Topic: Comparative

Seminar
31 seminars
Conference
1 conference
Conference

SICB 2027

Pittsburgh, PA, USA
Jan 3, 2027

Annual meeting of the Society for Integrative and Comparative Biology at the David L. Lawrence Convention Center in Pittsburgh, PA, spanning research across integrative and comparative biology.

SeminarNeuroscienceRecording

Go with the visual flow: circuit mechanisms for gaze control during locomotion

Eugenia Chiappe
Champalimaud Foundation
Sep 12, 2025
SeminarVision ScienceRecording

Seeing a changing world through the eyes of coral fishes

Fabio Cortesi
Queensland University
Jun 26, 2025
SeminarDevelopmental Neuroscience

Developmental and evolutionary perspectives on thalamic function

Dr. Bruno Averbeck
National Institute of Mental Health, Maryland, USA
Jun 11, 2025

Brain organization and function is a complex topic. We are good at establishing correlates of perception and behavior across forebrain circuits, as well as manipulating activity in these circuits to affect behavior. However, we still lack good models for the large-scale organization and function of the forebrain. What are the contributions of the cortex, basal ganglia, and thalamus to behavior? In addressing these questions, we often ascribe function to each area as if it were an independent processing unit. However, we know from the anatomy that the cortex, basal ganglia, and thalamus, are massively interconnected in a large network. One way to generate insight into these questions is to consider the evolution and development of forebrain systems. In this talk, I will discuss the developmental and evolutionary (comparative anatomy) data on the thalamus, and how it fits within forebrain networks. I will address questions including, when did the thalamus appear in evolution, how is the thalamus organized across the vertebrate lineage, and how can the change in the organization of forebrain networks affect behavioral repertoires.

SeminarElectrophysiology

Beyond Homogeneity: Characterizing Brain Disorder Heterogeneity through EEG and Normative Modeling

Mahmoud Hassan
Founder and CEO of MINDIG, Rennes, France. Adjunct professor, Reykjavik University, Reykjavik, Iceland.
Oct 9, 2024

Electroencephalography (EEG) has been thoroughly studied for decades in psychiatry research. Yet its integration into clinical practice as a diagnostic/prognostic tool remains unachieved. We hypothesize that a key reason is the underlying patient's heterogeneity, overlooked in psychiatric EEG research relying on a case-control approach. We combine HD-EEG with normative modeling to quantify this heterogeneity using two well-established and extensively investigated EEG characteristics -spectral power and functional connectivity- across a cohort of 1674 patients with attention-deficit/hyperactivity disorder, autism spectrum disorder, learning disorder, or anxiety, and 560 matched controls. Normative models showed that deviations from population norms among patients were highly heterogeneous and frequency-dependent. Deviation spatial overlap across patients did not exceed 40% and 24% for spectral and connectivity, respectively. Considering individual deviations in patients has significantly enhanced comparative analysis, and the identification of patient-specific markers has demonstrated a correlation with clinical assessments, representing a crucial step towards attaining precision psychiatry through EEG.

SeminarVision ScienceRecording

Retinal Photoreceptor Diversity Across Mammals

Leo Peichl
Goethe University Frankfurt
Jun 3, 2024
SeminarCell BiologyRecording

Molecular Characterization of Retinal Cell Types: Insights into Evolutionary Origins and Regional Specializations

Yirong Peng
UCLA Stein Eye Institute
Mar 4, 2024
SeminarNeuroscience

‘Going South!’ Comparative mitochondrial biology in ageing and neurodegeneration

Lisa Chakrabarti
University of Nottingham, UK
Dec 14, 2023
SeminarGenomicsRecording

