Validation
validation
OpenNeuro FitLins GLM: An Accessible, Semi-Automated Pipeline for OpenNeuro Task fMRI Analysis
In this talk, I will discuss the OpenNeuro Fitlins GLM package and provide an illustration of the analytic workflow. OpenNeuro FitLins GLM is a semi-automated pipeline that reduces barriers to analyzing task-based fMRI data from OpenNeuro's 600+ task datasets. Created for psychology, psychiatry and cognitive neuroscience researchers without extensive computational expertise, this tool automates what is largely a manual process and compilation of in-house scripts for data retrieval, validation, quality control, statistical modeling and reporting that, in some cases, may require weeks of effort. The workflow abides by open-science practices, enhancing reproducibility and incorporates community feedback for model improvement. The pipeline integrates BIDS-compliant datasets and fMRIPrep preprocessed derivatives, and dynamically creates BIDS Statistical Model specifications (with Fitlins) to perform common mass univariate [GLM] analyses. To enhance and standardize reporting, it generates comprehensive reports which includes design matrices, statistical maps and COBIDAS-aligned reporting that is fully reproducible from the model specifications and derivatives. OpenNeuro Fitlins GLM has been tested on over 30 datasets spanning 50+ unique fMRI tasks (e.g., working memory, social processing, emotion regulation, decision-making, motor paradigms), reducing analysis times from weeks to hours when using high-performance computers, thereby enabling researchers to conduct robust single-study, meta- and mega-analyses of task fMRI data with significantly improved accessibility, standardized reporting and reproducibility.
Digital Traces of Human Behaviour: From Political Mobilisation to Conspiracy Narratives
Digital platforms generate unprecedented traces of human behaviour, offering new methodological approaches to understanding collective action, polarisation, and social dynamics. Through analysis of millions of digital traces across multiple studies, we demonstrate how online behaviours predict offline action: Brexit-related tribal discourse responds to real-world events, machine learning models achieve 80% accuracy in predicting real-world protest attendance from digital signals, and social validation through "likes" emerges as a key driver of mobilization. Extending this approach to conspiracy narratives reveals how digital traces illuminate psychological mechanisms of belief and community formation. Longitudinal analysis of YouTube conspiracy content demonstrates how narratives systematically address existential, epistemic, and social needs, while examination of alt-tech platforms shows how emotions of anger, contempt, and disgust correlate with violence-legitimating discourse, with significant differences between narratives associated with offline violence versus peaceful communities. This work establishes digital traces as both methodological innovation and theoretical lens, demonstrating that computational social science can illuminate fundamental questions about polarisation, mobilisation, and collective behaviour across contexts from electoral politics to conspiracy communities.
An Ecological and Objective Neural Marker of Implicit Unfamiliar Identity Recognition
We developed a novel paradigm measuring implicit identity recognition using Fast Periodic Visual Stimulation (FPVS) with EEG among 16 students and 12 police officers with normal face processing abilities. Participants' neural responses to a 1-Hz tagged oddball identity embedded within a 6-Hz image stream revealed implicit recognition with high-quality mugshots but not CCTV-like images, suggesting optimal resolution requirements. Our findings extend previous research by demonstrating that even unfamiliar identities can elicit robust neural recognition signatures through brief, repeated passive exposure. This approach offers potential for objective validation of face processing abilities in forensic applications, including assessment of facial examiners, Super-Recognisers, and eyewitnesses, potentially overcoming limitations of traditional behavioral assessment methods.
