing is crucial for information processing, but how thousands of inputs to the dendritic spines drive the firing remains a central question in neuroscience. We identified a distinct pattern of synaptic integration in the disease-related models, in which extra-large (XL) spines generate NMDA spikes within these spines, which was sufficient to drive neuronal firing. We experimentally and theoretically observed that XL spines negatively correlated with working memory. Our work offers a whole new concept for dendritic computation and network dynamics, and the understanding of psychiatric research will be greatly reconsidered. The second half of my talk is the development of a novel synaptic tool. Because, no matter how beautifully we can illuminate the spine morphology and how accurately we can quantify the synaptic integration, the links between synapse and brain function remain correlational. In order to challenge the causal relationship between synapse and brain function, we established AS-PaRac1, which is unique not only because it can specifically label and manipulate the recently potentiated dendritic spine (Hayashi-Takagi et al, 2015, Nature). With use of AS-PaRac1, we developed an activity-dependent simultaneous labeling of the presynaptic bouton and the potentiated spines to establish “functional connectomics” in a synaptic resolution. When we apply this new imaging method for PTSD model mice, we identified a completely new functional neural circuit of brain region A→B→C with a very strong S/N in the PTSD model mice. This novel tool of “functional connectomics” and its photo-manipulation could open up new areas of emotional/psychiatric research, and by extension, shed light on the neural networks that determine who we are.

SeminarNeuroscience

Making memories in mice

Sheena Josselyn
The Hospital for Sick Children
Jun 30, 2021

Understanding how the brain uses information is a fundamental goal of neuroscience. Several human disorders (ranging from autism spectrum disorder to PTSD to Alzheimer’s disease) may stem from disrupted information processing. Therefore, this basic knowledge is not only critical for understanding normal brain function, but also vital for the development of new treatment strategies for these disorders. Memory may be defined as the retention over time of internal representations gained through experience, and the capacity to reconstruct these representations at later times. Long-lasting physical brain changes (‘engrams’) are thought to encode these internal representations. The concept of a physical memory trace likely originated in ancient Greece, although it wasn’t until 1904 that Richard Semon first coined the term ‘engram’. Despite its long history, finding a specific engram has been challenging, likely because an engram is encoded at multiple levels (epigenetic, synaptic, cell assembly). My lab is interested in understanding how specific neurons are recruited or allocated to an engram, and how neuronal membership in an engram may change over time or with new experience. Here I will describe both older and new unpublished data in our efforts to understand memories in mice.

SeminarNeuroscienceRecording

An in-silico framework to study the cholinergic modulation of the neocortex

Cristina Colangelo
EPFL, Blue Brain Project
Jun 29, 2021

Neuromodulators control information processing in cortical microcircuits by regulating the cellular and synaptic physiology of neurons. Computational models and detailed simulations of neocortical microcircuitry offer a unifying framework to analyze the role of neuromodulators on network activity. In the present study, to get a deeper insight in the organization of the cortical neuropil for modeling purposes, we quantify the fiber length per cortical volume and the density of varicosities for catecholaminergic, serotonergic and cholinergic systems using immunocytochemical staining and stereological techniques. The data obtained are integrated into a biologically detailed digital reconstruction of the rodent neocortex (Markram et al, 2015) in order to model the influence of modulatory systems on the activity of the somatosensory cortex neocortical column. Simulations of ascending modulation of network activity in our model predict the effects of increasing levels of neuromodulators on diverse neuron types and synapses and reveal a spectrum of activity states. Low levels of neuromodulation drive microcircuit activity into slow oscillations and network synchrony, whereas high neuromodulator concentrations govern fast oscillations and network asynchrony. The models and simulations thus provide a unifying in silico framework to study the role of neuromodulators in reconfiguring network activity.

SeminarNeuroscience

Low Dimensional Manifolds for Neural Dynamics

Sara A. Solla
Northwestern University
Jun 8, 2021

The ability to simultaneously record the activity from tens to thousands to tens of thousands of neurons has allowed us to analyze the computational role of population activity as opposed to single neuron activity. Recent work on a variety of cortical areas suggests that neural function may be built on the activation of population-wide activity patterns, the neural modes, rather than on the independent modulation of individual neural activity. These neural modes, the dominant covariation patterns within the neural population, define a low dimensional neural manifold that captures most of the variance in the recorded neural activity. We refer to the time-dependent activation of the neural modes as their latent dynamics. As an example, we focus on the ability to execute learned actions in a reliable and stable manner. We hypothesize that the ability to perform a given behavior in a consistent manner requires that the latent dynamics underlying the behavior also be stable. The stable latent dynamics, once identified, allows for the prediction of various behavioral features, using models whose parameters remain fixed throughout long timespans. We posit that latent cortical dynamics within the manifold are the fundamental and stable building blocks underlying consistent behavioral execution.

