Systems
systems neuroscience
SISSA Neuroscience department
The Neuroscience Department of the International School for Advanced Studies (SISSA; https://www.sissa.it/research/neuroscience) invites expressions of interest from scientists from various fields of Neuroscience for multiple tenure-track positions with anticipated start in 2025. Ongoing neuroscience research at SISSA includes cognitive neuroscience, computational and theoretical neuroscience, systems neuroscience, molecular and cellular research as well as genomics and genetics. The Department intends to potentiate its activities in these fields and to strengthen cross-field interactions. Expressions of interest from scientists in any of these fields are welcome. The working and teaching language of SISSA is English. This is an equal opportunity career initiative and we encourage applications from qualified women, racial and ethnic minorities, and persons with disabilities. Candidates should have a PhD in a relevant field and a proven record of research achievements. A clear potential to promote and lead research activities, and a specific interest in training and supervising PhD students is essential. Interested colleagues should present an original and innovative plan for their independent future research. We encourage both proposals within existing fields at SISSA as well as novel ideas outside of those or spanning various topics and methodologies of Neuroscience. SISSA is an international school promoting basic and applied research in Neuroscience, Mathematics and Physics and dedicated to the training of PhD students. Lab space and other resources will be commensurate with the appointment. Shared facilities include cell culture rooms, viral vector facilities, confocal microscopes, animal facilities, molecular and biochemical facilities, human cognition labs with EEG, TMS, and eye tracking systems, mechatronics workshop, and computing facilities. Agreements with national and international MRI scanning facilities are also in place. SISSA encourages fruitful exchanges between neuroscientists and other researchers including data scientists, physicists and mathematicians. Interested colleagues are invited to send a single pdf file including a full CV, a brief description of past and future research interests (up to 1,000 words), and the names of three referees to neuro.search@sissa.it. Selected candidates will be invited for an online or in-person seminar and 1- on-1 meetings in summer/autumn 2024. Deadline: A first evaluation round will consider all applications submitted before 15 May 2024. Later applications might be considered if no suitable candidates have been identified yet.
SueYeon Chung, Center for Computational Neuroscience, Flatiron Institute
Flatiron Research Fellow (Postdoctoral Fellow), NeuroAI and Geometric Data Analysis Description Applications are invited for Flatiron Research Fellowships (FRF) in the NeuroAI and Geometric Data Analysis Group (SueYeon Chung, PI) at the Center for Computational Neuroscience at the Flatiron Institute of the Simons Foundation, whose focus is on understanding computation in the brain and artificial neural networks by: (1) analyzing geometries underlying neural or feature representations, embedding and transferring information, and (2) developing neural network models and learning rules guided by neuroscience. To do this, the group utilizes analytical methods from statistical physics, machine learning theory, and high-dimensional statistics and geometry.The CCN FRF program offers the opportunity for postdoctoral research in areas that have strong synergy with one or more of the existing research groups at CCN or other centers at the Flatiron Institute. In addition to carrying out an independent research program, Flatiron Research Fellows are expected to: disseminate their results through scientific presentations, publications, and software release, collaborate with other members of the CCN or Flatiron Institute, and participate in the scientific life of the CCN and Flatiron Institute by attending seminars, colloquia, and group meetings. Flatiron Research Fellows may have the opportunity to organize workshops and to mentor graduate and undergraduate students. The mission of CCN is to develop theories, models, and computational methods that deepen our knowledge of brain function — both in health and in disease. CCN takes a “systems" neuroscience approach, building models that are motivated by fundamental principles, that are constrained by properties of neural circuits and responses, and that provide insights into perception, cognition and behavior. This cross-disciplinary approach not only leads to the design of new model-driven scientific experiments, but also encapsulates current functional descriptions of the brain that can spur the development of new engineered computational systems, especially in the realm of machine learning. CCN’s current research groups include computational vision (Eero Simoncelli, PI), neural circuits and algorithms (Dmitri ‘Mitya’ Chklovskii, PI), neuroAI and geometric data analysis (SueYeon Chung, PI), and statistical analysis of neural data (Alex Williams, PI), and is planning to expand the number of research groups in the near term. Interested candidates should review the CCN public website for specific information on CCN’s research areas. Applicants who are interested in a joint appointment between two CCN research groups should submit the same application to both groups, noting the dual application in their research statement. Please note that Alex William’s statistical analysis of neural data group is not recruiting at CCN in 2023. FRF positions are two-year appointments and are generally renewed for a third year, contingent on performance. FRF receive a research budget and have access to the Flatiron Institute’s powerful scientific computing resources. FRF may be eligible for subsidized housing within walking distance of the CCN. Review of applications for positions starting between July and October 2024 will begin in November 2023. For more information about life at the Flatiron Institute, visit https://www.simonsfoundation.org/flatiron/careers.