“A Focus on 3D Printed Lenses: Rapid prototyping, low-cost microscopy and enhanced imaging for the life sciences”
High-quality glass lenses are commonplace in the design of optical instrumentation used across the biosciences. However, research-grade glass lenses are often costly, delicate and, depending on the prescription, can involve intricate and lengthy manufacturing - even more so in bioimaging applications. This seminar will outline 3D printing as a viable low-cost alternative for the manufacture of high-performance optical elements, where I will also discuss the creation of the world’s first fully 3D printed microscope and other implementations of 3D printed lenses. Our 3D printed lenses were generated using consumer-grade 3D printers and pose a 225x materials cost-saving compared to glass optics. Moreover, they can be produced in any lab or home environment and offer great potential for education and outreach. Following performance validation, our 3D printed optics were implemented in the production of a fully 3D printed microscope and demonstrated in histological imaging applications. We also applied low-cost fabrication methods to exotic lens geometries to enhance resolution and contrast across spatial scales and reveal new biological structures. Across these applications, our findings showed that 3D printed lenses are a viable substitute for commercial glass lenses, with the advantage of being relatively low-cost, accessible, and suitable for use in optical instruments. Combining 3D printed lenses with open-source 3D printed microscope chassis designs opens the doors for low-cost applications for rapid prototyping, low-resource field diagnostics, and the creation of cheap educational tools.
A Novel Neurophysiological Approach to Assessing Distractibility within the General Population
Vulnerability to distraction varies across the general population and significantly affects one’s capacity to stay focused on and successfully complete the task at hand, whether at school, on the road, or at work. In this talk, I will begin by discussing how distractibility is typically assessed in the literature and introduce our innovative ERP approach to measuring it. Since distractibility is a cardinal symptom of ADHD, I will introduce its most widely used paper-and-pencil screening tool for the general population as external validation. Following that, I will present the Load Theory of Attention and explain how we used perceptual load to test the reliability of our neural marker of distractibility. Finally, I will highlight potential future applications of this marker in clinical and educational settings.
Brain Emulation Challenge Workshop
Brain Emulation Challenge workshop will tackle cutting-edge topics such as ground-truthing for validation, leveraging artificial datasets generated from virtual brain tissue, and the transformative potential of virtual brain platforms, such as applied to the forthcoming Brain Emulation Challenge.
Brain Emulation Challenge Workshop
Brain Emulation Challenge workshop will tackle cutting-edge topics such as ground-truthing for validation, leveraging artificial datasets generated from virtual brain tissue, and the transformative potential of virtual brain platforms, such as applied to the forthcoming Brain Emulation Challenge.
Brain Emulation Challenge Workshop
Brain Emulation Challenge workshop will tackle cutting-edge topics such as ground-truthing for validation, leveraging artificial datasets generated from virtual brain tissue, and the transformative potential of virtual brain platforms, such as applied to the forthcoming Brain Emulation Challenge.
Brain Emulation Challenge Workshop
Brain Emulation Challenge workshop will tackle cutting-edge topics such as ground-truthing for validation, leveraging artificial datasets generated from virtual brain tissue, and the transformative potential of virtual brain platforms, such as applied to the forthcoming Brain Emulation Challenge.
Brain Emulation Challenge Workshop
Brain Emulation Challenge workshop will tackle cutting-edge topics such as ground-truthing for validation, leveraging artificial datasets generated from virtual brain tissue, and the transformative potential of virtual brain platforms, such as applied to the forthcoming Brain Emulation Challenge.
Touch in romantic relationships
Responsive behavior is crucial to relationship quality and well-being across a variety of interpersonal domains. In this talk I will share research from studies in which we investigate how responsiveness is conveyed nonverbally in the context of male friendships and in heterosexual romantic relationships, largely focusing on affectionate touch as a nonverbal signal of understanding, validation, and care
Brain network communication: concepts, models and applications
Understanding communication and information processing in nervous systems is a central goal of neuroscience. Over the past two decades, advances in connectomics and network neuroscience have opened new avenues for investigating polysynaptic communication in complex brain networks. Recent work has brought into question the mainstay assumption that connectome signalling occurs exclusively via shortest paths, resulting in a sprawling constellation of alternative network communication models. This Review surveys the latest developments in models of brain network communication. We begin by drawing a conceptual link between the mathematics of graph theory and biological aspects of neural signalling such as transmission delays and metabolic cost. We organize key network communication models and measures into a taxonomy, aimed at helping researchers navigate the growing number of concepts and methods in the literature. The taxonomy highlights the pros, cons and interpretations of different conceptualizations of connectome signalling. We showcase the utility of network communication models as a flexible, interpretable and tractable framework to study brain function by reviewing prominent applications in basic, cognitive and clinical neurosciences. Finally, we provide recommendations to guide the future development, application and validation of network communication models.