SeminarNeuroscience

Learning to perceive with new sensory signals

Marko Nardini
Durham University
May 18, 2021

I will begin by describing recent research taking a new, model-based approach to perceptual development. This approach uncovers fundamental changes in information processing underlying the protracted development of perception, action, and decision-making in childhood. For example, integration of multiple sensory estimates via reliability-weighted averaging – widely used by adults to improve perception – is often not seen until surprisingly late into childhood, as assessed by both behaviour and neural representations. This approach forms the basis for a newer question: the scope for the nervous system to deploy useful computations (e.g. reliability-weighted averaging) to optimise perception and action using newly-learned sensory signals provided by technology. Our initial model system is augmenting visual depth perception with devices translating distance into auditory or vibro-tactile signals. This problem has immediate applications to people with partial vision loss, but the broader question concerns our scope to use technology to tune in to any signal not available to our native biological receptors. I will describe initial progress on this problem, and our approach to operationalising what it might mean to adopt a new signal comparably to a native sense. This will include testing for its integration (weighted averaging) alongside the native senses, assessing the level at which this integration happens in the brain, and measuring the degree of ‘automaticity’ with which new signals are used, compared with native perception.

SeminarNeuroscience

Memory, learning to learn, and control of cognitive representations

André Fenton
New York University
May 6, 2021

Biological neural networks can represent information in the collective action potential discharge of neurons, and store that information amongst the synaptic connections between the neurons that both comprise the network and govern its function. The strength and organization of synaptic connections adjust during learning, but many cognitive neural systems are multifunctional, making it unclear how continuous activity alternates between the transient and discrete cognitive functions like encoding current information and recollecting past information, without changing the connections amongst the neurons. This lecture will first summarize our investigations of the molecular and biochemical mechanisms that change synaptic function to persistently store spatial memory in the rodent hippocampus. I will then report on how entorhinal cortex-hippocampus circuit function changes during cognitive training that creates memory, as well as learning to learn in mice. I will then describe how the hippocampus system operates like a competitive winner-take-all network, that, based on the dominance of its current inputs, self organizes into either the encoding or recollection information processing modes. We find no evidence that distinct cells are dedicated to those two distinct functions, rather activation of the hippocampus information processing mode is controlled by a subset of dentate spike events within the network of learning-modified, entorhinal-hippocampus excitatory and inhibitory synapses.

SeminarNeuroscienceRecording

Memory, learning to learn, and control of cognitive representations

André Fenton
New York University
May 6, 2021

Biological neural networks can represent information in the collective action potential discharge of neurons, and store that information amongst the synaptic connections between the neurons that both comprise the network and govern its function. The strength and organization of synaptic connections adjust during learning, but many cognitive neural systems are multifunctional, making it unclear how continuous activity alternates between the transient and discrete cognitive functions like encoding current information and recollecting past information, without changing the connections amongst the neurons. This lecture will first summarize our investigations of the molecular and biochemical mechanisms that change synaptic function to persistently store spatial memory in the rodent hippocampus. I will then report on how entorhinal cortex-hippocampus circuit function changes during cognitive training that creates memory, as well as learning to learn in mice. I will then describe how the hippocampus system operates like a competitive winner-take-all network, that, based on the dominance of its current inputs, self organizes into either the encoding or recollection information processing modes. We find no evidence that distinct cells are dedicated to those two distinct functions, rather activation of the hippocampus information processing mode is controlled by a subset of dentate spike events within the network of learning-modified, entorhinal-hippocampus excitatory and inhibitory synapses.

SeminarNeuroscienceRecording

The collective behavior of the clonal raider ant: computations, patterns, and naturalistic behavior

Asaf Gal
University of Rockefeller, NYC
May 4, 2021

Colonies of ants and other eusocial insects are superorganisms, which perform sophisticated cognitive-like functions at the level of the group. In my talk I will review our efforts to establish the clonal raider ant Ooceraea biroi as a lab model system for the systematic study of the principles underlying collective information processing in ant colonies. I will use results from two separate projects to demonstrate the potential of this model system: In the first, we analyze the foraging behavior of the species, known as group raiding: a swift offensive response of a colony to the detection of a potential prey by a scout. By using automated behavioral tracking and detailed analysis we show that this behavior is closely related to the army ant mass raid, an iconic collective behavior in which hundreds of thousands of ants spontaneously leave the nest to go hunting, and that the evolutionary transition between the two can be explained by a change in colony size alone. In the second project, we study the emergence of a collective sensory response threshold in a colony. The sensory threshold is a fundamental computational primitive, observed across many biological systems. By carefully controlling the sensory environment and the social structure of the colonies we were able to show that it also appear in a collective context, and that it emerges out of a balance between excitatory and inhibitory interactions between ants. Furthermore, by using a mathematical model we predict that these two interactions can be mapped into known mechanisms of communication in ants. Finally, I will discuss the opportunities for understanding collective behavior that are opening up by the development of methods for neuroimaging and neurocontrol of our ants.

