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MEG

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60 curated items31 Seminars15 ePosters14 Positions
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60 items · MEG
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Position

Pascal Fries

Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society
Frankfurt, Germany
Dec 5, 2025

The Fries Lab at the Ernst Strüngmann Institute (ESI) in Frankfurt is looking for an enthusiastic postdoctoral project scientist, who is interested in developing novel approaches to human neurotherapy. Modern non-invasive and invasive electrophysiological techniques provide information about the state of the human brain with high bandwidth and temporal resolution. In addition, wearables assess many relevant physiological parameters. The project scientist will use those recordings to develop personalized neurofeedback-based approaches for neurotherapy. Initially, this will focus on healthy human subjects and non-invasive techniques (MEG and EEG). Subsequently, this can lead to the inclusion of diseased human subjects and invasive techniques (ECoG), in collaboration with clinical partners. The position is not a typical postdoctoral position, because its primary focus is on the development of therapeutic approaches. Yet another important focus will be the publication of the obtained scientific advances. The project scientist will join an existing international team with expertise in human and animal electrophysiology, and will be able to use an outstanding infrastructure. For details on the institute and the lab, see: https://www.esi-frankfurt.de/people/pascalfries/

Position

Alban Gallard

GRAMFC
Amiens, France
Dec 5, 2025

The brain activity of premature infants and fetuses is composed of periods of rest and bursts. These bursts can be measured using EEG for premature infants and MEG for fetuses. It has already been determined that the proportion of bursts changes with the gestational age of the child. The objective of the internship is to compare the bursts of activity between premature babies and fetuses by performing the following tasks: - Bibliographic analysis of bursts of EEG activity in premature babies and MEG in fetuses - Feature extraction of bursts and inter-bursts - Analysis and comparison of the characteristics obtained

Position

CRAIG JIN

University of Sydney, University of Technology Sydney, Westmead Hospital
The University of Sydney, NSW, 2006
Dec 5, 2025

Postdoctoral Research Associate in Fluent Mobility for Visual Impairment Using Auditory Augmentation: You will be working with a dynamic group of researchers at the University of Sydney, University of Technology Sydney and Westmead Hospital. We are exploring the use of non-verbal auditory grammar for spatial cognition and navigation.

Position

Susan Fischer

University of Tübingen, Max Planck Institute for Biological Cybernetics, Universitätsklinik für Psychiatrie und Psychotherapie
University of Tübingen, Germany
Dec 5, 2025

The 'Developmental Computational Psychiatry' lab and the W3 professorship 'Computational Psychiatry' led by Tobias Hauser at the University of Tübingen (Germany) is currently hiring new postdocs. The focus of the lab is to better understand the computational and neural mechanisms underlying decision making and learning, and how these processes go awry in patients with mental illnesses. The successful candidates will have the chance to work in a highly dynamic and inspiring environment and to collaborate closely with Prof Peter Dayan and the Max Planck Institute for Biological Cybernetics.

Position

Susan Fischer

University of Tübingen, Max Planck Institute for Biological Cybernetics, Universitätsklinik für Psychiatrie und Psychotherapie
Tübingen, Germany
Dec 5, 2025

The 'Developmental Computational Psychiatry' lab and the W3 professorship 'Computational Psychiatry' led by Tobias Hauser at the University of Tübingen is hiring new postdocs. The lab focuses on understanding the computational and neural mechanisms underlying decision making and learning, and how these processes are affected in patients with mental illnesses. Successful candidates will work in a dynamic environment and collaborate with Prof Peter Dayan and the Max-Planck Institute for Biological Cybernetics.

Position

Dr Florent MEYNIEL

Institute of NeuroModulation (INM), Sainte Anne Hospital, Paris, France; NeuroSpin, Paris-Saclay Campus, France
Paris, France
Dec 5, 2025