Neuro-Electronics Research Flanders (NERF)
Want to do a PhD in neurosciences? Join us - we're recruiting! Neuro-Electronics Research Flanders (NERF) is an interdisciplinary research center located in Leuven, Belgium. We study neuronal circuits and develop new technologies to link circuit activity to brain function. We offer students an opportunity to carry out cutting-edge systems neuroscience research in an international and collaborative environment, with multi-disciplinary training and access to advanced neurotechnologies. More details about the positions and NERF can be found at https://nerfphdcall.sites.vib.be/en
Department of Neuroscience, Washington University School of Medicine
Multiple electrophysiology positions available for neuroscientists with experience in in vivo electrophysiology or patch clamp techniques. Our laboratories are looking for passionate scientists with experience with either in vivo electrophysiology or patch clamp electrophysiology (recording and data analysis). Successful applicants will lead innovative experiments in which electrophysiology is a key method, analyze the data, and contribute to writing research papers and grant applications. We are committed to mentoring and offer a creative, thoughtful and collaborative scientific environment. Richards lab (https://sites.wustl.edu/richardslab/): We are seeking a creative scientist with experience in in vivo electrophysiological brain recordings such as local field potentials, multielectrode arrays, and/or in vivo single unit recordings and the analysis of these data. This project will investigate the formation of patterned activity throughout development and into adulthood in a new animal model, the marsupial fat-tailed dunnart. Chen lab (https://sites.wustl.edu/yaochenlab/): The projects aim to understand how the spatial and temporal features of key plasticity signals impact cellular and synaptic electrophysiology, as well as learning and memory. These experiments will be combined with optogenetics and two photon fluorescence lifetime imaging microscopy. We welcome experts in either patch clamp or in vivo electrophysiology, and we can train you for the rest. We welcome individuals who value rigor and craftsmanship, and will value your creativity in shaping the projects. Franken lab (https://sites.wustl.edu/frankenlab/): The electrophysiologist will lead experiments that aim to understand how the brain parses visual scenes into organized collections of objects. They will use advanced behavior, high-density electrode probes (e.g. Neuropixels) and optogenetics to understand how ensembles of neurons in cortical circuits perform these computations. We seek a creative scientist with prior expertise in electrophysiology, and look forward to train you in the other techniques. Our labs are members of the Department of Neuroscience at Washington University School of Medicine in St. Louis, a large and collaborative scientific community. WashU Neuroscience is consistently ranked as one of the top 10 places worldwide for neuroscience research. Additional information on being a postdoc at Washington University in St. Louis can be found at https://postdoc.wustl.edu/prospective-postdocs/ St. Louis is a city rich in culture, green spaces, free museums, world-class restaurants, and thriving music and arts scene. On top of it all, St. Louis is affordable and commuting to Washington University’s campuses is stress-free, whether you go by foot, bike, public transit, or car. The area combines the attractions of a major city with affordable lifestyle opportunities (https://medicine.wustl.edu/about/st-louis/). Washington University is dedicated to building a diverse community of individuals who are committed to contributing to an inclusive environment – fostering respect for all and welcoming individuals from diverse backgrounds, experiences and perspectives. Individuals with a commitment to these values are encouraged to apply. Minimum education & experience The appointee will have earned a Master’s degree or Ph.D. by the time of starting the appointment. Applicants should submit their CV and a cover letter explaining their background and interest in the position to Dr. Linda Richards (linda.richards@wustl.edu), Dr. Yao Chen (yaochen@wustl.edu), or Dr. Tom Franken (ftom@wustl.edu).
Sainsbury Wellcome Centre, UCL
Applications are now open for the 2023 intake to our PhD Programme at the Sainsbury Wellcome Centre at University College London (UCL). This fully-funded 4-year programme offers students: • a comprehensive introduction to theoretical and systems neuroscience • intensive training in experimental techniques, including imaging, physiology, molecular, and behavioural methods in systems neuroscience • a supportive and collaborative environment with teaching by SWC faculty together with colleagues at the Gatsby Computational Neuroscience Unit and other affiliated institutions Based in central London, with the highest concentration of neuroscience research in the world, SWC students are fully funded and receive an annual stipend of £24,278, as well as funds to attend international courses or meetings. We also cover the cost of tuition fees for both home and international students. The SWC PhD programme is an opportunity to receive world-class training as a neuroscientist and launch an exciting career in academia or industry. Apply to join our pool of exceptional students from around the globe. More information on the SWC PhD programme, and details on how to apply, can be found on the website: https://www.sainsburywellcome.org/web/content/neuroscience-phd-programme If you have any queries about the SWC PhD programme, or the application process, please contact us: SWC-PhDprogramme@ucl.ac.uk.
Dr. Peter Petersen
We are seeking a highly motivated postdoctoral fellow for a project addressing the generation and functions of theta oscillations in spatial navigation using systems neuroscience and population-level approaches. The research will take place at the Department of Neuroscience (in.ku.dk) at University of Copenhagen in the lab of Dr. Peter C. Petersen (PetersenLab.org). The project involves performing electrophysiological recordings from freely moving animals using chronically implanted high-density Neuropixels silicon probes and applying optogenetics for single cell tagging, and behavioral manipulations. Learn more about the position and the application process here: https://employment.ku.dk/faculty/?show=157309
Assistant Professor Peter Petersen
We are seeking a highly motivated postdoctoral fellow for a project addressing the generation and functions of theta oscillations in spatial navigation using systems neuroscience and population-level approaches. The research will take place at the Department of Neuroscience (in.ku.dk) at University of Copenhagen in the lab of Dr. Peter C. Petersen (PetersenLab.org). The project involves performing electrophysiological recordings from freely moving animals using chronically implanted high-density Neuropixels silicon probes and applying optogenetics for single cell tagging, and behavioral manipulations. Learn more about the position and the application process here: https://employment.ku.dk/faculty/?show=157309
Emre Yaksi
Interested applying machine learning, applied mathematics & data science tools for analyzing neural connectivity and sequential activation of neural ensembles associated with sensory computations and learning? We are hiring a PhD student ! We offer an excellent and collegial research environment at Kavli Institute for Systems Neuroscience and Norwegian University of Science and Technology (NTNU), in addition to high life-standards of Norway, surrounded by spectacular nature. The deadline for the applications is at end of May 2022. Please spread the word. Apply using this link: https://www.jobbnorge.no/en/available-jobs/job/224137/phd-candidate
IMPRS for Brain & Behavior
Apply to our fully funded, international PhD program in the Max Planck Society! IMPRS for Brain & Behavior is a PhD program in Bonn, Germany that offers a competitive world-class PhD training and research program in the field of neuroethology. IMPRS for Brain & Behavior is a collaboration between research center caesar (a neuroethology institute of the Max Planck Society), the University of Bonn, and the German Center for Neurodegenerative Disease (DZNE) in Bonn. The Projects 20 labs with an enormous variety of research projects are seeking outstanding PhD candidates to join their research. See our website (https://imprs-brain-behavior.mpg.de/faculty_members) for further information on our faculty and possible doctoral projects. Successful candidates will work in a young and dynamic, interdisciplinary, international environment, embedded in the local scientific communities in Bonn, Germany.
