Neural Population Dynamics
neural population dynamics
N/A
The PostDoctoral researcher will conduct research activities in modelling and simulation of reward-modulated prosocial behavior and decision-making. The position is part of a larger effort to uncover the computational and mechanistic bases of prosociality and empathy at the behavioral and circuit levels. The role involves working at the interface between experimental data (animal behavior and electrophysiology) and theoretical modelling, with an emphasis on Multi-Agent Reinforcement Learning and neural population dynamics.
Ann Kennedy
The Kennedy lab is recruiting for multiple funded postdoctoral positions in theoretical and computational neuroscience, following our recent lab move to Scripps Research in San Diego, CA! Ongoing projects in the lab span topics in: reservoir computing with heterogeneous cell types, reinforcement learning/control theory analysis of complex behavior, neuromechanical whole-organism modeling, diffusion models for imitation learning/forecasting of mouse social interactions, joint analysis/modeling of effects of internal states on neural + vocalization + behavior data. With additional NIH and foundation funding for: characterizing progression of behavioral phenotypes in Parkinson’s, modeling cellular/circuit mechanisms underlying internal state-dependent changes in neural population dynamics, characterizing neural correlates of social relationships across species. Projects are flexible and can be tailored to applicants’ research and training goals, and there are abundant opportunities for new collaboration with local experimental groups. San Diego has a fantastic research community and very high quality of life. Our campus is located at the Pacific coast, at the northern edge of UCSD and not far from the Salk Institute. Postdoctoral stipends are well above NIH guidelines and include a relocation bonus, with research professorship positions available for qualified applicants.
Probing neural population dynamics with recurrent neural networks
Large-scale recordings of neural activity are providing new opportunities to study network-level dynamics with unprecedented detail. However, the sheer volume of data and its dynamical complexity are major barriers to uncovering and interpreting these dynamics. I will present latent factor analysis via dynamical systems, a sequential autoencoding approach that enables inference of dynamics from neuronal population spiking activity on single trials and millisecond timescales. I will also discuss recent adaptations of the method to uncover dynamics from neural activity recorded via 2P Calcium imaging. Finally, time permitting, I will mention recent efforts to improve the interpretability of deep-learning based dynamical systems models.
NMC4 Keynote: Latent variable modeling of neural population dynamics - where do we go from here?
Large-scale recordings of neural activity are providing new opportunities to study network-level dynamics with unprecedented detail. However, the sheer volume of data and its dynamical complexity are major barriers to uncovering and interpreting these dynamics. I will present machine learning frameworks that enable inference of dynamics from neuronal population spiking activity on single trials and millisecond timescales, from diverse brain areas, and without regard to behavior. I will then demonstrate extensions that allow recovery of dynamics from two-photon calcium imaging data with surprising precision. Finally, I will discuss our efforts to facilitate comparisons within our field by curating datasets and standardizing model evaluation, including a currently active modeling challenge, the 2021 Neural Latents Benchmark [neurallatents.github.io].
Neural Population Dynamics for Skilled Motor Control
The ability to reach, grasp, and manipulate objects is a remarkable expression of motor skill, and the loss of this ability in injury, stroke, or disease can be devastating. These behaviors are controlled by the coordinated activity of tens of millions of neurons distributed across many CNS regions, including the primary motor cortex. While many studies have characterized the activity of single cortical neurons during reaching, the principles governing the dynamics of large, distributed neural populations remain largely unknown. Recent work in primates has suggested that during the execution of reaching, motor cortex may autonomously generate the neural pattern controlling the movement, much like the spinal central pattern generator for locomotion. In this seminar, I will describe recent work that tests this hypothesis using large-scale neural recording, high-resolution behavioral measurements, dynamical systems approaches to data analysis, and optogenetic perturbations in mice. We find, by contrast, that motor cortex requires strong, continuous, and time-varying thalamic input to generate the neural pattern driving reaching. In a second line of work, we demonstrate that the cortico-cerebellar loop is not critical for driving the arm towards the target, but instead fine-tunes movement parameters to enable precise and accurate behavior. Finally, I will describe my future plans to apply these experimental and analytical approaches to the adaptive control of locomotion in complex environments.
Predictive processing in the macaque frontal cortex during time estimation
According to the theory of predictive processing, expectations modulate neural activity so as to optimize the processing of sensory inputs expected in the current environment. While there is accumulating evidence that the brain indeed operates under this principle, most of the attention has been placed on mechanisms that rely on static coding properties of neurons. The potential contribution of dynamical features, such as those reflected in the evolution of neural population dynamics, has thus far been overlooked. In this talk, I will present evidence for a novel mechanism for predictive processing in the temporal domain which relies on neural population dynamics. I will use recordings from the frontal cortex of macaques trained on a time interval reproduction task and show how neural dynamics can be directly related to animals’ temporal expectations, both in a stationary environment and during learning.
Towards generalized inference of single-trial neural population dynamics
How connection probability shapes fluctuations of neural population dynamics
Bernstein Conference 2024
Optimal control of oscillations and synchrony in nonlinear models of neural population dynamics
Bernstein Conference 2024
Neural population dynamics of computing with synaptic modulations
COSYNE 2023
Comparing noisy neural population dynamics using optimal transport distances
COSYNE 2025
How connection probability shapes fluctuations of neural population dynamics
COSYNE 2025
Sensory expectations shape neural population dynamics during reaching
COSYNE 2025
Mutual information manifold inference for studying neural population dynamics
FENS Forum 2024