Diagnosing dementia using Fastball neurocognitive assessment
Fastball is a novel, fast, passive biomarker of cognitive function, that uses cheap, scalable electroencephalography (EEG) technology. It is sensitive to early dementia; language, education, effort and anxiety independent and can be used in any setting including patients’ homes. It can capture a range of cognitive functions including semantic memory, recognition memory, attention and visual function. We have shown that Fastball is sensitive to cognitive dysfunction in Alzheimer’s disease and Mild Cognitive Impairment, with data collected in patients’ homes using low-cost portable EEG. We are now preparing for significant scale-up and the validation of Fastball in primary and secondary care.
The Effects of Negative Emotions on Mental Representation of Faces
Face detection is an initial step of many social interactions involving a comparison between a visual input and a mental representation of faces, built from previous experience. Whilst emotional state was found to affect the way humans attend to faces, little research has explored the effects of emotions on the mental representation of faces. Here, we examined the specific perceptual modulation of geometric properties of the mental representations associated with state anxiety and state depression on face detection, and to compare their emotional expression. To this end, we used an adaptation of the reverse correlation technique inspired by Gosselin and Schyns’, (2003) ‘Superstitious Approach’, to construct visual representations of observers’ mental representations of faces and to relate these to their mental states. In two sessions, on separate days, participants were presented with ‘colourful’ noise stimuli and asked to detect faces, which they were told were present. Based on the noise fragments that were identified as faces, we reconstructed the pictorial mental representation utilised by each participant in each session. We found a significant correlation between the size of the mental representation of faces and participants’ level of depression. Our findings provide a preliminary insight about the way emotions affect appearance expectation of faces. To further understand whether the facial expressions of participants’ mental representations reflect their emotional state, we are conducting a validation study with a group of naïve observers who are asked to classify the reconstructed face images by emotion. Thus, we assess whether the faces communicate participants’ emotional states to others.
Emotions and Partner Phubbing: The Role of Understanding and Validation in Predicting Anger and Loneliness
Interactions between romantic partners may be disturbed by problematic mobile phone use, i.e., phubbing. Research shows that phubbing reduces the ability to be responsive, but emotional aspects of phubbing, such as experiences of anger and loneliness, have not been explored. Anger has been linked to partner blame in negative social interactions, whereas loneliness has been associated with low social acceptance. Moreover, two aspects of partner responsiveness, understanding and validation, refer to the ability to recognize partner’s perspective and convey acceptance of their point of view, respectively. High understanding and validation by partner have been found to prevent from negative affect during social interaction. The impact of understanding and validation on emotions has not been investigated in the context of phubbing, therefore we posit the following exploratory hypotheses. (1) Participants will report higher levels of anger and loneliness on days with phubbing by partner, compared to days without; (2) understanding and validation will moderate the relationship between phubbing intensity and levels of anger and loneliness. We conducted a daily diary study over seven days. Based on a sample of 133 participants in intimate relationships and living with their partners, we analyzed the nested within and between-person data using multilevel models. Participants reported higher levels of anger and loneliness on days they experienced phubbing. Both, understanding and validation, buffer the relationship between phubbing intensity and negative experiences, and the interaction effects indicate certain nuances between the two constructs. Our research provides a unique insight into how specific mechanisms related to couple interactions may explain experiences of anger and loneliness.