Profs Ross Williamson & Amantha Thathiah
A postdoctoral position is available in the Williamson and Thathiah laboratories at the University of Pittsburgh School of Medicine to investigate the links between hearing loss and the pathophysiology of Alzheimer’s disease (AD). The information from our senses is used throughout everyday life to guide the decisions we make and the actions that we take. For example, the sound of sirens when driving leads to a decision regarding an appropriate motor action (whether or not, and where, to pull over). The neural circuits that underlie these cognitive processes (accumulation of sensory evidence, short-term memory, perception decision-making, etc.) can be severely altered by disease. Hearing loss is prevalent in >40% of individuals older than 60 years and is considered to be the most heavily contributing modifiable risk factor to dementia. It is our hope that by identifying and studying the neural circuits involved, we will provide insight to drive subsequent therapeutic intervention strategies that may lead to the repair (or prevention) of damage. The Williamson Laboratory uses a variety of state-of-the-art tools to probe the neural circuits of awake mice, including two-photon calcium imaging and high-channel count electrophysiology (both with single-cell optogenetic perturbations), head-fixed virtual reality behaviors, and statistical approaches for neural characterization. A significant focus of the lab is to understand how sensory information is used to guide purposeful behavior in models of health and disease. Details on the research focus and approaches of the Williamson laboratory can be found here: https://www.williamsonlaboratory.com/research/ The Thathiah Laboratory uses molecular, cellular, and behavioral approaches along with optogenetic tools to investigate the mechanisms of AD pathogenesis. Recently, the Thathiah lab teamed up with the Williamson lab to investigate the putative causal relationship between hearing loss, disease pathogenesis, and cognitive impairment using our complementary research approaches in AD mouse models. Details on the research focus of the Thathiah laboratory can be found here: https://www.neurobio.pitt.edu/people/amantha-thathiah Both laboratories are embedded within the Departments of Neurobiology and Otolaryngology, are members of the University of Pittsburgh Brain Institute, the Pittsburgh Hearing Research Center, and are affiliated with the Center for Neuroscience (CNUP) and the Center for the Neural Basis of Cognition (CNBC). The Thathiah laboratory is a member of the Pittsburgh Institute for Neurodegenerative Diseases (PIND), the Alzheimer’s Disease Research Center (ADRC), and the Aging Institute. Postdoctoral fellows will be part of a highly supportive and diverse research environment with excellent career development opportunities. The University of Pittsburgh was ranked third in terms of total NIH funding received in 2018. The Global Livability Index (The Economist) recently ranked Pittsburgh as the second most livable city in America. The University of Pittsburgh School of Medicine is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, creed, sex, sexual orientation, gender identity, national origin, ancestry, age, veteran status, disability unrelated to job requirements, genetic information, military service, or other protected status. Contact: Interested candidates should send a brief statement of research interests, a current CV, and the names and contact information of three references to: Dr. Ross Williamson: rsw@pitt.edu Dr. Amantha Thathiah: amantha@pitt.edu
Department of Pharmacology
The Department of Pharmacology in the School of Medicine at the University of Virginia invites applications for two open rank tenured/tenure-track faculty positions. We are interested in candidates applying multiscale cutting-edge approaches to study the systems neurobiology of interoceptive physiology and brain-body interactions: how an organism senses, integrates and regulates its internal state. Successful candidates will join a highly collaborative faculty and outstanding research department with strength in this area.
Prof. Itzhak Fried, MD, PhD
The research involves the investigations of the neural mechanisms of memory and cognition in humans. We collect and analyze electrophysiological data including single neuron activity and local field potentials from human epilepsy patients during a variety of memory and cognitive tasks during the awake/sleep cycle, examine the relationships between neural signals and behavior, as well as the effects of electrical stimulation (applied in a closed/open-loop fashion) on neural signals and cognition.
Jian Liu
Three PhD students funded by BBSRC MIBTP. Please find more information on https://sites.google.com/site/jiankliu/join-us 1. Towards a functional model for associative learning and memory formation Drs Jian Liu and Rodrigo Quian Quiroga, CSN/NPB, University of Leicester 2. Neuronal coupling across spatiotemporal scales and dimensions of cortical population activity Drs Michael Okun and Jian Liu, CSN/NPB, University of Leicester 3. Decoding movement from single neurons in motor cortex and their subcortical targets Drs Todor Gerdjikov and Jian Liu, CSN/NPB, University of Leicester
Dr. Giulia Quattrocolo
The Quattrocolo group at the Kavli Institute for Systems Neuroscience has an opening for a postdoctoral candidate in cell and molecular neurobiology. The main research interest of the lab is the study of cortical circuit development. In particular we focus on understanding the influence of specific cell types (such as Cajal-Retzius cells) in the establishment and maturation of the circuit of the hippocampal-entorhinal area. We aim to combine different techniques, from anatomical tracing to transcriptomic, from in vitro to in vivo physiology to reach our goal. The successful candidate will be expected to perform analysis of protein and gene expression levels in physiological and non-physiological development. The position is a full time (100%) position, with a 2-4 years contract, starting in early 2021.