Learning and decision making are intertwined processes in many everyday situations. One example is when you decide where to have lunch: should you go to the nearby coffee shop or to the university cafeteria? Learning depends on choice, because you can learn which option you prefer by trying each option repeatedly, and decision making depends on learning, because you eventually want to select the option you have learned you like best. Uncertainty plays a key role in both learning and decision making, especially when the environment is not stationary. In the CEA-funded EXPLORE+ collaborative project, we are interested in characterizing the neural representation of uncertainty and value that emerge from learning and guide decisions. Our approach follows a deep phenotyping approach, attempting to characterize each subject with a large multimodal dataset. We collected data from 16 participants who participated in one behavioral session, two 7T fMRI sessions, and two MEG sessions. The large number of trials allows us to estimate and test different computational models of the decision and learning processes. The 7T MRI and MEG data provide access to the topographical organization of neural representations and their dynamics, respectively, to better understand learning and decision making. One postdoc is currently working on the fMRI data, and we are looking for another postdoc for the MEG dataset. Both postdocs will work together to perform analyses informed by both modalities. The EXPLORE+ project will continue with another previously funded project called BrainSync, which will collect data from 11.7 fMRI and intracranial recordings using the same task, providing an opportunity to extend the current work.

PositionComputational Neuroscience

Dr. Gunnar Blohm

Queen's University
Queen's University, Kingston, ON
Dec 5, 2025

I'm looking for postdocs who'd like to apply for the Connected Minds PDFs with me and collaborators to work on the following potential projects: 1. explainable neuroAI for ANN / SNN models of motor control 2. neuromorphic robotic control 3. neurorobotic artistic performance 4. whole brain motor control networks identified through MEG and inverse optimal control. More information about the 2-yr Connected Minds PDF application, including eligibility criteria can be found here: https://www.yorku.ca/research/connected-minds/postdoctoral-fellowships/. I will of course help assembling the advisory team, writing the research project description and provide general guidance for the application. Feel free to check out my lab's website <http://compneurosci.com/> and WIKI <http://compneurosci.com/wiki/index.php/Main_Page> to get a better sense of who we are and how we work...

Position

Virginie van Wassenhove

CEA
Gif sur Yvette
Dec 5, 2025

https://brainthemind.com/wp-content/uploads/2025/03/syg-postdoc-positions.pdf

SeminarNeuroscience

OpenNeuro FitLins GLM: An Accessible, Semi-Automated Pipeline for OpenNeuro Task fMRI Analysis

Michael Demidenko
Stanford University
Jul 31, 2025

In this talk, I will discuss the OpenNeuro Fitlins GLM package and provide an illustration of the analytic workflow. OpenNeuro FitLins GLM is a semi-automated pipeline that reduces barriers to analyzing task-based fMRI data from OpenNeuro's 600+ task datasets. Created for psychology, psychiatry and cognitive neuroscience researchers without extensive computational expertise, this tool automates what is largely a manual process and compilation of in-house scripts for data retrieval, validation, quality control, statistical modeling and reporting that, in some cases, may require weeks of effort. The workflow abides by open-science practices, enhancing reproducibility and incorporates community feedback for model improvement. The pipeline integrates BIDS-compliant datasets and fMRIPrep preprocessed derivatives, and dynamically creates BIDS Statistical Model specifications (with Fitlins) to perform common mass univariate [GLM] analyses. To enhance and standardize reporting, it generates comprehensive reports which includes design matrices, statistical maps and COBIDAS-aligned reporting that is fully reproducible from the model specifications and derivatives. OpenNeuro Fitlins GLM has been tested on over 30 datasets spanning 50+ unique fMRI tasks (e.g., working memory, social processing, emotion regulation, decision-making, motor paradigms), reducing analysis times from weeks to hours when using high-performance computers, thereby enabling researchers to conduct robust single-study, meta- and mega-analyses of task fMRI data with significantly improved accessibility, standardized reporting and reproducibility.

SeminarNeuroscience

Hippocampal Ripple Diversity and Neural Plasticity: Insights into Semantic Memory Formation

Lisa Genzel
Radboud University, Nijmegen
Dec 11, 2024
SeminarNeuroscience

LLMs and Human Language Processing

Maryia Toneva, Ariel Goldstein, Jean-Remi King
Max Planck Institute of Software Systems; Hebrew University; École Normale Supérieure
Nov 28, 2024

This webinar convened researchers at the intersection of Artificial Intelligence and Neuroscience to investigate how large language models (LLMs) can serve as valuable “model organisms” for understanding human language processing. Presenters showcased evidence that brain recordings (fMRI, MEG, ECoG) acquired while participants read or listened to unconstrained speech can be predicted by representations extracted from state-of-the-art text- and speech-based LLMs. In particular, text-based LLMs tend to align better with higher-level language regions, capturing more semantic aspects, while speech-based LLMs excel at explaining early auditory cortical responses. However, purely low-level features can drive part of these alignments, complicating interpretations. New methods, including perturbation analyses, highlight which linguistic variables matter for each cortical area and time scale. Further, “brain tuning” of LLMs—fine-tuning on measured neural signals—can improve semantic representations and downstream language tasks. Despite open questions about interpretability and exact neural mechanisms, these results demonstrate that LLMs provide a promising framework for probing the computations underlying human language comprehension and production at multiple spatiotemporal scales.