Comparative transcriptomics of retinal cell types

Karthik Shekhar
University of California, Berkeley
Jul 24, 2023
SeminarCognition

Spatial matching tasks for insect minds: relational similarity in bumblebees

Gema Martin-Ordas
University of Stirling
Apr 6, 2023

Understanding what makes human unique is a fundamental research drive for comparative psychologists. Cognitive abilities such as theory of mind, cooperation or mental time travel have been considered uniquely human. Despite empirical evidence showing that animals other than humans are able (to some extent) of these cognitive achievements, findings are still heavily contested. In this context, being able to abstract relations of similarity has also been considered one of the hallmarks of human cognition. While previous research has shown that other animals (e.g., primates) can attend to relational similarity, less is known about what invertebrates can do. In this talk, I will present a series of spatial matching tasks that previously were used with children and great apes and that I adapted for use with wild-caught bumblebees. The findings from these studies suggest striking similarities between vertebrates and invertebrates in their abilities to attend to relational similarity.

SeminarCognitionRecording

Verb metaphors are processed as analogies

Daniel King
Northwestern University
Mar 9, 2023

Metaphor is a pervasive phenomenon in language and cognition. To date, the vast majority of psycholinguistic research on metaphor has focused on noun-noun metaphors of the form An X is a Y (e.g., My job is a jail). Yet there is evidence that verb metaphor (e.g., I sailed through my exams) is more common. Despite this, comparatively little work has examined how verb metaphors are processed. In this talk, I will propose a novel account for verb metaphor comprehension: verb metaphors are understood in the same way that analogies are—as comparisons processed via structure-mapping. I will discuss the predictions that arise from applying the analogical framework to verb metaphor and present a series of experiments showing that verb metaphoric extension is consistent with those predictions.

SeminarNeuroscienceRecording

Sampling the environment with body-brain rhythms

Antonio Criscuolo
Maastricht University
Jan 25, 2023

Since Darwin, comparative research has shown that most animals share basic timing capacities, such as the ability to process temporal regularities and produce rhythmic behaviors. What seems to be more exclusive, however, are the capacities to generate temporal predictions and to display anticipatory behavior at salient time points. These abilities are associated with subcortical structures like basal ganglia (BG) and cerebellum (CE), which are more developed in humans as compared to nonhuman animals. In the first research line, we investigated the basic capacities to extract temporal regularities from the acoustic environment and produce temporal predictions. We did so by adopting a comparative and translational approach, thus making use of a unique EEG dataset including 2 macaque monkeys, 20 healthy young, 11 healthy old participants and 22 stroke patients, 11 with focal lesions in the BG and 11 in the CE. In the second research line, we holistically explore the functional relevance of body-brain physiological interactions in human behavior. Thus, a series of planned studies investigate the functional mechanisms by which body signals (e.g., respiratory and cardiac rhythms) interact with and modulate neurocognitive functions from rest and sleep states to action and perception. This project supports the effort towards individual profiling: are individuals’ timing capacities (e.g., rhythm perception and production), and general behavior (e.g., individual walking and speaking rates) influenced / shaped by body-brain interactions?

SeminarCognitionRecording

Roots of Analogy

Edward Wasserman
The University of Iowa
Jan 12, 2023

Can nonhuman animals perceive the relation-between-relations? This intriguing question has been studied over the last 40 years; nonetheless, the extent to which nonhuman species can do so remains controversial. Here, I review empirical evidence suggesting that pigeons, parrots, crows, and baboons join humans in reliably acquiring and transferring relational matching-to-sample (RMTS). Many theorists consider that RMTS captures the essence of analogy, because basic to analogy is appreciating the ‘relation between relations.’ Factors affecting RMTS performance include: prior training experience, the entropy of the sample stimulus, and whether the items that serve as sample stimuli can also serve as choice stimuli.

