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MRS

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7 curated items5 Seminars1 Position1 ePoster
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7 items · MRS
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Position

Prof Bhismadev Chakrabarti

Centre for Integrative Neuroscience & Neurodynamics, University of Reading
Reading, UK
Dec 5, 2025

We are looking for a talented and motivated postdoctoral researcher to work on a ERC funded project investigating the links between gut microbiota and brain function in humans. The researcher will be joining a dynamic team of neuroscientists and microbiologists. The aim of this project is to test if different populations of gut bacteria influence upon specific aspects of brain function and behaviour. Brain and behavioural function will be measured using a set of techniques including Magnetic Resonance Imaging, Magnetic Resonance Spectroscopy, and Psychophysics. The postholder will be responsible for the brain and behavioural aspects of the project, and is expected to contribute to the design of the experiments, data collection, as well as the analysis of data. The postholder will be expected to present the results of the study in conferences and peer-reviewed publications. The project presents a significant hands-on opportunity to learn about the emerging field of gut-brain interactions in humans, and multiple relevant techniques. The appointed individual will receive strong mentoring from established scholars as part of this project and be supported in developing new ideas. APPLY HERE: https://www.jobs.ac.uk/job/CCK590/postdoctoral-research-fellow

SeminarPhysics of LifeRecording

Trapping active particles up to the limiting case: bacteria enclosed in a biofilm

Chantal Valeriani
Complutense Madrid
May 25, 2021

Active matter systems are composed of constituents, each one in nonequilibrium, that consume energy in order to move [1]. A characteristic feature of active matter is collective motion leading to nonequilibrium phase transitions or large scale directed motion [2]. A number of recent works have featured active particles interacting with obstacles, either moving or fixed [3,4,5]. When an active particle encounters an asymmetric obstacle, different behaviours are detected depending on the nature of its active motion. On the one side, rectification effects arise in a suspension of run-and-tumble particles interacting with a wall of funnelled-shaped openings, caused by particles persistence length [6]. The same trapping mechanism could be responsible for the intake of microorganisms in the underground leaves [7] of Carnivorous plants [8]. On the other side, for aligning particles [9] interacting with a wall of funnelled-shaped openings, trapping happens on the (opposite) wider opening side of the funnels [10,11]. Interestingly, when funnels are located on a circular array, trapping is more localised and depends on the nature of the Vicsek model. Active particles can be synthetic (such as synthetic active colloids) or alive (such as living bacteria). A prototypical model to study living microswimmers is P. fluorescens, a rod shaped and biofilm forming bacterium. Biofilms are microbial communities self-assembled onto external interfaces. Biofilms can be described within the Soft Matter physics framework [12] as a viscoelastic material consisting of colloids (bacterial cells) embedded in a cross-linked polymer gel (polysaccharides cross-linked via proteins/multivalent cations), whose water content vary depending on the environmental conditions. Bacteria embedded in the polymeric matrix control biofilm structure and mechanical properties by regulating its matrix composition. We have recently monitored structural features of Pseudomonas fluorescens biofilms grown with and without hydrodynamic stress [13,14]. We have demonstrated that bacteria are capable of self-adapting to hostile hydrodynamic stress by tailoring the biofilm chemical composition, thus affecting both the mesoscale structure of the matrix and its viscoelastic properties that ultimately regulate the bacteria-polymer interactions. REFERENCES [1] C. Bechinger et al. Rev. Mod. Phys. 88, 045006 (2016); [2] T. Vicsek, A. Zafeiris Phys. Rep. 517, 71 (2012); [3] C. Bechinger, R. Di Leonardo, H. Lowen, C. Reichhardt, G. Volpe, and G. Volpe, Reviews of Modern Physics 88, 045006 (2016); [4] R Martinez, F Alarcon, DR Rodriguez, JL Aragones, C Valeriani The European Physical Journal E 41, 1 (2018); [5] DR Rodriguez, F Alarcon, R Martinez, J Ramírez, C Valeriani, Soft matter 16 (5), 1162 (2020); [6] C. O. Reichhardt and C. Reichhardt, Annual Review of Condensed Matter
Physics 8, 51 (2017); [7] W Barthlott, S Porembski, E Fischer, B Gemmel Nature 392, 447 (1998); [8] C B. Giuliano, R Zhang, R.Martinez Fernandez, C.Valeriani and L.Wilson (in preparation, 2021); [9] R Martinez, F Alarcon, JL Aragones, C Valeriani Soft matter 16 (20), 4739 (2020); [10] P. Galajada, J. Keymer, P. Chaikin and R.Austin, Journal of bacteriology, 189, 8704 (2007); [11] M. Wan, C.O. Reichhardt, Z. Nussinov, and C. Reichhardt, Physical Review Letters 101, 018102 (2008); [12] J N. Wilking , T E. Angelini , A Seminara , M P. Brenner , and D A. Weitz MRS Bulletin 36, 385 (2011); [13]J Jara, F Alarcón, A K Monnappa, J Ignacio Santos, V Bianco, P Nie, M Pica Ciamarra, A Canales, L Dinis, I López-Montero, C Valeriani, B Orgaz, Frontiers in microbiology 11, 3460 (2021); [14] P Nie, F Alarcon, I López-Montero, B Orgaz, C Valeriani, M Pica Ciamarra