SeminarNeuroscience

Trends in NeuroAI - Meta's MEG-to-image reconstruction

Reese Kneeland
Jan 4, 2024

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). Title: Brain-optimized inference improves reconstructions of fMRI brain activity Abstract: The release of large datasets and developments in AI have led to dramatic improvements in decoding methods that reconstruct seen images from human brain activity. We evaluate the prospect of further improving recent decoding methods by optimizing for consistency between reconstructions and brain activity during inference. We sample seed reconstructions from a base decoding method, then iteratively refine these reconstructions using a brain-optimized encoding model that maps images to brain activity. At each iteration, we sample a small library of images from an image distribution (a diffusion model) conditioned on a seed reconstruction from the previous iteration. We select those that best approximate the measured brain activity when passed through our encoding model, and use these images for structural guidance during the generation of the small library in the next iteration. We reduce the stochasticity of the image distribution at each iteration, and stop when a criterion on the "width" of the image distribution is met. We show that when this process is applied to recent decoding methods, it outperforms the base decoding method as measured by human raters, a variety of image feature metrics, and alignment to brain activity. These results demonstrate that reconstruction quality can be significantly improved by explicitly aligning decoding distributions to brain activity distributions, even when the seed reconstruction is output from a state-of-the-art decoding algorithm. Interestingly, the rate of refinement varies systematically across visual cortex, with earlier visual areas generally converging more slowly and preferring narrower image distributions, relative to higher-level brain areas. Brain-optimized inference thus offers a succinct and novel method for improving reconstructions and exploring the diversity of representations across visual brain areas. Speaker: Reese Kneeland is a Ph.D. student at the University of Minnesota working in the Naselaris lab. Paper link: https://arxiv.org/abs/2312.07705

SeminarNeuroscience

Trends in NeuroAI - Meta's MEG-to-image reconstruction

Paul Scotti
Dec 6, 2023

Trends in NeuroAI is a reading group hosted by the MedARC Neuroimaging & AI lab (https://medarc.ai/fmri). This will be an informal journal club presentation, we do not have an author of the paper joining us. Title: Brain decoding: toward real-time reconstruction of visual perception Abstract: In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with remarkable fidelity. This neuroimaging technique, however, suffers from a limited temporal resolution (≈0.5 Hz) and thus fundamentally constrains its real-time usage. Here, we propose an alternative approach based on magnetoencephalography (MEG), a neuroimaging device capable of measuring brain activity with high temporal resolution (≈5,000 Hz). For this, we develop an MEG decoding model trained with both contrastive and regression objectives and consisting of three modules: i) pretrained embeddings obtained from the image, ii) an MEG module trained end-to-end and iii) a pretrained image generator. Our results are threefold: Firstly, our MEG decoder shows a 7X improvement of image-retrieval over classic linear decoders. Second, late brain responses to images are best decoded with DINOv2, a recent foundational image model. Third, image retrievals and generations both suggest that MEG signals primarily contain high-level visual features, whereas the same approach applied to 7T fMRI also recovers low-level features. Overall, these results provide an important step towards the decoding - in real time - of the visual processes continuously unfolding within the human brain. Speaker: Dr. Paul Scotti (Stability AI, MedARC) Paper link: https://arxiv.org/abs/2310.19812