SeminarEthology

Adaptation via innovation in the animal kingdom

Kata Horváth
Eötvös Loránd University & Lund University
Nov 24, 2022

Over the course of evolution, the human race has achieved a number of remarkable innovations, that have enabled us to adapt to and benefit from the environment ever more effectively. The ongoing environmental threats and health disasters of our world have now made it crucial to understand the cognitive mechanisms behind innovative behaviours. In my talk, I will present two research projects with examples of innovation-based behavioural adaptation from the taxonomic kingdom of animals, serving as a comparative psychological model for mapping the evolution of innovation. The first project focuses on the challenge of overcoming physical disability. In this study, we investigated an injured kea (Nestor notabilis) that exhibits an efficient, intentional, and innovative tool-use behaviour to compensate his disability, showing evidence for innovation-based adaptation to a physical disability in a non-human species. The second project focuses on the evolution of fire use from a cognitive perspective. Fire has been one of the most dominant ecological forces in human evolution; however, it is still unknown what capabilities and environmental factors could have led to the emergence of fire use. In the core study of this project, we investigated a captive population of Japanese macaques (Macaca fuscata) that has been regularly exposed to campfires during the cold winter months for over 60 years. Our results suggest that macaques are able to take advantage of the positive effects of fire while avoiding the dangers of flames and hot ashes, and exhibit calm behaviour around the bonfire. In addition, I will present a research proposal targeting the foraging behaviour of predatory birds in parts of Australia frequently affected by bushfires. Anecdotal reports suggest that some birds use burning sticks to spread the flames, a behaviour that has not been scientifically observed and evaluated. In summary, the two projects explore innovative behaviours along three different species groups, three different habitats, and three different ecological drivers, providing insights into the cognitive and behavioural mechanisms of adaptation through innovation.

SeminarComputational NeuroscienceRecording

Mouse visual cortex as a limited resource system that self-learns an ecologically-general representation

Aran Nayebi
MIT
Nov 2, 2022

Studies of the mouse visual system have revealed a variety of visual brain areas in a roughly hierarchical arrangement, together with a multitude of behavioral capacities, ranging from stimulus-reward associations, to goal-directed navigation, and object-centric discriminations. However, an overall understanding of the mouse’s visual cortex organization, and how this organization supports visual behaviors, remains unknown. Here, we take a computational approach to help address these questions, providing a high-fidelity quantitative model of mouse visual cortex. By analyzing factors contributing to model fidelity, we identified key principles underlying the organization of mouse visual cortex. Structurally, we find that comparatively low-resolution and shallow structure were both important for model correctness. Functionally, we find that models trained with task-agnostic, unsupervised objective functions, based on the concept of contrastive embeddings were substantially better than models trained with supervised objectives. Finally, the unsupervised objective builds a general-purpose visual representation that enables the system to achieve better transfer on out-of-distribution visual, scene understanding and reward-based navigation tasks. Our results suggest that mouse visual cortex is a low-resolution, shallow network that makes best use of the mouse’s limited resources to create a light-weight, general-purpose visual system – in contrast to the deep, high-resolution, and more task-specific visual system of primates.

SeminarDevelopmental Neuroscience

Retinal neurogenesis and lamination: What to become, where to become it and how to move from there!

Caren Norden
Instituto Gulbenkian de Ciência
Mar 25, 2022

The vertebrate retina is an important outpost of the central nervous system, responsible for the perception and transmission of visual information. It consists of five different types of neurons that reproducibly laminate into three layers, a process of crucial importance for the organ’s function. Unsurprisingly, impaired fate decisions as well as impaired neuronal migrations and lamination lead to impaired retinal function. However, how processes are coordinated at the cellular and tissue level and how variable or robust retinal formation is, is currently still underexplored. In my lab, we aim to shed light on these questions from different angles, studying on the one hand differentiation phenomena and their variability and on the other hand the downstream migration and lamination phenomena. We use zebrafish as our main model system due to its excellent possibilities for live imaging and quantitative developmental biology. More recently we also started to use human retinal organoids as a comparative system. We further employ cross disciplinary approaches to address these issues combining work of cell and developmental biology, biomechanics, theory and computer science. Together, this allows us to integrate cell with tissue-wide phenomena and generate an appreciation of the reproducibility and variability of events.