Burcu Ayşen Ürgen
Bilkent University invites applications for multiple open-rank faculty positions in the Department of Neuroscience. The department plans to expand research activities in certain focus areas and accordingly seeks applications from promising or established scholars who have worked in the following or related fields: Cellular/molecular/developmental neuroscience with a strong emphasis on research involving animal models. Systems/cognitive/computational neuroscience with a strong emphasis on research involving emerging data-driven approaches, including artificial intelligence, robotics, brain-machine interfaces, virtual reality, computational imaging, and theoretical modeling. Candidates with a research focus in those areas whose research has a neuroimaging component are particularly encouraged to apply. The Department’s interdisciplinary Graduate Program in Neuroscience that offers Master's and PhD degrees was established in 2014. The department is affiliated with Bilkent’s Aysel Sabuncu Brain Research Center (ASBAM) and the National Magnetic Resonance Research Center (UMRAM). Faculty affiliated with the department has the privilege to access state-of-the-art research facilities in these centers, including animal facilities, cellular/molecular laboratory infrastructure, psychophysics laboratories, eyetracking laboratories, EEG laboratories, a human-robot interaction laboratory, and two MRI scanners (3T and 1.5T).
Peter C. Petersen
The project addresses the generation and functions of theta oscillations in spatial navigation using systems neuroscience and population-level approaches. The project involves performing electrophysiological recordings from freely moving animals using chronically implanted high-density Neuropixels silicon probes and applying optogenetics for single-cell tagging, and behavioral manipulations.
Jenny
We are currently recruiting both a research technician and a fully funded PhD student to work on a Wellcome funded project 'How does the brain map sounds into the world?'. This Wellcome funded project uses a range of systems neuroscience and computational approaches to understand how auditory space is constructed in freely moving animals that are pursuing audio and audiovisual targets. The PhD student will be paid as a research assistant for four years, and have their fees funded at the UK rate.
Dr. Henry Evrard/Ms. Qian Liang
The DEB Lab is seeking to hire highly motivated postdocs or research associates with an interest in systems neuroscience and experience in in vivo electrophysiology. The DEB Lab combines cutting-edge experimental approaches in non-human primates, including simultaneous neuroimaging, neuro-electrophysiology, and body physiology. The aim of the lab is to examine the structural pathways and functional mechanisms underlying the role of interoception in neural network dynamics as well as in behavioral and physiological correlates of subjective perceptual awareness.
Joseph Lizier
The successful candidates will join a dynamic interdisciplinary collaboration between A/Prof Mac Shine (Brain and Mind Centre), A/Prof Joseph Lizier (School of Computer Science) and Dr Ben Fulcher (School of Physics), within the University's Centre for Complex Systems, focused on advancing our understanding of brain function and cognition using cutting-edge computational and neuroimaging techniques at the intersection of network neuroscience, dynamical systems and information theory. The positions are funded by a grant from the Australian Research Council 'Evaluating the Network Neuroscience of Human Cognition to Improve AI'.
Netta Cohen
The School of Computing, at the University of Leeds is recruiting a Lecturer (analogous to tenure-track Assistant Professor) working in computational and systems neuroscience and related areas of artificial and biological intelligence. The position provides an exceptional opportunity to join our internationally outstanding activity and to pursue interdisciplinary research, in collaboration with extensive neuroscience activity in Leeds and beyond. We have a vibrant community of postgraduate and postdoctoral researchers supported by a large portfolio of external research funding. We are core partners in major pan-University initiatives, such as Neur@L (Neuroscience at Leeds), the Leeds Institute for Data Analytics, Robotics Leeds, Centre for HealthTech Innovation, Leeds Cancer Research Centre and Leeds Institute of Fluid Dynamics, as well as in leading national centres such as the Alan Turing Institute.
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The Neuroscience Department of the International School for Advanced Studies (SISSA) invites expressions of interest from scientists for multiple tenure-track positions in various fields of Neuroscience with anticipated start in 2025. The Department aims to enhance its activities in cognitive neuroscience, computational and theoretical neuroscience, systems neuroscience, molecular and cellular research, genomics, and genetics, and to strengthen cross-field interactions. The working and teaching language at SISSA is English. This is an equal opportunity career initiative.
Matthias H Hennig
We are looking for a postdoctoral researcher to develop new machine learning approaches for the analysis of large-scale extracellular recordings. The position is part of a wider effort to enable new discoveries with state-of-the-art electrode arrays and recording devices, and jointly supervised by Matthias Hennig and Matt Nolan. It offers a great opportunity to work with theoretical and experimental neuroscientists innovating open source tools and software for systems neuroscience.
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The PostDoctoral researcher will conduct research activities in modelling and simulation of reward-modulated prosocial behavior and decision-making. The position is part of a larger effort to uncover the computational and mechanistic bases of prosociality and empathy at the behavioral and circuit levels. The role involves working at the interface between experimental data (animal behavior and electrophysiology) and theoretical modelling, with an emphasis on Multi-Agent Reinforcement Learning and neural population dynamics.