SeminarNeuroscience

In vivo direct imaging of neuronal activity at high temporospatial resolution

Jang-Yeon Park
Sungkyunkwan University, Suwon, Korea
Jun 27, 2023

Advanced noninvasive neuroimaging methods provide valuable information on the brain function, but they have obvious pros and cons in terms of temporal and spatial resolution. Functional magnetic resonance imaging (fMRI) using blood-oxygenation-level-dependent (BOLD) effect provides good spatial resolution in the order of millimeters, but has a poor temporal resolution in the order of seconds due to slow hemodynamic responses to neuronal activation, providing indirect information on neuronal activity. In contrast, electroencephalography (EEG) and magnetoencephalography (MEG) provide excellent temporal resolution in the millisecond range, but spatial information is limited to centimeter scales. Therefore, there has been a longstanding demand for noninvasive brain imaging methods capable of detecting neuronal activity at both high temporal and spatial resolution. In this talk, I will introduce a novel approach that enables Direct Imaging of Neuronal Activity (DIANA) using MRI that can dynamically image neuronal spiking activity in milliseconds precision, achieved by data acquisition scheme of rapid 2D line scan synchronized with periodically applied functional stimuli. DIANA was demonstrated through in vivo mouse brain imaging on a 9.4T animal scanner during electrical whisker-pad stimulation. DIANA with milliseconds temporal resolution had high correlations with neuronal spike activities, which could also be applied in capturing the sequential propagation of neuronal activity along the thalamocortical pathway of brain networks. In terms of the contrast mechanism, DIANA was almost unaffected by hemodynamic responses, but was subject to changes in membrane potential-associated tissue relaxation times such as T2 relaxation time. DIANA is expected to break new ground in brain science by providing an in-depth understanding of the hierarchical functional organization of the brain, including the spatiotemporal dynamics of neural networks.

SeminarNeuroscience

Movement planning as a window into hierarchical motor control

Katja Kornysheva
Centre for Human Brain (CHBH) at the University of Birmingham, UK
Jun 14, 2023

The ability to organise one's body for action without having to think about it is taken for granted, whether it is handwriting, typing on a smartphone or computer keyboard, tying a shoelace or playing the piano. When compromised, e.g. in stroke, neurodegenerative and developmental disorders, the individuals’ study, work and day-to-day living are impacted with high societal costs. Until recently, indirect methods such as invasive recordings in animal models, computer simulations, and behavioural markers during sequence execution have been used to study covert motor sequence planning in humans. In this talk, I will demonstrate how multivariate pattern analyses of non-invasive neurophysiological recordings (MEG/EEG), fMRI, and muscular recordings, combined with a new behavioural paradigm, can help us investigate the structure and dynamics of motor sequence control before and after movement execution. Across paradigms, participants learned to retrieve and produce sequences of finger presses from long-term memory. Our findings suggest that sequence planning involves parallel pre-ordering of serial elements of the upcoming sequence, rather than a preparation of a serial trajectory of activation states. Additionally, we observed that the human neocortex automatically reorganizes the order and timing of well-trained movement sequences retrieved from memory into lower and higher-level representations on a trial-by-trial basis. This echoes behavioural transfer across task contexts and flexibility in the final hundreds of milliseconds before movement execution. These findings strongly support a hierarchical and dynamic model of skilled sequence control across the peri-movement phase, which may have implications for clinical interventions.

SeminarNeuroscienceRecording

Estimating repetitive spatiotemporal patterns from resting-state brain activity data

Yusuke Takeda
Computational Brain Dynamics Team, RIKEN Center for Advanced Intelligence Project, Japan; Department of Computational Brain Imaging, ATR Neural Information Analysis Laboratories, Japan
Apr 27, 2023

Repetitive spatiotemporal patterns in resting-state brain activities have been widely observed in various species and regions, such as rat and cat visual cortices. Since they resemble the preceding brain activities during tasks, they are assumed to reflect past experiences embedded in neuronal circuits. Moreover, spatiotemporal patterns involving whole-brain activities may also reflect a process that integrates information distributed over the entire brain, such as motor and visual information. Therefore, revealing such patterns may elucidate how the information is integrated to generate consciousness. In this talk, I will introduce our proposed method to estimate repetitive spatiotemporal patterns from resting-state brain activity data and show the spatiotemporal patterns estimated from human resting-state magnetoencephalography (MEG) and electroencephalography (EEG) data. Our analyses suggest that the patterns involved whole-brain propagating activities that reflected a process to integrate the information distributed over frequencies and networks. I will also introduce our current attempt to reveal signal flows and their roles in the spatiotemporal patterns using a big dataset. - Takeda et al., Estimating repetitive spatiotemporal patterns from resting-state brain activity data. NeuroImage (2016); 133:251-65. - Takeda et al., Whole-brain propagating patterns in human resting-state brain activities. NeuroImage (2021); 245:118711.