SeminarComputational NeuroscienceRecording

Network science and network medicine: New strategies for understanding and treating the biological basis of mental ill-health

Petra Vértes
Department of Psychiatry, University of Cambridge
Mar 15, 2022

The last twenty years have witnessed extraordinarily rapid progress in basic neuroscience, including breakthrough technologies such as optogenetics, and the collection of unprecedented amounts of neuroimaging, genetic and other data relevant to neuroscience and mental health. However, the translation of this progress into improved understanding of brain function and dysfunction has been comparatively slow. As a result, the development of therapeutics for mental health has stagnated too. One central challenge has been to extract meaning from these large, complex, multivariate datasets, which requires a shift towards systems-level mathematical and computational approaches. A second challenge has been reconciling different scales of investigation, from genes and molecules to cells, circuits, tissue, whole-brain, and ultimately behaviour. In this talk I will describe several strands of work using mathematical, statistical, and bioinformatic methods to bridge these gaps. Topics will include: using artificial neural networks to link the organization of large-scale brain connectivity to cognitive function; using multivariate statistical methods to link disease-related changes in brain networks to the underlying biological processes; and using network-based approaches to move from genetic insights towards drug discovey. Finally, I will discuss how simple organisms such as C. elegans can serve to inspire, test, and validate new methods and insights in networks neuroscience.

SeminarCognitionRecording

Do Capuchin Monkeys, Chimpanzees and Children form Overhypotheses from Minimal Input? A Hierarchical Bayesian Modelling Approach

Elisa Felsche
Max Planck Institute for Evolutionary Anthropology
Mar 10, 2022

Abstract concepts are a powerful tool to store information efficiently and to make wide-ranging predictions in new situations based on sparse data. Whereas looking-time studies point towards an early emergence of this ability in human infancy, other paradigms like the relational match to sample task often show a failure to detect abstract concepts like same and different until the late preschool years. Similarly, non-human animals have difficulties solving those tasks and often succeed only after long training regimes. Given the huge influence of small task modifications, there is an ongoing debate about the conclusiveness of these findings for the development and phylogenetic distribution of abstract reasoning abilities. Here, we applied the concept of “overhypotheses” which is well known in the infant and cognitive modeling literature to study the capabilities of 3 to 5-year-old children, chimpanzees, and capuchin monkeys in a unified and more ecologically valid task design. In a series of studies, participants themselves sampled reward items from multiple containers or witnessed the sampling process. Only when they detected the abstract pattern governing the reward distributions within and across containers, they could optimally guide their behavior and maximize the reward outcome in a novel test situation. We compared each species’ performance to the predictions of a probabilistic hierarchical Bayesian model capable of forming overhypotheses at a first and second level of abstraction and adapted to their species-specific reward preferences.

SeminarCognitionRecording

NMC4 Keynote: Formation and update of sensory priors in working memory and perceptual decision making tasks

Athena Akrami
University College London
Dec 2, 2021

The world around us is complex, but at the same time full of meaningful regularities. We can detect, learn and exploit these regularities automatically in an unsupervised manner i.e. without any direct instruction or explicit reward. For example, we effortlessly estimate the average tallness of people in a room, or the boundaries between words in a language. These regularities and prior knowledge, once learned, can affect the way we acquire and interpret new information to build and update our internal model of the world for future decision-making processes. Despite the ubiquity of passively learning from the structured information in the environment, the mechanisms that support learning from real-world experience are largely unknown. By combing sophisticated cognitive tasks in human and rats, neuronal measurements and perturbations in rat and network modelling, we aim to build a multi-level description of how sensory history is utilised in inferring regularities in temporally extended tasks. In this talk, I will specifically focus on a comparative rat and human model, in combination with neural network models to study how past sensory experiences are utilized to impact working memory and decision making behaviours.