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The Department of Psychology at Florida State University (FSU) invites applicants for a full-time tenure-track Assistant Professor position in BEHAVIORAL/SYSTEMS NEUROSCIENCE. Candidates with lines of laboratory animal research in any area of Neuroscience are encouraged to apply, particularly those who work to understand experience-dependent neural activity in the normal or diseased brain. Such research might include spatial navigation, decision making, and/or learning and memory. FSU is classified as a Carnegie R1 (Highest Research Activities) and ranks in the top 20 of National Public Universities (US News & World Reports). Candidates will find an outstanding research infrastructure with scientific colleagues housed in adjacent buildings, and relatively new laboratory space and vivarium. The department has a fully-staffed electronics and machine shop and faculty have access to core equipment and resources including surgical suites, a confocal microscope and common-use histology/molecular laboratory in the building and numerous other shared resources across the program facilities (see https://www.neuro.fsu.edu/rsrc/cores) and campus (e.g., 21T small animal magnet). Our department has outstanding resources, a favorable teaching load, a high level of research activity, and a collegial atmosphere. The neuroscience community across the state of Florida is also highly collaborative. More information about our department and the Program in Neuroscience can be found at www.psy.fsu.edu and www.neuro.fsu.edu. The University is in Tallahassee, the capital of Florida, where residents have access to a broad range of cultural amenities and an abundance of regional springs, lakes and rivers, and pristine beaches on the Gulf of Mexico. Faculty will be expected to maintain a strong research program, train graduate students in the Interdisciplinary Program in Neuroscience, and have the potential for excellent teaching and mentoring of diverse student populations for undergraduate and graduate neuroscience courses in the Psychology Department. A doctoral degree is required. Applicants with a demonstrated commitment to expanding access to neuroscience through their program of research are encouraged to apply. To apply, go to http://www.jobs.fsu.edu (Job ID 58629) and submit: (1) a cover letter, (2) a curriculum vitae, (3) a research statement, (4) a teaching statement, and (5) up to four peer-reviewed papers, and (6) the names and contact information for writers for 3 letters of recommendation. Application review will begin on October 30, 2024. FSU is an Equal Opportunity/Access/Affirmative Action/Pro Disabled & Veteran Employer committed to enhancing the diversity of its faculty and students. Statement can be accessed at: https://hr.fsu.edu/sites/g/files/upcbnu2186/files/PDF/Publications/diversity/EEO_Statement.pdf. Inquiries about the position may be directed to Aaron Wilber, Search Chair, at awilber@fsu.edu.
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The Department of Psychology at Florida State University (FSU) invites applicants for a full-time tenure-track Assistant Professor position in BEHAVIORAL/SYSTEMS NEUROSCIENCE. Candidates with lines of laboratory animal research in any area of Neuroscience are encouraged to apply, particularly those who work to understand experience-dependent neural activity in the normal or diseased brain. Such research might include spatial navigation, decision making, and/or learning and memory. FSU is classified as a Carnegie R1 (Highest Research Activities) and ranks in the top 20 of National Public Universities (US News & World Reports). Candidates will find an outstanding research infrastructure with scientific colleagues housed in adjacent buildings, and relatively new laboratory space and vivarium. The department has a fully-staffed electronics and machine shop and faculty have access to core equipment and resources including surgical suites, a confocal microscope and common-use histology/molecular laboratory in the building and numerous other shared resources across the program facilities (see https://www.neuro.fsu.edu/rsrc/cores) and campus (e.g., 21T small animal magnet). Our department has outstanding resources, a favorable teaching load, a high level of research activity, and a collegial atmosphere. The neuroscience community across the state of Florida is also highly collaborative. More information about our department and the Program in Neuroscience can be found at www.psy.fsu.edu and www.neuro.fsu.edu. The University is in Tallahassee, the capital of Florida, where residents have access to a broad range of cultural amenities and an abundance of regional springs, lakes and rivers, and pristine beaches on the Gulf of Mexico. Faculty will be expected to maintain a strong research program, train graduate students in the Interdisciplinary Program in Neuroscience, and have the potential for excellent teaching and mentoring of diverse student populations for undergraduate and graduate neuroscience courses in the Psychology Department. A doctoral degree is required. Applicants with a demonstrated commitment to expanding access to neuroscience through their program of research are encouraged to apply. To apply, go to http://www.jobs.fsu.edu (Job ID 58629) and submit: (1) a cover letter, (2) a curriculum vitae, (3) a research statement, (4) a teaching statement, and (5) up to four peer-reviewed papers, and (6) the names and contact information for writers for 3 letters of recommendation. Application review will begin on October 30, 2024. FSU is an Equal Opportunity/Access/Affirmative Action/Pro Disabled & Veteran Employer committed to enhancing the diversity of its faculty and students. Statement can be accessed at: https://hr.fsu.edu/sites/g/files/upcbnu2186/files/PDF/Publications/diversity/EEO_Statement.pdf. Inquiries about the position may be directed to Aaron Wilber, Search Chair, at awilber@fsu.edu.
COSYNE 2025
The COSYNE 2025 conference was held in Montreal with post-conference workshops in Mont-Tremblant, continuing to provide a premier forum for computational and systems neuroscience. Attendees exchanged cutting-edge research in a single-track main meeting and in-depth specialized workshops, reflecting Cosyne’s mission to understand how neural systems function:contentReference[oaicite:6]{index=6}:contentReference[oaicite:7]{index=7}.