SeminarNeuroscience

From Computation to Large-scale Neural Circuitry in Human Belief Updating

Tobias Donner
University Medical Center Hamburg-Eppendorf
Jun 28, 2022

Many decisions under uncertainty entail dynamic belief updating: multiple pieces of evidence informing about the state of the environment are accumulated across time to infer the environmental state, and choose a corresponding action. Traditionally, this process has been conceptualized as a linear and perfect (i.e., without loss) integration of sensory information along purely feedforward sensory-motor pathways. Yet, natural environments can undergo hidden changes in their state, which requires a non-linear accumulation of decision evidence that strikes a tradeoff between stability and flexibility in response to change. How this adaptive computation is implemented in the brain has remained unknown. In this talk, I will present an approach that my laboratory has developed to identify evidence accumulation signatures in human behavior and neural population activity (measured with magnetoencephalography, MEG), across a large number of cortical areas. Applying this approach to data recorded during visual evidence accumulation tasks with change-points, we find that behavior and neural activity in frontal and parietal regions involved in motor planning exhibit hallmarks signatures of adaptive evidence accumulation. The same signatures of adaptive behavior and neural activity emerge naturally from simulations of a biophysically detailed model of a recurrent cortical microcircuit. The MEG data further show that decision dynamics in parietal and frontal cortex are mirrored by a selective modulation of the state of early visual cortex. This state modulation is (i) specifically expressed in the alpha frequency-band, (ii) consistent with feedback of evolving belief states from frontal cortex, (iii) dependent on the environmental volatility, and (iv) amplified by pupil-linked arousal responses during evidence accumulation. Together, our findings link normative decision computations to recurrent cortical circuit dynamics and highlight the adaptive nature of decision-related long-range feedback processing in the brain.

SeminarNeuroscience

Adaptive neural network classifier for decoding finger movements

Alexey Zabolotniy
HSE University
Jun 1, 2022

While non-invasive Brain-to-Computer interface can accurately classify the lateralization of hand moments, the distinction of fingers activation in the same hand is limited by their local and overlapping representation in the motor cortex. In particular, the low signal-to-noise ratio restrains the opportunity to identify meaningful patterns in a supervised fashion. Here we combined Magnetoencephalography (MEG) recordings with advanced decoding strategy to classify finger movements at single trial level. We recorded eight subjects performing a serial reaction time task, where they pressed four buttons with left and right index and middle fingers. We evaluated the classification performance of hand and finger movements with increasingly complex approaches: supervised common spatial patterns and logistic regression (CSP + LR) and unsupervised linear finite convolutional neural network (LF-CNN). The right vs left fingers classification performance was accurate above 90% for all methods. However, the classification of the single finger provided the following accuracy: CSP+SVM : – 68 ± 7%, LF-CNN : 71 ± 10%. CNN methods allowed the inspection of spatial and spectral patterns, which reflected activity in the motor cortex in the theta and alpha ranges. Thus, we have shown that the use of CNN in decoding MEG single trials with low signal to noise ratio is a promising approach that, in turn, could be extended to a manifold of problems in clinical and cognitive neuroscience.

SeminarNeuroscienceRecording

Hippocampal gamma oscillations mediating cortico-hippocampal oscillations and shaping hippocampal temporal code

Francesco Battaglia
Radboud Universiteit Nijmegen
Apr 3, 2022
SeminarNeuroscienceRecording

