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Scientists

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TopicWorld Wide

scientists

Discover seminars, jobs, and research tagged with scientists across World Wide.
63 curated items60 Seminars2 Positions1 ePoster
Updated 1 day ago
63 items · scientists
63 results
PositionComputer Science

Uri

UCSD
UCSD
Dec 5, 2025

The new lab at UCSD, directed by Uri, is opening positions for machine learning/computer vision scientists. The lab is part of a new “Technology Sandbox” at UCSD, which includes a ThermoFisher cryoEM and mass spec center, a Nikon Imaging Center, and computational resources.

SeminarNeuroscience

Screen Savers : Protecting adolescent mental health in a digital world

Amy Orben
University of Cambridge UK
Dec 2, 2024

In our rapidly evolving digital world, there is increasing concern about the impact of digital technologies and social media on the mental health of young people. Policymakers and the public are nervous. Psychologists are facing mounting pressures to deliver evidence that can inform policies and practices to safeguard both young people and society at large. However, research progress is slow while technological change is accelerating.My talk will reflect on this, both as a question of psychological science and metascience. Digital companies have designed highly popular environments that differ in important ways from traditional offline spaces. By revisiting the foundations of psychology (e.g. development and cognition) and considering digital changes' impact on theories and findings, we gain deeper insights into questions such as the following. (1) How do digital environments exacerbate developmental vulnerabilities that predispose young people to mental health conditions? (2) How do digital designs interact with cognitive and learning processes, formalised through computational approaches such as reinforcement learning or Bayesian modelling?However, we also need to face deeper questions about what it means to do science about new technologies and the challenge of keeping pace with technological advancements. Therefore, I discuss the concept of ‘fast science’, where, during crises, scientists might lower their standards of evidence to come to conclusions quicker. Might psychologists want to take this approach in the face of technological change and looming concerns? The talk concludes with a discussion of such strategies for 21st-century psychology research in the era of digitalization.

SeminarNeuroscience

Use case determines the validity of neural systems comparisons

Erin Grant
Gatsby Computational Neuroscience Unit & Sainsbury Wellcome Centre at University College London
Oct 15, 2024

Deep learning provides new data-driven tools to relate neural activity to perception and cognition, aiding scientists in developing theories of neural computation that increasingly resemble biological systems both at the level of behavior and of neural activity. But what in a deep neural network should correspond to what in a biological system? This question is addressed implicitly in the use of comparison measures that relate specific neural or behavioral dimensions via a particular functional form. However, distinct comparison methodologies can give conflicting results in recovering even a known ground-truth model in an idealized setting, leaving open the question of what to conclude from the outcome of a systems comparison using any given methodology. Here, we develop a framework to make explicit and quantitative the effect of both hypothesis-driven aspects—such as details of the architecture of a deep neural network—as well as methodological choices in a systems comparison setting. We demonstrate via the learning dynamics of deep neural networks that, while the role of the comparison methodology is often de-emphasized relative to hypothesis-driven aspects, this choice can impact and even invert the conclusions to be drawn from a comparison between neural systems. We provide evidence that the right way to adjudicate a comparison depends on the use case—the scientific hypothesis under investigation—which could range from identifying single-neuron or circuit-level correspondences to capturing generalizability to new stimulus properties

SeminarNeuroscienceRecording

ALBA webinar series - Breaking down the ivory tower: Ep. 4 Maria José Diógenes

Maria José Diógenes
iMM - ULisboa, PT
Dec 3, 2023

With this webinar series, the ALBA Disability & Accessibility Working Group aims to bring down the ivory tower of ableism among the brain research community, one extraordinary neuroscientist at a time. These webinars give a platform to scientists with disabilities across the globe and neuroscience disciplines, while reflecting on how to promote inclusive working environments and accessibility to research. For this 4th episode, Dr. Maria José Diógenes (iMM - ULisboa, PT) will talk about how her personal story changed her professional life: from the pharmacy to the laboratory bench and from ageing to Rett Syndrome.