NMC4 Short Talk: Decoding finger movements from human posterior parietal cortex
Restoring hand function is a top priority for individuals with tetraplegia. This challenge motivates considerable research on brain-computer interfaces (BCIs), which bypass damaged neural pathways to control paralyzed or prosthetic limbs. Here, we demonstrate the BCI control of a prosthetic hand using intracortical recordings from the posterior parietal cortex (PPC). As part of an ongoing clinical trial, two participants with cervical spinal cord injury were each implanted with a 96-channel array in the left PPC. Across four sessions each, we recorded neural activity while they attempted to press individual fingers of the contralateral (right) hand. Single neurons modulated selectively for different finger movements. Offline, we accurately classified finger movements from neural firing rates using linear discriminant analysis (LDA) with cross-validation (accuracy = 90%; chance = 17%). Finally, the participants used the neural classifier online to control all five fingers of a BCI hand. Online control accuracy (86%; chance = 17%) exceeded previous state-of-the-art finger BCIs. Furthermore, offline, we could classify both flexion and extension of the right fingers, as well as flexion of all ten fingers. Our results indicate that neural recordings from PPC can be used to control prosthetic fingers, which may help contribute to a hand restoration strategy for people with tetraplegia.
Microbiota in the health of the nervous system and the response to stress
Microbes have shaped the evolution of eukaryotes and contribute significantly to the physiology and behavior of animals. Some of these traits are inherited by the progenies. Despite the vast importance of microbe-host communication, we still do not know how bacteria change short term traits or long-term decisions in individuals or communities. In this seminar I will present our work on how commensal and pathogenic bacteria impact specific neuronal phenotypes and decision making. The traits we specifically study are the degeneration and regeneration of neurons and survival behaviors in animals. We use the nematode Caenorhabditis elegans and its dietary bacteria as model organisms. Both nematode and bacteria are genetically tractable, simplifying the detection of specific molecules and their effect on measurable characteristics. To identify these molecules we analyze their genomes, transcriptomes and metabolomes, followed by functional in vivo validation. We found that specific bacterial RNAs and bacterially produced neurotransmitters are key to trigger a survival behavioral and neuronal protection respectively. While RNAs cause responses that lasts for many generations we are still investigating whether bacterial metabolites are capable of inducing long lasting phenotypic changes.
Digitization as a driving force for collaboration in neuroscience
Many of the collaborations we encounter in our scientific careers are centered on a common idea that can be associated with certain resources, such as a dataset, an algorithm, or a model. All partners in a collaboration need to develop a common understanding of these resources, and need to be able to access them in a simple and unambiguous manner in order to avoid incorrect conclusions especially in highly cross-disciplinary contexts. While digital computers have entered to assist scientific workflows in experiment and simulation for many decades, the high degree of heterogeneity in the field had led to a scattered landscape of highly customized, lab-internal solutions to organizing and managing the resources on a project-by-project basis. Only with the availability of modern technologies such as the semantic web, platforms for collaborative coding or the development of data standards overarching different disciplines, we have tools at our disposal to make resources increasingly more accessible, understandable, and usable. However, without overarching standardization efforts and adaptation of such technologies to the workflows and needs of individual researchers, their adoption by the neuroscience community will be impeded. From the perspective of computational neuroscience, which is inherently dependent on leveraging data and methods across the field of neuroscience for inspiration and validation, I will outline my view on past and present developments towards a more rigorous use of digital resources and how they improved collaboration, and introduce emerging initiatives to support this process in the future (e.g., EBRAINS http://ebrains.eu, NFDI-Neuro http://www.nfdi-neuro.de).