Visualization and manipulation of our perception and imagery by BCI

Takufumi Yanagisawa
Osaka University
Mar 31, 2022

We have been developing Brain-Computer Interface (BCI) using electrocorticography (ECoG) [1] , which is recorded by electrodes implanted on brain surface, and magnetoencephalography (MEG) [2] , which records the cortical activities non-invasively, for the clinical applications. The invasive BCI using ECoG has been applied for severely paralyzed patient to restore the communication and motor function. The non-invasive BCI using MEG has been applied as a neurofeedback tool to modulate some pathological neural activities to treat some neuropsychiatric disorders. Although these techniques have been developed for clinical application, BCI is also an important tool to investigate neural function. For example, motor BCI records some neural activities in a part of the motor cortex to generate some movements of external devices. Although our motor system consists of complex system including motor cortex, basal ganglia, cerebellum, spinal cord and muscles, the BCI affords us to simplify the motor system with exactly known inputs, outputs and the relation of them. We can investigate the motor system by manipulating the parameters in BCI system. Recently, we are developing some BCIs to visualize and manipulate our perception and mental imagery. Although these BCI has been developed for clinical application, the BCI will be useful to understand our neural system to generate the perception and imagery. In this talk, I will introduce our study of phantom limb pain [3] , that is controlled by MEG-BCI, and the development of a communication BCI using ECoG [4] , that enable the subject to visualize the contents of their mental imagery. And I would like to discuss how much we can control our cortical activities that represent our perception and mental imagery. These examples demonstrate that BCI is a promising tool to visualize and manipulate the perception and imagery and to understand our consciousness. References 1. Yanagisawa, T., Hirata, M., Saitoh, Y., Kishima, H., Matsushita, K., Goto, T., Fukuma, R., Yokoi, H., Kamitani, Y., and Yoshimine, T. (2012). Electrocorticographic control of a prosthetic arm in paralyzed patients. AnnNeurol 71, 353-361. 2. Yanagisawa, T., Fukuma, R., Seymour, B., Hosomi, K., Kishima, H., Shimizu, T., Yokoi, H., Hirata, M., Yoshimine, T., Kamitani, Y., et al. (2016). Induced sensorimotor brain plasticity controls pain in phantom limb patients. Nature communications 7, 13209. 3. Yanagisawa, T., Fukuma, R., Seymour, B., Tanaka, M., Hosomi, K., Yamashita, O., Kishima, H., Kamitani, Y., and Saitoh, Y. (2020). BCI training to move a virtual hand reduces phantom limb pain: A randomized crossover trial. Neurology 95, e417-e426. 4. Ryohei Fukuma, Takufumi Yanagisawa, Shinji Nishimoto, Hidenori Sugano, Kentaro Tamura, Shota Yamamoto, Yasushi Iimura, Yuya Fujita, Satoru Oshino, Naoki Tani, Naoko Koide-Majima, Yukiyasu Kamitani, Haruhiko Kishima (2022). Voluntary control of semantic neural representations by imagery with conflicting visual stimulation. arXiv arXiv:2112.01223.

SeminarNeuroscienceRecording

Functional gait disorders: a sign-based approach

Jorik Nonnekes
Radboud University Medical Centre, Nijmegen, the Netherlands
Oct 11, 2021
SeminarNeuroscience

Exploring the neurogenetic basis of speech, language, and vocal communication

Sonja Vernes
Max Planck Institute for Psycholinguistics Nijmegen, The Netherlands
Sep 15, 2021
SeminarNeuroscienceRecording

Interpreting the Mechanisms and Meaning of Sensorimotor Beta Rhythms with the Human Neocortical Neurosolver (HNN) Neural Modeling Software

Stephanie Jones
Brown University
Sep 7, 2021

Electro- and magneto-encephalography (EEG/MEG) are the leading methods to non-invasively record human neural dynamics with millisecond temporal resolution. However, it can be extremely difficult to infer the underlying cellular and circuit level origins of these macro-scale signals without simultaneous invasive recordings. This limits the translation of E/MEG into novel principles of information processing, or into new treatment modalities for neural pathologies. To address this need, we developed the Human Neocortical Neurosolver (HNN: https://hnn.brown/edu ), a new user-friendly neural modeling tool designed to help researchers and clinicians interpret human imaging data. A unique feature of HNN’s model is that it accounts for the biophysics generating the primary electric currents underlying such data, so simulation results are directly comparable to source localized data. HNN is being constructed with workflows of use to study some of the most commonly measured E/MEG signals including event related potentials, and low frequency brain rhythms. In this talk, I will give an overview of this new tool and describe an application to study the origin and meaning of 15-29Hz beta frequency oscillations, known to be important for sensory and motor function. Our data showed that in primary somatosensory cortex these oscillations emerge as transient high power ‘events’. Functionally relevant differences in averaged power reflected a difference in the number of high-power beta events per trial (“rate”), as opposed to changes in event amplitude or duration. These findings were consistent across detection and attention tasks in human MEG, and in local field potentials from mice performing a detection task. HNN modeling led to a new theory on the circuit origin of such beta events and suggested beta causally impacts perception through layer specific recruitment of cortical inhibition, with support from invasive recordings in animal models and high-resolution MEG in humans. In total, HNN provides an unpresented biophysically principled tool to link mechanism to meaning of human E/MEG signals.