SeminarBrain ImagingRecording

Get more from your ISH brain slices with Stalefish

Seb James
Department of Psychology, The University of Sheffield
Oct 13, 2021

The standard method for staining structures in the brain is to slice the brain into 2D sections. Each slice is treated using a technique such as in-situ hybridization to examine the spatial expression of a particular molecule at a given developmental timepoint. Depending on the brain structures being studied, slices can be made coronally, sagitally, or at any angle that is thought to be optimal for analysis. However, assimilating the information presented in the 2D slice images to gain quantitiative and informative 3D expression patterns is challenging. Even if expression levels are presented as voxels, to give 3D expression clouds, it can be difficult to compare expression across individuals and analysing such data requires significant expertise and imagination. In this talk, I will describe a new approach to examining histology slices, in which the user defines the brain structure of interest by drawing curves around it on each slice in a set and the depth of tissue from which to sample expression. The sampled 'curves' are then assembled into a 3D surface, which can then be transformed onto a common reference frame for comparative analysis. I will show how other neuroscientists can obtain and use the tool, which is called Stalefish, to analyse their own image data with no (or minimal) changes to their slice preparation workflow.

SeminarBrain Imaging

Age-related dedifferentiation across representational levels and their relation to memory performance

Malte Kobelt
Ruhr-University Bochum
Oct 7, 2021

Episodic memory performance decreases with advancing age. According to theoretical models, such memory decline might be a consequence of age-related reductions in the ability to form distinct neural representations of our past. In this talk, I want to present our new age-comparative fMRI study investigating age-related neural dedifferentiation across different representational levels. By combining univariate analyses and searchlight pattern similarity analyses, we found that older adults show reduced category selective processing in higher visual areas, less specific item representations in occipital regions and less stable item representations. Dedifferentiation on all these representational levels was related to memory performance, with item specificity being the strongest contributor. Overall, our results emphasize that age-related dedifferentiation can be observed across the entire cortical hierarchy which may selectively impair memory performance depending on the memory task.

SeminarBehavioral EcologyRecording

Predator-prey interactions: the avian visual sensory perspective

Esteban Fernandez
Purdue University
Oct 4, 2021

My research interests are centered on animal ecology, and more specifically include the following areas: visual ecology, behavioral ecology, and conservation biology, as well as the interactions between them. My research is question-driven. I answer my questions in a comprehensive manner, using a combination of empirical, theoretical, and comparative approaches. My model species are usually birds, but I have also worked with fish, mammals, amphibians, and insects. ​I was fortunate to enrich my education by attending Universities in different parts of the world. I did my undergraduate, specialized in ecology and biodiversity, at the "Universidad Nacional de Cordoba", Argentina. My Ph.D. was in animal ecology and conservation biology at the "Universidad Complutense de Madrid", Spain. My two post-docs were focused on behavioral ecology; the first one at University of Oxford (United Kingdom), and the second one at University of Minnesota (USA). I was an Assistant Professor at California State University Long Beach for almost six years. I am now a Full Professor of Biological Sciences at Purdue University.

SeminarMachine LearningRecording

Learning the structure and investigating the geometry of complex networks

Robert Peach and Alexis Arnaudon
Imperial College
Sep 25, 2021

Networks are widely used as mathematical models of complex systems across many scientific disciplines, and in particular within neuroscience. In this talk, we introduce two aspects of our collaborative research: (1) machine learning and networks, and (2) graph dimensionality. Machine learning and networks. Decades of work have produced a vast corpus of research characterising the topological, combinatorial, statistical and spectral properties of graphs. Each graph property can be thought of as a feature that captures important (and sometimes overlapping) characteristics of a network. We have developed hcga, a framework for highly comparative analysis of graph data sets that computes several thousands of graph features from any given network. Taking inspiration from hctsa, hcga offers a suite of statistical learning and data analysis tools for automated identification and selection of important and interpretable features underpinning the characterisation of graph data sets. We show that hcga outperforms other methodologies (including deep learning) on supervised classification tasks on benchmark data sets whilst retaining the interpretability of network features, which we exemplify on a dataset of neuronal morphologies images. Graph dimensionality. Dimension is a fundamental property of objects and the space in which they are embedded. Yet ideal notions of dimension, as in Euclidean spaces, do not always translate to physical spaces, which can be constrained by boundaries and distorted by inhomogeneities, or to intrinsically discrete systems such as networks. Deviating from approaches based on fractals, here, we present a new framework to define intrinsic notions of dimension on networks, the relative, local and global dimension. We showcase our method on various physical systems.