From spikes to factors: understanding large-scale neural computations
It is widely accepted that human cognition is the product of spiking neurons. Yet even for basic cognitive functions, such as the ability to make decisions or prepare and execute a voluntary movement, the gap between spikes and computation is vast. Only for very simple circuits and reflexes can one explain computations neuron-by-neuron and spike-by-spike. This approach becomes infeasible when neurons are numerous the flow of information is recurrent. To understand computation, one thus requires appropriate abstractions. An increasingly common abstraction is the neural ‘factor’. Factors are central to many explanations in systems neuroscience. Factors provide a framework for describing computational mechanism, and offer a bridge between data and concrete models. Yet there remains some discomfort with this abstraction, and with any attempt to provide mechanistic explanations above that of spikes, neurons, cell-types, and other comfortingly concrete entities. I will explain why, for many networks of spiking neurons, factors are not only a well-defined abstraction, but are critical to understanding computation mechanistically. Indeed, factors are as real as other abstractions we now accept: pressure, temperature, conductance, and even the action potential itself. I use recent empirical results to illustrate how factor-based hypotheses have become essential to the forming and testing of scientific hypotheses. I will also show how embracing factor-level descriptions affords remarkable power when decoding neural activity for neural engineering purposes.
COSYNE 2023
The COSYNE 2023 conference provided an inclusive forum for exchanging experimental and theoretical approaches to problems in systems neuroscience, continuing the tradition of bringing together the computational neuroscience community:contentReference[oaicite:5]{index=5}. The main meeting was held in Montreal followed by post-conference workshops in Mont-Tremblant, fostering intensive discussions and collaboration.
Extracting computational mechanisms from neural data using low-rank RNNs
An influential theory in systems neuroscience suggests that brain function can be understood through low-dimensional dynamics [Vyas et al 2020]. However, a challenge in this framework is that a single computational task may involve a range of dynamic processes. To understand which processes are at play in the brain, it is important to use data on neural activity to constrain models. In this study, we present a method for extracting low-dimensional dynamics from data using low-rank recurrent neural networks (lrRNNs), a highly expressive and understandable type of model [Mastrogiuseppe & Ostojic 2018, Dubreuil, Valente et al. 2022]. We first test our approach using synthetic data created from full-rank RNNs that have been trained on various brain tasks. We find that lrRNNs fitted to neural activity allow us to identify the collective computational processes and make new predictions for inactivations in the original RNNs. We then apply our method to data recorded from the prefrontal cortex of primates during a context-dependent decision-making task. Our approach enables us to assign computational roles to the different latent variables and provides a mechanistic model of the recorded dynamics, which can be used to perform in silico experiments like inactivations and provide testable predictions.
Signal in the Noise: models of inter-trial and inter-subject neural variability
The ability to record large neural populations—hundreds to thousands of cells simultaneously—is a defining feature of modern systems neuroscience. Aside from improved experimental efficiency, what do these technologies fundamentally buy us? I'll argue that they provide an exciting opportunity to move beyond studying the "average" neural response. That is, by providing dense neural circuit measurements in individual subjects and moments in time, these recordings enable us to track changes across repeated behavioral trials and across experimental subjects. These two forms of variability are still poorly understood, despite their obvious importance to understanding the fidelity and flexibility of neural computations. Scientific progress on these points has been impeded by the fact that individual neurons are very noisy and unreliable. My group is investigating a number of customized statistical models to overcome this challenge. I will mention several of these models but focus particularly on a new framework for quantifying across-subject similarity in stochastic trial-by-trial neural responses. By applying this method to noisy representations in deep artificial networks and in mouse visual cortex, we reveal that the geometry of neural noise correlations is a meaningful feature of variation, which is neglected by current methods (e.g. representational similarity analysis).
An open-source miniature two-photon microscope for large-scale calcium imaging in freely moving mice
Due to the unsuitability of benchtop imaging for tasks that require unrestrained movement, investigators have tried, for almost two decades, to develop miniature 2P microscopes-2P miniscopes–that can be carried on the head of freely moving animals. In this talk, I would first briefly review the development history of this technique, and then report our latest progress on developing the new generation of 2P miniscopes, MINI2P, that overcomes the limits of previous versions by both meeting requirements for fatigue-free exploratory behavior during extended recording periods and satisfying demands for further increasing the cell yield by an order of magnitude, to thousands of neurons. The performance and reliability of MINI2P are validated by recordings of spatially tuned neurons in three brain regions and in three behavioral assays. All information about MINI2P is open access, with instruction videos, code, and manuals on public repositories, and workshops will be organized to help new users getting started. MINI2P permits large-scale and high-resolution calcium imaging in freely-moving mice, and opens the door to investigating brain functions during unconstrained natural behaviors.
Invariant neural subspaces maintained by feedback modulation
This session is a double feature of the Cologne Theoretical Neuroscience Forum and the Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience of the Jülich Research Center.
The role of astroglia-neuron interactions in generation and spread of seizures
Astroglia-neuron interactions are involved in multiple processes, regulating development, excitability and connectivity of neural circuits. Accumulating number of evidences highlight a direct connection between aberrant astroglial genetics and physiology in various forms of epilepsies. Using zebrafish seizure models, we showed that neurons and astroglia follow different spatiotemporal dynamics during transitions from pre-ictal to ictal activity. We observed that during pre-ictal period neurons exhibit local synchrony and low level of activity, whereas astroglia exhibit global synchrony and high-level of calcium signals that are anti correlated with neural activity. Instead, generalized seizures are marked by a massive release of astroglial glutamate release as well as a drastic increase of astroglia and neuronal activity and synchrony across the entire brain. Knocking out astroglial glutamate transporters leads to recurrent spontaneous generalized seizures accompanied with massive astroglial glutamate release. We are currently using a combination of genetic and pharmacological approaches to perturb astroglial glutamate signalling and astroglial gap junctions to further investigate their role in generation and spreading of epileptic seizures across the brain.