SeminarNeuroscienceRecording

Using Human Stem Cells to Uncover Genetic Epilepsy Mechanisms

Jack Parent
University of Michigan Medical School.
Jul 20, 2021

Reprogramming somatic cells to a pluripotent state via the induced pluripotent stem cell (iPSC) method offers an increasingly utilized approach for neurological disease modeling with patient-derived cells. Several groups, including ours, have applied the iPSC approach to model severe genetic developmental and epileptic encephalopathies (DEEs) with patient-derived cells. Although most studies to date involve 2-D cultures of patient-derived neurons, brain organoids are increasingly being employed to explore genetic DEE mechanisms. We are applying this approach to understand PMSE (Polyhydramnios, Megalencephaly and Symptomatic Epilepsy) syndrome, Rett Syndrome (in collaboration with Ben Novitch at UCLA) and Protocadherin-19 Clustering Epilepsy (PCE). I will describe our findings of robust structural phenotypes in PMSE and PCE patient-derived brain organoid models, as well as functional abnormalities identified in fusion organoid models of Rett syndrome. In addition to showing epilepsy-relevant phenotypes, both 2D and brain organoid cultures offer platforms to identify novel therapies. We will also discuss challenges and recent advances in the brain organoid field, including a new single rosette brain organoid model that we have developed. The field is advancing rapidly and our findings suggest that brain organoid approaches offers great promise for modeling genetic neurodevelopmental epilepsies and identifying precision therapies.

SeminarNeuroscienceRecording

Retroviruses and retrotransposons interacting with the 3D genome in mouse and human brain

Schahram Akbarian
Icahn School of Medicine at Mt. Sinai
Jun 16, 2021

Repeat-rich sequence blocks are considered major determinants for 3D folding and structural genome organization in the cell nucleus in all higher eukaryotes. Here, we discuss how megabase-scale chromatin domain and chromosomal compartment organization in adult mouse cerebral cortex is linked, in highly cell type-specific fashion, to multiple retrotransposon superfamilies which comprise the vast majority of mobile DNA elements in the murine genome. We show that neuronal megadomain architectures include an evolutionarily adaptive heterochromatic organization which, upon perturbation, unleashes proviruses from the Long Terminal Repeat (LTR) Endogenous Retrovirus family that exhibit strong tropism in mature neurons. Furthermore, we mapped, in the human brain, cell type-specific genomic integration patterns of the human pathogen and exogenous retrovirus, HIV, together with changes in genome organization and function of the HIV infected brain. Our work highlights the critical importance of chromosomal conformations and the ‘spatial genome’ for neuron- and glia-specific regulatory mechanisms and defenses aimed at exogenous and endogenous retrotransposons in the brain

SeminarNeuroscienceRecording

How multisensory perception is shaped by causal inference and serial effects

Christoph Kayser
Bielefeld University
Apr 21, 2021
SeminarNeuroscience

Multisensory Perception: Behaviour, Computations and Neural Mechanisms

Uta Noppeney
Donders Institute for Brain, Cognition and Behaviour, Nijmegen, The Netherlands
Jan 17, 2021

Our senses are constantly bombarded with a myriad of diverse signals. Transforming this sensory cacophony into a coherent percept of our environment relies on solving two computational challenges: First, we need to solve the causal inference problem - deciding whether signals come from a common cause and thus should be integrated, or come from different sources and be treated independently. Second, when there is a common cause, we should integrate signals across the senses weighted in proportion to their sensory reliabilities. I discuss recent research at the behavioural, computational and neural systems level that investigates how the brain addresses these two computational challenges in multisensory perception.

SeminarNeuroscienceRecording

The Learning Salon

Iris van Rooij
Radboud University Nijmegen
Dec 10, 2020

In the Learning Salon, we will discuss the similarities and differences between biological and machine learning, including individuals with diverse perspectives and backgrounds, so we can all learn from one another.