SeminarVision ScienceRecording

“From the Sublime to the Stomatopod: the story from beginning to nowhere near the end.”

Justin Marshall
University of Queensland
Jul 12, 2021

“Call me a marine vision scientist. Some years ago - never mind how long precisely - having little or no money in my purse, and nothing particular to interest me on shore, I thought I would sail about a little and see what animals see in the watery part of the world. It is a way I have of dividing off the spectrum, and regulating circular polarisation.” Sometimes I wish I had just set out to harpoon a white whale as it would have been easier than studying stomatopod (mantis shrimp) vision. Nowhere near as much fun of course and certainly less dangerous so in this presentation I track the history of discovery and confusion that stomatopods deliver in trying to understand what the do actually see. The talk unashamedly borrows from that of Mike Bok a few weeks ago (April 13th 2021 “The Blurry Beginnings: etc” talk) as an introduction to the system (do go look at his talk again, it is beautiful!) and goes both backwards and forwards in time, trying to provide an explanation for the design of this visual system. The journey is again one of retinal anatomy and physiology, neuroanatomy, electrophysiology, behaviour and body ornaments but this time focusses more on polarisation vision (Mike covered the colour stuff well). There is a comparative section looking at the cephalopods too and by the end, I hope you will understand where we are at with trying to understand this extraordinary way of seeing the world and why we ‘pod-people’ wave our arms around so much when asked to explain; what do stomatopods see? Maybe, to butcher another quote: “mantis shrimp have been rendered visually beautiful for vision’s sake.”

SeminarBrain Imaging

From 1D to 5D: Data-driven Discovery of Whole-brain Dynamic Connectivity in fMRI Data

Vince Calhoun
Founding Director, Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State, Georgia Tech, Emory, Atlanta, GA
May 20, 2021

The analysis of functional magnetic resonance imaging (fMRI) data can greatly benefit from flexible analytic approaches. In particular, the advent of data-driven approaches to identify whole-brain time-varying connectivity and activity has revealed a number of interesting relevant variation in the data which, when ignored, can provide misleading information. In this lecture I will provide a comparative introduction of a range of data-driven approaches to estimating time-varying connectivity. I will also present detailed examples where studies of both brain health and disorder have been advanced by approaches designed to capture and estimate time-varying information in resting fMRI data. I will review several exemplar data sets analyzed in different ways to demonstrate the complementarity as well as trade-offs of various modeling approaches to answer questions about brain function. Finally, I will review and provide examples of strategies for validating time-varying connectivity including simulations, multimodal imaging, and comparative prediction within clinical populations, among others. As part of the interactive aspect I will provide a hands-on guide to the dynamic functional network connectivity toolbox within the GIFT software, including an online didactic analytic decision tree to introduce the various concepts and decisions that need to be made when using such tools

SeminarVision Science

Stereo vision and prey detection in the praying mantis

Vivek Nityananda
Newcastle U
Feb 3, 2021

Praying mantises are the only insects known to have stereo vision. We used a comparative approach to determine how the mechanisms underlying stereopsis in mantises differ from those underlying primate stereo vision. By testing mantises with virtual 3D targets we showed that mantis stereopsis enables prey capture in complex scenes but the mechanisms underlying it differ from those underlying primate stereopsis. My talk will further discuss how stereopsis combines with second-order motion perception to enable the detection of camouflaged prey by mantises. The talk will highlight the benefits of a comparative approach towards understanding visual cognition.