Pynapple: a light-weight python package for neural data analysis - webinar + tutorial
In systems neuroscience, datasets are multimodal and include data-streams of various origins: multichannel electrophysiology, 1- or 2-p calcium imaging, behavior, etc. Often, the exact nature of data streams are unique to each lab, if not each project. Analyzing these datasets in an efficient and open way is crucial for collaboration and reproducibility. In this combined webinar and tutorial, Adrien Peyrache and Guillaume Viejo will present Pynapple, a Python-based data analysis pipeline for systems neuroscience. Designed for flexibility and versatility, Pynapple allows users to perform cross-modal neural data analysis via a common programming approach which facilitates easy sharing of both analysis code and data.
Pynapple: a light-weight python package for neural data analysis - webinar + tutorial
In systems neuroscience, datasets are multimodal and include data-streams of various origins: multichannel electrophysiology, 1- or 2-p calcium imaging, behavior, etc. Often, the exact nature of data streams are unique to each lab, if not each project. Analyzing these datasets in an efficient and open way is crucial for collaboration and reproducibility. In this combined webinar and tutorial, Adrien Peyrache and Guillaume Viejo will present Pynapple, a Python-based data analysis pipeline for systems neuroscience. Designed for flexibility and versatility, Pynapple allows users to perform cross-modal neural data analysis via a common programming approach which facilitates easy sharing of both analysis code and data.
COSYNE 2022
The annual Cosyne meeting provides an inclusive forum for the exchange of empirical and theoretical approaches to problems in systems neuroscience, in order to understand how neural systems function:contentReference[oaicite:2]{index=2}. The main meeting is single-track, with invited talks selected by the Executive Committee and additional talks and posters selected by the Program Committee based on submitted abstracts:contentReference[oaicite:3]{index=3}. The workshops feature in-depth discussion of current topics of interest in a small group setting:contentReference[oaicite:4]{index=4}.
Advancing Brain-Computer Interfaces by adopting a neural population approach
Brain-computer interfaces (BCIs) have afforded paralysed users “mental control” of computer cursors and robots, and even of electrical stimulators that reanimate their own limbs. Most existing BCIs map the activity of hundreds of motor cortical neurons recorded with implanted electrodes into control signals to drive these devices. Despite these impressive advances, the field is facing a number of challenges that need to be overcome in order for BCIs to become widely used during daily living. In this talk, I will focus on two such challenges: 1) having BCIs that allow performing a broad range of actions; and 2) having BCIs whose performance is robust over long time periods. I will present recent studies from our group in which we apply neuroscientific findings to address both issues. This research is based on an emerging view about how the brain works. Our proposal is that brain function is not based on the independent modulation of the activity of single neurons, but rather on specific population-wide activity patters —which mathematically define a “neural manifold”. I will provide evidence in favour of such a neural manifold view of brain function, and illustrate how advances in systems neuroscience may be critical for the clinical success of BCIs.
Metabolic and functional connectivity relate to distinct aspects of cognition
A major challenge of cognitive neuroscience is to understand how the brain as a network gives rise to our cognition. Simultaneous [18F]-fluorodeoxyglucose positron emission tomography functional magnetic resonance imaging (FDG-PET/fMRI) provides the opportunity to investigate brain connectivity not only via spatially distant, synchronous cerebrovascular hemodynamic responses (functional connectivity), but also glucose metabolism (metabolic connectivity). However, how these two modalities of brain connectivity differ in their relation to cognition is unknown. In this webinar, Dr Katharina Voigt will discuss recent findings demonstrating the advantage of simultaneous FDG-PET/fMRI in providing a more complete picture of the neural mechanisms underlying cognition, that calls for a combination of both modalities in future cognitive neuroscience. Dr Katharina Voigt is a Research Fellow within the Turner Institute for Brain and Mental Health, Monash University. Her research interests include systems neuroscience, simultaneous PET-MRI, and decision-making.
Chapter 1. Reconstructing history
PiVR: An affordable and versatile closed-loop platform to study unrestrained sensorimotor behavior
PiVR is a system that allows experimenters to immerse small animals into virtual realities. The system tracks the position of the animal and presents light stimulation according to predefined rules, thus creating a virtual landscape in which the animal can behave. By using optogenetics, we have used PiVR to present fruit fly larvae with virtual olfactory realities, adult fruit flies with a virtual gustatory reality and zebrafish larvae with a virtual light gradient. PiVR operates at high temporal resolution (70Hz) with low latencies (<30 milliseconds) while being affordable (<US$500) and easy to build (<6 hours). Through extensive documentation (www.PiVR.org), this tool was designed to be accessible to a wide public, from high school students to professional researchers studying systems neuroscience in academia.
Multisensory encoding of self-motion in the retrosplenial cortex and beyond
In order to successfully navigate through the environment, animals must accurately estimate the status of their motion with respect to the surrounding scene and objects. In this talk, I will present our recent work on how retrosplenial cortical (RSC) neurons combine vestibular and visual signals to reliably encode the direction and speed of head turns during passive motion and active navigation. I will discuss these data in the context of RSC long-range connectivity and further show our ongoing work on building population-level models of motion representation across cortical and subcortical networks.
Open-source tools for systems neuroscience
Open-source tools are gaining an increasing foothold in neuroscience. The rising complexity of experiments in systems neuroscience has led to a need for multiple parts of experiments to work together seamlessly. This means that open-source tools that freely interact with each other and can be understood and modified more easily allow scientists to conduct better experiments with less effort than closed tools. Open Ephys is an organization with team members distributed all around the world. Our mission is to advance our understanding of the brain by promoting community ownership of the tools we use to study it. We are making and distributing cutting edge tools that exploit modern technology to bring down the price and complexity of neuroscience experiments. A large component of this is to take tools that were developed in academic labs and helping with documentation, support, and distribution. More recently, we have been working on bringing high-quality manufacturing, distribution, warranty, and support to open source tools by partnering with OEPS in Portugal. We are now also establishing standards that make it possible to combine methods, such as miniaturized microscopes, electrode drive implants, and silicon probes seamlessly in one system. In the longer term, our development of new tools, interfaces and our standardization efforts have the goal of making it possible for scientists to easily run complex experiments that span from complex behaviors and tasks, multiple recording modalities, to easy access to data processing pipelines.