SeminarNeuroscience

From oscillations to laminar responses - characterising the neural circuitry of autobiographical memories

Eleanor Maguire
Wellcome Centre for Human Neuroimaging at UCL
Nov 30, 2020

Autobiographical memories are the ghosts of our past. Through them we visit places long departed, see faces once familiar, and hear voices now silent. These, often decades-old, personal experiences can be recalled on a whim or come unbidden into our everyday consciousness. Autobiographical memories are crucial to cognition because they facilitate almost everything we do, endow us with a sense of self and underwrite our capacity for autonomy. They are often compromised by common neurological and psychiatric pathologies with devastating effects. Despite autobiographical memories being central to everyday mental life, there is no agreed model of autobiographical memory retrieval, and we lack an understanding of the neural mechanisms involved. This precludes principled interventions to manage or alleviate memory deficits, and to test the efficacy of treatment regimens. This knowledge gap exists because autobiographical memories are challenging to study – they are immersive, multi-faceted, multi-modal, can stretch over long timescales and are grounded in the real world. One missing piece of the puzzle concerns the millisecond neural dynamics of autobiographical memory retrieval. Surprisingly, there are very few magnetoencephalography (MEG) studies examining such recall, despite the important insights this could offer into the activity and interactions of key brain regions such as the hippocampus and ventromedial prefrontal cortex. In this talk I will describe a series of MEG studies aimed at uncovering the neural circuitry underpinning the recollection of autobiographical memories, and how this changes as memories age. I will end by describing our progress on leveraging an exciting new technology – optically pumped MEG (OP-MEG) which, when combined with virtual reality, offers the opportunity to examine millisecond neural responses from the whole brain, including deep structures, while participants move within a virtual environment, with the attendant head motion and vestibular inputs.

SeminarNeuroscience

Information transfer in (barrel) cortex: from single cell to network

Fleur Zeldenrust
Department of Neurophysiology, Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands
Nov 22, 2020
SeminarNeuroscience

Investigating the impact of the pandemic on adolescent anxiety and cognitive function

Meg Atwood
University of Bristol
Nov 9, 2020

Meg was awarded funding to look into how the coronavirus pandemic has affected children's mental health and wellbeing.

SeminarNeuroscienceRecording

Non-invasive stimulation for ataxias

Bart van de Warrenburg
Radboud University Medical Centre, Nijmegen, Netherlands
Nov 2, 2020
SeminarNeuroscience

Harnessing the potential of human neurons-on-a-chip to model neurodevelopmental disorders

Nael Nadif Kasri
Radboudumc (Nijmegen, The Netherlands)
Oct 20, 2020
SeminarNeuroscienceRecording

Neuroscience Investigations in the Virgin Lands of African Biodiversity

James O Olopade
University of Ibadan
May 21, 2020

Africa is blessed with a rich diversity and abundance in rodent and avian populations. This natural endowment on the continent portends research opportunities to study unique anatomical profiles and investigate animal models that may confer better neural architecture to study neurodegenerative diseases, adult neurogenesis, stroke and stem cell therapies. To this end, African researchers are beginning to pay closer attention to some of her indigenous rodents and birds in an attempt to develop spontaneous laboratory models for homegrown neuroscience-based research. For this presentation, I will be showing studies in our lab, involving cellular neuroanatomy of two rodents, the African giant rat (AGR) and Greater cane rat (GCR), Eidolon Bats (EB) and also the Striped Owl (SO). Using histological stains (Cresyl violet and Rapid Golgi) and immunohistochemical biomarkers (GFAP, NeuN, CNPase, Iba-1, Collagen 2, Doublecortin, Ki67, Calbindin, etc), and Electron Microscopy, morphology and functional organizations of neuronal and glial populations of the AGR , GCR, EB and SO brains have been described, with our work ongoing. In addition, the developmental profiles of the prenatal GCR brains have been chronicled across its entire gestational period. Brains of embryos/foetuses were harvested for gross morphological descriptions and then processed using immunofluorescence biomarkers to determine the pattern, onset, duration and peak of neurogenesis (Pax6, Tbr1, Tbr2, NF, HuCD, MAP2) and the onset and peak of glial cell expressions and myelination in the prenatal GCR. The outcome of these research efforts has shown unique neuroanatomical expressions and networks amongst Africa’s rich biodiversity. It is hopeful that continuous effort in this regard will provide sufficient basic research data on neural developments and cellular neuroanatomy with subsequent translational consequences.

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