SeminarNeuroscience

Using marmosets for the study of the visual cortex: unique opportunities, and some pitfalls

Marcello Rosa
Monash University
Nov 17, 2020

Marmosets (Callithrix jacchus) are small South American monkeys which are being increasingly becoming adopted as animal models in neuroscience. Knowledge about the marmoset visual system has developed rapidly over the last decade. But what are the comparative advantages, and disadvantages involved in adopting this emerging model, as opposed to the more traditionally used macaque monkey? In this talk I will present case studies where the simpler brain morphology and short developmental cycle of the marmoset have been key factors in facilitating discoveries about the anatomy and physiology of the visual system. Although no single species provides the “ideal” animal model for invasive studies of the neural bases of visual processing, I argue that the development of robust methodologies for the study of the marmoset brain provides exciting opportunities to address long-standing problems in neuroscience.

SeminarGeneticsRecording

Genetic evolution of cerebral cortex size determinants

Victor Borrell
Universidad Miguel Hernández
Oct 15, 2020
SeminarElectrophysiologyRecording

Student´s Oral Presentation II: Comparative study of the bioelectric activity of the legs of the Blaptica dubia cockroach

Carolina Alen; Magela Castro, Ana Clara González, Montevideo, Uruguay
C.Alen and M Castro: CES, ANEP; M. Castro: School of Chemistry, UdelaR; A.C.Gonazález: PEDECIBA, Montevideo, Uruguay
Aug 20, 2020
SeminarMicrobiology

Dynamics of microbiota communities during physical perturbation

Carolina Tropini
UBC – Vancouver BC – Canada
Jul 29, 2020

The consortium of microbes living in and on our bodies is intimately connected with human biology and deeply influenced by physical forces. Despite incredible gains in describing this community, and emerging knowledge of the mechanisms linking it to human health, understanding the basic physical properties and responses of this ecosystem has been comparatively neglected. Most diseases have significant physical effects on the gut; diarrhea alters osmolality, fever and cancer increase temperature, and bowel diseases affect pH. Furthermore, the gut itself is comprised of localized niches that differ significantly in their physical environment, and are inhabited by different commensal microbes. Understanding the impact of common physical factors is necessary for engineering robust microbiota members and communities; however, our knowledge of how they affect the gut ecosystem is poor. We are investigating how changes in osmolality affect the host and the microbial community and lead to mechanical shifts in the cellular environment. Osmotic perturbation is extremely prevalent in humans, caused by the use of laxatives, lactose intolerance, or celiac disease. In our studies we monitored osmotic shock to the microbiota using a comprehensive and novel approach, which combined in vivo experiments to imaging, physical measurements, computational analysis and highly controlled microfluidic experiments. By bridging several disciplines, we developed a mechanistic understanding of the processes involved in osmotic diarrhea, linking single-cell biophysical changes to large-scale community dynamics. Our results indicate that physical perturbations can profoundly and permanently change the competitive and ecological landscape of the gut, and affect the cell wall of bacteria differentially, depending on their mechanical characteristics.

SeminarComputational Neuroscience

Who can turn faster? Comparison of the head direction circuit of two species

Ioannis Pisokas
University of Edinburgh
Jul 20, 2020

Ants, bees and other insects have the ability to return to their nest or hive using a navigation strategy known as path integration. Similarly, fruit flies employ path integration to return to a previously visited food source. An important component of path integration is the ability of the insect to keep track of its heading relative to salient visual cues. A highly conserved brain region known as the central complex has been identified as being of key importance for the computations required for an insect to keep track of its heading. However, the similarities or differences of the underlying heading tracking circuit between species are not well understood. We sought to address this shortcoming by using reverse engineering techniques to derive the effective underlying neural circuits of two evolutionary distant species, the fruit fly and the locust. Our analysis revealed that regardless of the anatomical differences between the two species the essential circuit structure has not changed. Both effective neural circuits have the structural topology of a ring attractor with an eight-fold radial symmetry (Fig. 1). However, despite the strong similarities between the two ring attractors, there remain differences. Using computational modelling we found that two apparently small anatomical differences have significant functional effect on the ability of the two circuits to track fast rotational movements and to maintain a stable heading signal. In particular, the fruit fly circuit responds faster to abrupt heading changes of the animal while the locust circuit maintains a heading signal that is more robust to inhomogeneities in cell membrane properties and synaptic weights. We suggest that the effects of these differences are consistent with the behavioural ecology of the two species. On the one hand, the faster response of the ring attractor circuit in the fruit fly accommodates the fast body saccades that fruit flies are known to perform. On the other hand, the locust is a migratory species, so its behaviour demands maintenance of a defined heading for a long period of time. Our results highlight that even seemingly small differences in the distribution of dendritic fibres can have a significant effect on the dynamics of the effective ring attractor circuit with consequences for the behavioural capabilities of each species. These differences, emerging from morphologically distinct single neurons highlight the importance of a comparative approach to neuroscience.