SeminarNeuroscienceRecording

Inhibitory neural circuit mechanisms underlying neural coding of sensory information in the neocortex

Jeehyun Kwag
Korea University
Jan 28, 2021

Neural codes, such as temporal codes (precisely timed spikes) and rate codes (instantaneous spike firing rates), are believed to be used in encoding sensory information into spike trains of cortical neurons. Temporal and rate codes co-exist in the spike train and such multiplexed neural code-carrying spike trains have been shown to be spatially synchronized in multiple neurons across different cortical layers during sensory information processing. Inhibition is suggested to promote such synchronization, but it is unclear whether distinct subtypes of interneurons make different contributions in the synchronization of multiplexed neural codes. To test this, in vivo single-unit recordings from barrel cortex were combined with optogenetic manipulations to determine the contributions of parvalbumin (PV)- and somatostatin (SST)-positive interneurons to synchronization of precisely timed spike sequences. We found that PV interneurons preferentially promote the synchronization of spike times when instantaneous firing rates are low (<12 Hz), whereas SST interneurons preferentially promote the synchronization of spike times when instantaneous firing rates are high (>12 Hz). Furthermore, using a computational model, we demonstrate that these effects can be explained by PV and SST interneurons having preferential contribution to feedforward and feedback inhibition, respectively. Overall, these results show that PV and SST interneurons have distinct frequency (rate code)-selective roles in dynamically gating the synchronization of spike times (temporal code) through preferentially recruiting feedforward and feedback inhibitory circuit motifs. The inhibitory neural circuit mechanisms we uncovered here his may have critical roles in regulating neural code-based somatosensory information processing in the neocortex.

SeminarNeuroscience

The interaction of sensory and motor information to shape neuronal representations in mouse cortical networks

Janelle Pakan
DZNE Magdeburg
Dec 3, 2020

The neurons in our brain never function in isolation; they are organized into complex circuits which perform highly specialized information processing tasks and transfer information through large neuronal networks. The aim of Janelle Pakan's research group is to better understand how neural circuits function during the transformation of information from sensory perception to behavioural output. Importantly, they also aim to further understand the cell-type specific processes that interrupt the flow of information through neural circuits in neurodegenerative disorders with dementia. The Pakan group utilizes innovative neuroanatomical tracing techniques, advanced in vivo two-photon imaging, and genetically targeted manipulations of neuronal activity to investigate the cell-type specific microcircuitry of the cerebral cortex, the macrocircuitry of cortical output to subcortical structures, and the functional circuitry underlying processes of sensory perception and motor behaviour.

SeminarNeuroscience

Influence of cortical and neuromodulatory loops on sensory information processing and perception in the mouse olfactory system

Markus Rothermel
Dept. Chemosensation, RWTH Aachen University, Germany
Oct 11, 2020
SeminarNeuroscience

Dynamic regulation of information processing in thalamus

Patrik Krieger
Dept. Medicine, Ruhr-University, Bochum, Germany
Oct 4, 2020
SeminarPhysics of LifeRecording

Following the energy in cellular information processing

Jeremy Gunawardena
Harvard University
Aug 2, 2020
SeminarNeuroscience

MidsummerBrains - computational neuroscience from my point of view

Christian Leibold
LMU Munich
Jul 21, 2020

Computational neuroscience is a highly interdisciplinary field ranging from mathematics, physics and engineering to biology, medicine and psychology. Interdisciplinary collaborations have resulted in many groundbreaking innovations both in the research and application. The basis for successful collaborations is the ability to communicate across disciplines: What projects are the others working on? Which techniques and methods are they using? How is data collected, used and stored? In this webinar series, several experts describe their view on computational neuroscience in theory and application, and share experiences they had with interdisciplinary projects. This webinar is open for all interested students and researchers. If you are interested to participate live, please send a short message to smartstart@fz-juelich.de Please note, these lectures will be recorded for subsequent publishing as online lecture material.