SeminarNeuroscience

From function to cognition: New spectroscopic tools for studying brain neurochemistry in-vivo

Assaf Tal
Weizmann Institute
Apr 21, 2021

In this seminar, I will present new methods in magnetic resonance spectroscopy (MRS) we’ve been working on in the lab. The talk will be divided into two parts. In the first, I will talk about neurochemical changes we observe in glutamate and GABA during various paradigms, including simple motors tasks and reinforcement learning. In the second part, I’ll present a new approach to MRS that focuses on measuring the relaxation times (T1, T2) of metabolites, which reflect changes to specific cellular microenvironments. I will explain why these can be exciting markers for studying several in-vivo pathologies, and also present some preliminary data from a cohort of mild cognitive impairment (MCI) patients, showing changes that correlate to cognitive decline.

SeminarNeuroscienceRecording

Understanding sensorimotor control at global and local scales

Kelly Clancy
Mrsic-Flogel lab, Sainsbury Wellcome Centre
Mar 9, 2021

The brain is remarkably flexible, and appears to instantly reconfigure its processing depending on what’s needed to solve a task at hand: fMRI studies indicate that distal brain areas appear to fluidly couple and decouple with one another depending on behavioral context. But the structural architecture of the brain is comprised of long-range axonal projections that are relatively fixed by adulthood. How does the global dynamism evident in fMRI recordings manifest at a cellular level? To bridge the gap between the activity of single neurons and cortex-wide networks, we correlated electrophysiological recordings of individual neurons in primary visual (V1) and retrosplenial (RSP) associational cortex with activity across dorsal cortex, recorded simultaneously using widefield calcium imaging. We found that individual neurons in both cortical areas independently engaged in different distributed cortical networks depending on the animal’s behavioral state, suggesting that locomotion puts cortex into a more sensory driven mode relevant for navigation.

ePoster

A qualitative analysis of the relationship of glutamate and glutamine and metabolic profiling in focal epilepsy using 7T CRT-FID-MRSI

Stefanie Chambers, Haniye Shayeste, Philipp Lazen, Matthias Tomschik, Jonathan Wais, Lukas Hingerl, Bernhard Strasser, Lukas Haider, Gregor Kasprian, Tatjana Traub-Weidinger, Christoph Baumgartner, Johannes Koren, Katharina Moser, Florian Mayer, Martha Feucht, Christian Dorfer, Ekaterina Pataraia, Wolfgang Bogner, Siegfried Trattnig, Karl Rössler, Gilbert Hangel

FENS Forum 2024