Bridging brain and cognition: A multilayer network analysis of brain structural covariance and general intelligence in a developmental sample of struggling learners
Network analytic methods that are ubiquitous in other areas, such as systems neuroscience, have recently been used to test network theories in psychology, including intelligence research. The network or mutualism theory of intelligence proposes that the statistical associations among cognitive abilities (e.g. specific abilities such as vocabulary or memory) stem from causal relations among them throughout development. In this study, we used network models (specifically LASSO) of cognitive abilities and brain structural covariance (grey and white matter) to simultaneously model brain-behavior relationships essential for general intelligence in a large (behavioral, N=805; cortical volume, N=246; fractional anisotropy, N=165), developmental (ages 5-18) cohort of struggling learners (CALM). We found that mostly positive, small partial correlations pervade both our cognitive and neural networks. Moreover, calculating node centrality (absolute strength and bridge strength) and using two separate community detection algorithms (Walktrap and Clique Percolation), we found convergent evidence that subsets of both cognitive and neural nodes play an intermediary role between brain and behavior. We discuss implications and possible avenues for future studies.
Fragility of the human connectome across the lifespan
The human brain network architecture can reveal crucial aspects of brain function and dysfunction. The topology of this network (known as the connectome) is shaped by a trade-off between wiring cost and network efficiency, and it has highly connected hub regions playing a prominent role in many brain disorders. By studying a landscape of plausible brain networks that preserve the wiring cost, fragile and resilient hubs can be identified. In this webinar, Dr Leonardo Gollo and Dr James Pang from Monash University will discuss this approach across the lifespan and some of its implications for neurodevelopmental and neurodegenerative diseases. Dr Leonardo Gollo is a Senior Research Fellow at the Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University. He holds an ARC Future Fellowship and his research interests include brain modelling, systems neuroscience, and connectomics. Dr James Pang is a Research Fellow at the Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University. His research interests are on combining neuroimaging and biophysical modelling to better understand the mechanisms of brain function in health and disease.
Finding the needle in the haystack – Functional circuit and network models for neuroscience
Start of the talk will be 17:15h (CEST). This session is a double feature of the Cologne Theoretical Neuroscience Forum and the BCCN Berlin.
Function and development of neuronal ensembles in zebrafish habenula
Brain Awareness Week @ IITGN
Using Systems Neuroscience Approaches to Understand Motor Learning & Recovery Post-Stroke
Exploring the relationship between the LFP signal and Behavioral States
This talk will focus on different aspects of the Local Field Potential (LFP) signal. Classically, LFP fluctuations are related to changes in the functional state of the cortex. Yet, the mechanisms linking LFP changes with the state of the cortex are not well understood. The presentation will start with a brief explanation of the main oscillatory components of the LFP signal, how these different oscillatory components are generated at cortical microcircuits, and how their dynamics can be studied across multiple areas. Thereafter, a case study of a patient with akinetic mutism will be presented, linking cortical states with the behavior of the patient, as well as some preliminary results about how the LF cortical microcircuit dynamic changes modulate different cortical states and how these changes are reflected in the LFP signal
Neural representation of pose and movement in parietal cortex and beyond
Jonathan Whitlock is an associate professor of neuroscience at the Kavli Institute for Systems Neuroscience in Trondheim, Norway. His group combines high-density single-unit recordings with silicone probes and sub-millimeter 3D tracking to study the cortical representation of pose and movement in freely behaving rats. The lecture will introduce his group’s work on neural tuning to pose and movement parietal and motor areas, and will include more recent findings from primary visual, auditory and somatosensory areas
Leveraging neural manifolds to advance brain-computer interfaces
Brain-computer interfaces (BCIs) have afforded paralysed users “mental control” of computer cursors and robots, and even of electrical stimulators that reanimate their own limbs. Most existing BCIs map the activity of hundreds of motor cortical neurons recorded with implanted electrodes into control signals to drive these devices. Despite these impressive advances, the field is facing a number of challenges that need to be overcome in order for BCIs to become widely used during daily living. In this talk, I will focus on two such challenges: 1) having BCIs that allow performing a broad range of actions; and 2) having BCIs whose performance is robust over long time periods. I will present recent studies from our group in which we apply neuroscientific findings to address both issues. This research is based on an emerging view about how the brain works. Our proposal is that brain function is not based on the independent modulation of the activity of single neurons, but rather on specific population-wide activity patters —which mathematically define a “neural manifold”. I will provide evidence in favour of such a neural manifold view of brain function, and illustrate how advances in systems neuroscience may be critical for the clinical success of BCIs.
Aging Brain Initiative Symposium: Cellular & Molecular Mechanisms of Neurodegeneration
The Aging Brain Initiative is an ambitious interdisciplinary effort by MIT focusing on understanding neurodegeneration and efforts to find hallmarks of aging, both in health and disease. The Initiative is broad, made up of scientists in several areas, including systems neuroscience, cell biology, engineering and computational biology, with core investigators from the Departments of Biology, Brain & Cognitive Sciences, Biological Engineering, and Computer Science & Artificial Intelligence Labs. "The theme of this symposium is Cellular & Molecular Mechanisms of Neurodegeneration.