The Jena Voice Learning and Memory Test (JVLMT)
The ability to recognize someone’s voice spans a broad spectrum with phonagnosia on the low end and super recognition at the high end. Yet there is no standardized test to measure the individual ability to learn and recognize newly-learnt voices with samples of speech-like phonetic variability. We have developed the Jena Voice Learning and Memory Test (JVLMT), a 20 min-test based on item response theory and applicable across different languages. The JVLMT consists of three phases in which participants are familiarized with eight speakers in two stages and then perform a three-alternative forced choice recognition task, using pseudo sentences devoid of semantic content. Acoustic (dis)similarity analyses were used to create items with different levels of difficulty. Test scores are based on 22 Rasch-conform items. Items were selected and validated in online studies based on 232 and 454 participants, respectively. Mean accuracy is 0.51 with an SD of .18. The JVLMT showed high and moderate correlations with convergent validation tests (Bangor Voice Matching Test; Glasgow Voice Memory Test) and a weak correlation with a discriminant validation test (Digit Span). Empirical (marginal) reliability is 0.66. Four participants with super recognition (at least 2 SDs above the mean) and 7 participants with phonagnosia (at least 2 SDs below the mean) were identified. The JVLMT is a promising screen too for voice recognition abilities in a scientific and neuropsychological context.
Hebbian learning, its inference, and brain oscillation
Despite the recent success of deep learning in artificial intelligence, the lack of biological plausibility and labeled data in natural learning still poses a challenge in understanding biological learning. At the other extreme lies Hebbian learning, the simplest local and unsupervised one, yet considered to be computationally less efficient. In this talk, I would introduce a novel method to infer the form of Hebbian learning from in vivo data. Applying the method to the data obtained from the monkey inferior temporal cortex for the recognition task indicates how Hebbian learning changes the dynamic properties of the circuits and may promote brain oscillation. Notably, recent electrophysiological data observed in rodent V1 showed that the effect of visual experience on direction selectivity was similar to that observed in monkey data and provided strong validation of asymmetric changes of feedforward and recurrent synaptic strengths inferred from monkey data. This may suggest a general learning principle underlying the same computation, such as familiarity detection across different features represented in different brain regions.
Cognitive Psychometrics: Statistical Modeling of Individual Differences in Latent Processes
Many psychological theories assume that qualitatively different cognitive processes can result in identical responses. Multinomial processing tree (MPT) models allow researchers to disentangle latent cognitive processes based on observed response frequencies. Recently, MPT models have been extended to explicitly account for participant and item heterogeneity. These hierarchical Bayesian MPT models provide the opportunity to connect two traditionally isolated disciplines. Whereas cognitive psychology has often focused on the experimental validation of MPT model parameters on the group level, psychometrics provides the necessary concepts and tools for measuring differences in MPT parameters on the item or person level. Moreover, MPT parameters can be regressed on covariates to model latent processes as a function of personality traits or other person characteristics.
Contextual inference underlies the learning of sensorimotor repertoires
Humans spend a lifetime learning, storing and refining a repertoire of motor memories. However, it is unknown what principle underlies the way our continuous stream of sensori-motor experience is segmented into separate memories and how we adapt and use this growing repertoire. Here we develop a principled theory of motor learning based on the key insight that memory creation, updating, and expression are all controlled by a single computation – contextual inference. Unlike dominant theories of single-context learning, our repertoire-learning model accounts for key features of motor learning that had no unified explanation and predicts novel phenomena, which we confirm experimentally. These results suggest that contextual inference is the key principle underlying how a diverse set of experiences is reflected in motor behavior.
Train/test behavioral cross-validation reveals neural correlates in mice
COSYNE 2025
Comparative transcriptome profiling of multiple human induced pluripotent stem cell-derived sensory neuron populations and functional validation of pain targets on automated patch clamp systems
FENS Forum 2024
Cross-validation under different sensory conditions reveals the practical validity of the MVUE model
FENS Forum 2024
Integrating different approaches for establishing a multi-scale functional validation platform for RNA-based drugs in the CNS (MULTIVAL)
FENS Forum 2024
Statistics versus animal welfare: Validation of the experimental unit in the focus of 3R
FENS Forum 2024
Stratification of ALS progression by a combined motor and behavioural tracking approach for preclinical drug validation
FENS Forum 2024
Validation of template-based attenuation correction for in vivo quantification of the serotonin transporter using positron emission tomography
FENS Forum 2024
Validation of portable, dry electrode-based electroencephalography device for application in brain–computer interface solutions
FENS Forum 2024