Synaptic
synaptic connectivity
Dr Nikolas Nikolaou
Regulation of pre-mRNA splicing plays a significant role in neurons by diversifying the proteome and modulating gene expression during development and in response to physiological cues. Although most pre-mRNA processing reactions are thought to occur in the nucleus, numerous RNA splicing regulators are also found in neurites, however, very little is known about their extra-nuclear functions. We have recently shown that the non-nuclear pool of a major spliceosome component (SNRNP70) modulates the production of alternative spliced mRNA isoforms essential for motor connectivity and protects transcripts from degradation. This project aims to investigate the extra-nuclear activities of SNRNP70 in the context of neuronal connectivity in zebrafish. The ease of genetic manipulations together with the translucency and small size of their offspring allows us to monitor neural cell behaviour and function and observe changes in neuronal connectivity. We will use a range of genetic tools, including transgenic over-expression of cytoplasmic SNRNP70 and nuclear-only SNRNP70 zebrafish knock-in lines to establish developmental functions attributed to the cytoplasmic pool of SNRNP70. The results from this project will contribute to our understanding of how local RNA metabolism in axons contributes to the normal development of neural connections in the brain.
Learning and Memory
This webinar on learning and memory features three experts—Nicolas Brunel, Ashok Litwin-Kumar, and Julijana Gjorgieva—who present theoretical and computational approaches to understanding how neural circuits acquire and store information across different scales. Brunel discusses calcium-based plasticity and how standard “Hebbian-like” plasticity rules inferred from in vitro or in vivo datasets constrain synaptic dynamics, aligning with classical observations (e.g., STDP) and explaining how synaptic connectivity shapes memory. Litwin-Kumar explores insights from the fruit fly connectome, emphasizing how the mushroom body—a key site for associative learning—implements a high-dimensional, random representation of sensory features. Convergent dopaminergic inputs gate plasticity, reflecting a high-dimensional “critic” that refines behavior. Feedback loops within the mushroom body further reveal sophisticated interactions between learning signals and action selection. Gjorgieva examines how activity-dependent plasticity rules shape circuitry from the subcellular (e.g., synaptic clustering on dendrites) to the cortical network level. She demonstrates how spontaneous activity during development, Hebbian competition, and inhibitory-excitatory balance collectively establish connectivity motifs responsible for key computations such as response normalization.
Assigning credit through the "other” connectome
Learning in neural networks requires assigning the right values to thousands to trillions or more of individual connections, so that the network as a whole produces the desired behavior. Neuroscientists have gained insights into this “credit assignment” problem through decades of experimental, modeling, and theoretical studies. This has suggested key roles for synaptic eligibility traces and top-down feedback signals, among other factors. Here we study the potential contribution of another type of signaling that is being revealed in greater and greater fidelity by ongoing molecular and genomics studies. This is the set of modulatory pathways local to a given circuit, which form an intriguing second type of connectome overlayed on top of synaptic connectivity. We will share ongoing modeling and theoretical work that explores the possible roles of this local modulatory connectome in network learning.
How do Astrocytes Sculpt Synaptic Circuits?
How does a neuron decide when and where to make a synapse?
Precise synaptic connectivity is a prerequisite for the function of neural circuits, yet individual neurons, taken out of their developmental context, readily form unspecific synapses. How does genetically encoded brain wiring deal with this apparent contradiction? Brain wiring is a developmental growth process that is not only characterized by precision, but also flexibility and robustness. As in any other growth process, cellular interactions are restricted in space and time. Correspondingly, molecular and cellular interactions are restricted to those that 'get to see' each other during development. This seminar will explore the question how neurons decide when and where to make synapses using the Drosophila visual system as a model. New findings reveal that pattern formation during growth and the kinetics of live neuronal interactions restrict synapse formation and partner choice for neurons that are not otherwise prevented from making incorrect synapses in this system. For example, cell biological mechanisms like autophagy as well as developmental temperature restrict inappropriate partner choice through a process of kinetic exclusion that critically contributes to wiring specificity. The seminar will explore these and other neuronal strategies when and where to make synapses during developmental growth that contribute to precise, flexible and robust outcomes in brain wiring.
Microglia, memories, and the extracellular space
Microglia are the immune cells of the brain, and play increasingly appreciated roles in synapse formation, brain plasticity, and cognition. A growing appreciation that the immune system involved in diseases like schizophrenia, epilepsy, and neurodegenerative diseases has led to renewed interest in how microglia regulate synaptic connectivity. Our group previously identified the IL-1 family cytokine Interleukin-33 (IL-33) as a novel regulator of microglial activation and function. I will discuss a mechanism by which microglia regulate synaptic plasticity and long-term memories by engulfing brain extracellular matrix (ECM) proteins. These studies raise the question of how these pathways may be altered or could be modified in the context of disease.
Glassy phase in dynamically balanced networks
We study the dynamics of (inhibitory) balanced networks at varying (i) the level of symmetry in the synaptic connectivity; and (ii) the ariance of the synaptic efficacies (synaptic gain). We find three regimes of activity. For suitably low synaptic gain, regardless of the level of symmetry, there exists a unique stable fixed point. Using a cavity-like approach, we develop a quantitative theory that describes the statistics of the activity in this unique fixed point, and the conditions for its stability. Increasing the synaptic gain, the unique fixed point destabilizes, and the network exhibits chaotic activity for zero or negative levels of symmetry (i.e., random or antisymmetric). Instead, for positive levels of symmetry, there is multi-stability among a large number of marginally stable fixed points. In this regime, ergodicity is broken and the network exhibits non-exponential relaxational dynamics. We discuss the potential relevance of such a “glassy” phase to explain some features of cortical activity.
A geometric framework to predict structure from function in neural networks
The structural connectivity matrix of synaptic weights between neurons is a critical determinant of overall network function. However, quantitative links between neural network structure and function are complex and subtle. For example, many networks can give rise to similar functional responses, and the same network can function differently depending on context. Whether certain patterns of synaptic connectivity are required to generate specific network-level computations is largely unknown. Here we introduce a geometric framework for identifying synaptic connections required by steady-state responses in recurrent networks of rectified-linear neurons. Assuming that the number of specified response patterns does not exceed the number of input synapses, we analytically calculate all feedforward and recurrent connectivity matrices that can generate the specified responses from the network inputs. We then use this analytical characterization to rigorously analyze the solution space geometry and derive certainty conditions guaranteeing a non-zero synapse between neurons.
Homeostatic regulation of synaptic connectivity across connectomes
Bernstein Conference 2024
Relating synaptic connectivity to function based on a full contactome of a Drosophila motor circuit
COSYNE 2025
Brain-wide monosynaptic connectivity mapping with ROInet-seq
FENS Forum 2024
Evaluation of synaptic connectivity and dysfunction in aging mouse brains using an RNAscope multiomic spatial imaging assay (MSIA) that detects RNA, proteins, and protein interactions
FENS Forum 2024
Parallel decrease of synaptic connectivity and unitary synaptic efficacy suggest code transformation in the mouse hippocampal CA3 network during development
FENS Forum 2024
The rules of synaptic connectivity between motoneurons
FENS Forum 2024