SeminarNeuroscience

Information and Decision-Making

Daniel Polani
University of Hertfordshire
Jul 19, 2020

In recent years it has become increasingly clear that (Shannon) information is a central resource for organisms, akin in importance to energy. Any decision that an organism or a subsystem of an organism takes involves the acquisition, selection, and processing of information and ultimately its concentration and enaction. It is the consequences of this balance that will occupy us in this talk. This perception-action loop picture of an agent's life cycle is well established and expounded especially in the context of Fuster's sensorimotor hierarchies. Nevertheless, the information-theoretic perspective drastically expands the potential and predictive power of the perception-action loop perspective. On the one hand information can be treated - to a significant extent - as a resource that is being sought and utilized by an organism. On the other hand, unlike energy, information is not additive. The intrinsic structure and dynamics of information can be exceedingly complex and subtle; in the last two decades one has discovered that Shannon information possesses a rich and nontrivial intrinsic structure that must be taken into account when informational contributions, information flow or causal interactions of processes are investigated, whether in the brain or in other complex processes. In addition, strong parallels between information and control theory have emerged. This parallelism between the theories allows one to obtain unexpected insights into the nature and properties of the perception-action loop. Through the lens of information theory, one can not only come up with novel hypotheses about necessary conditions for the organization of information processing in a brain, but also with constructive conjectures and predictions about what behaviours, brain structure and dynamics and even evolutionary pressures one can expect to operate on biological organisms, induced purely by informational considerations.

SeminarNeuroscienceRecording

MidsummerBrains - computational neuroscience from my point of view

Julijana Gjorgjieva
MPI brain research
Jul 14, 2020

Computational neuroscience is a highly interdisciplinary field ranging from mathematics, physics and engineering to biology, medicine and psychology. Interdisciplinary collaborations have resulted in many groundbreaking innovations both in the research and application. The basis for successful collaborations is the ability to communicate across disciplines: What projects are the others working on? Which techniques and methods are they using? How is data collected, used and stored? In this webinar series, several experts describe their view on computational neuroscience in theory and application, and share experiences they had with interdisciplinary projects. This webinar is open for all interested students and researchers. If you are interested to participate live, please send a short message to smartstart@fz-juelich.de Please note, these lectures will be recorded for subsequent publishing as online lecture material.

SeminarNeuroscienceRecording

MidsummerBrains - computational neuroscience from my point of view

Katharina Wilmes
University of Bern
Jul 7, 2020

Computational neuroscience is a highly interdisciplinary field ranging from mathematics, physics and engineering to biology, medicine and psychology. Interdisciplinary collaborations have resulted in many groundbreaking innovations both in the research and application. The basis for successful collaborations is the ability to communicate across disciplines: What projects are the others working on? Which techniques and methods are they using? How is data collected, used and stored? In this webinar series, several experts describe their view on computational neuroscience in theory and application, and share experiences they had with interdisciplinary projects. This webinar is open for all interested students and researchers. If you are interested to participate live, please send a short message to smartstart@fz-juelich.de Please note, these lectures will be recorded for subsequent publishing as online lecture material.

SeminarNeuroscience

Synaptic, cellular, and circuit mechanisms for learning: insights from electric fish

Nate Sawtell
Columbia University
Jul 5, 2020

Understanding learning in neural circuits requires answering a number of difficult questions: (1) What is the computation being performed and what is its behavioral significance? (2) What are the inputs required for the computation and how are they represented at the level of spikes? (3) What are the sites and rules governing plasticity, i.e. how do pre and post-synaptic activity patterns produce persistent changes in synaptic strength? (4) How does network connectivity and dynamics shape the computation being performed? I will discuss joint experimental and theoretical work addressing these questions in the context of the electrosensory lobe (ELL) of weakly electric mormyrid fish.

SeminarNeuroscience

Networks thinking themselves

Danielle S. Bassett
University of Pennsylvania & the Santa Fe Institute
Jul 2, 2020

Human learners acquire not only disconnected bits of information, but complex interconnected networks of relational knowledge. The capacity for such learning naturally depends on the architecture of the knowledge network itself, and also on the architecture of the computational unit – the brain – that encodes and processes the information. Here, I will discuss emerging work assessing network constraints on the learnability of relational knowledge, and the neural correlates of that learning.

ePoster

A neural model for hierarchical and counterfactual information processing inspired by human behavior

Cheng Tang, Mahdi Ramadan, Mehrdad Jazayeri

COSYNE 2023

ePoster

Dissociation between sensory and goal-directed information processing in prefrontal, visual, and parietal cortices in non-human primates

Alexis Monnet-Aimard, Camila Losada, Guilhem Ibos

FENS Forum 2024

ePoster

Estimating the effect of NMDA receptors on network-level oscillations and information processing

Gabriele Mancini, Pablo Martínez-Cañada, Alessandro Toso, Tobias H. Donner, Stefano Panzeri

FENS Forum 2024

ePoster

Layers, Folds, and Semi-Neuronal Information Processing

Avery Lim

Neuromatch 5