SeminarDevelopmental NeuroscienceRecording

A human-specific modifier of synaptic development, cortical circuit connectivity and function

Franck Polleux
Columbia University
Apr 30, 2020

The remarkable cognitive abilities characterizing humans has been linked to unique patterns of connectivity characterizing the neocortex. Comparative studies have shown that human cortical pyramidal neurons (PN) receive a significant increase of synaptic inputs when compared to other mammals, including non-human primates and rodents, but how this may relate to changes in cortical connectivity and function remained largely unknown. We previously identified a human-specific gene duplication (HSGD), SRGAP2C, that, when induced in mouse cortical PNs drives human-specific features of synaptic development, including a correlated increase in excitatory (E) and inhibitory (I) synapse density through inhibition of the ancestral SRGAP2A protein (Charrier et al. 2012; Fossatti et al. 2016; Schmidt et al. 2019). However, the origin and nature of this increased connectivity and its impact on cortical circuit function was unknown. I will present new results exploring these questions (see Schmidt et al. (2020) https://www.biorxiv.org/content/10.1101/852970v1). Using a combination of transgenic approaches and quantitative monosynaptic tracing, we discovered that humanization of SRGAP2C expression in the mouse cortex leads to a specific increase in local and long-range cortico-cortical inputs received by layer 2/3 cortical PNs. Moreover, using in vivo two-photon imaging in the barrel cortex of awake mice, we show that humanization of SRGAP2C expression increases the reliability and selectivity of sensory- evoked responses in layer 2/3 PNs. We also found that mice humanized for SRGAP2C in all cortical pyramidal neurons and throughout development are characterized by improved behavioural performance in a novel whisker-based sensory discrimination task compared to control wild-type mice. Our results suggest that the emergence of SRGAP2C during human evolution underlie a new substrate for human brain evolution whereby it led to increased local and long-range cortico-cortical connectivity and improved reliability of sensory-evoked cortical coding. References cited Charrier C.*, Joshi K. *, Coutinho-Budd J., Kim, J-E., Lambert N., de Marchena, J., Jin W-L., Vanderhaeghen P., Ghosh A., Sassa T, and Polleux F. (2012) Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny of spine maturation. Cell 149:923-935. * Co-first authors. Fossati M, Pizzarelli R, Schmidt ER, Kupferman JV, Stroebel D, Polleux F*, Charrier C*. (2016) SRGAP2 and Its Human-Specific Paralog Co-Regulate the Development of Excitatory and Inhibitory Synapses. Neuron. 91(2):356-69. * Co-senior corresponding authors. Schmidt E.R.E., Kupferman J.V., Stackmann M., Polleux F. (2019) The human-specific paralogs SRGAP2 and SRGAP2C differentially modulate SRGAP2A-dependent synaptic development. Scientific Rep. 9(1):18692. Schmidt E.R.E, Zhao H.T., Hillman E.M.C., Polleux F. (2020) Humanization of SRGAP2C expression increases cortico-cortical connectivity and reliability of sensory-evoked responses in mouse brain. Submitted. See also: https://www.biorxiv.org/content/10.1101/852970v1

We use essential cookies to run the site. Analytics cookies are optional and help us improve World Wide. Learn more.