SeminarNeuroscienceRecording

Virtual Brain Twins for Brain Medicine and Epilepsy

Viktor Jirsa
Aix Marseille Université - Inserm
Nov 7, 2023

Over the past decade we have demonstrated that the fusion of subject-specific structural information of the human brain with mathematical dynamic models allows building biologically realistic brain network models, which have a predictive value, beyond the explanatory power of each approach independently. The network nodes hold neural population models, which are derived using mean field techniques from statistical physics expressing ensemble activity via collective variables. Our hybrid approach fuses data-driven with forward-modeling-based techniques and has been successfully applied to explain healthy brain function and clinical translation including aging, stroke and epilepsy. Here we illustrate the workflow along the example of epilepsy: we reconstruct personalized connectivity matrices of human epileptic patients using Diffusion Tensor weighted Imaging (DTI). Subsets of brain regions generating seizures in patients with refractory partial epilepsy are referred to as the epileptogenic zone (EZ). During a seizure, paroxysmal activity is not restricted to the EZ, but may recruit other healthy brain regions and propagate activity through large brain networks. The identification of the EZ is crucial for the success of neurosurgery and presents one of the historically difficult questions in clinical neuroscience. The application of latest techniques in Bayesian inference and model inversion, in particular Hamiltonian Monte Carlo, allows the estimation of the EZ, including estimates of confidence and diagnostics of performance of the inference. The example of epilepsy nicely underwrites the predictive value of personalized large-scale brain network models. The workflow of end-to-end modeling is an integral part of the European neuroinformatics platform EBRAINS and enables neuroscientists worldwide to build and estimate personalized virtual brains.

SeminarNeuroscienceRecording

ALBA webinar series - Breaking down the ivory tower: Ep. 3 Donna Rose Addis

Donna Rose Addis
Rotman Research Institute, Baycrest & University of Toronto, Canada
Oct 22, 2023

With this webinar series, the ALBA Disability & Accessibility Working Group aims to bring down the ivory tower of ableism among the brain research community, one extraordinary neuroscientist at a time. These webinars give a platform to scientists with disabilities across the globe and neuroscience disciplines, while reflecting on how to promote inclusive working environments and accessibility to research. For this 3rd episode, Dr. Donna Rose Addis (Rotman Research Institute, Baycrest & University of Toronto, Canada) will talk about her research and experience.

SeminarNeuroscience

Use of brain imaging data to improve prescriptions of psychotropic drugs - Examples of ketamine in depression and antipsychotics in schizophrenia

Xenia Marlene HART.
Central Institute of Mental Health, Department of Molecular Neuroimaging, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany & Department of Neuropsychiatry, Keio University School of Medicine, Tokyo, Japan
Oct 12, 2023

The use of molecular imaging, particularly PET and SPECT, has significantly transformed the treatment of schizophrenia with antipsychotic drugs since the late 1980s. It has offered insights into the links between drug target engagement, clinical effects, and side effects. A therapeutic window for receptor occupancy is established for antipsychotics, yet there is a divergence of opinions regarding the importance of blood levels, with many downplaying their significance. As a result, the role of therapeutic drug monitoring (TDM) as a personalized therapy tool is often underrated. Since molecular imaging of antipsychotics has focused almost entirely on D2-like dopamine receptors and their potential to control positive symptoms, negative symptoms and cognitive deficits are hardly or not at all investigated. Alternative methods have been introduced, i.e. to investigate the correlation between approximated receptor occupancies from blood levels and cognitive measures. Within the domain of antidepressants, and specifically regarding ketamine's efficacy in depression treatment, there is limited comprehension of the association between plasma concentrations and target engagement. The measurement of AMPA receptors in the human brain has added a new level of comprehension regarding ketamine's antidepressant effects. To ensure precise prescription of psychotropic drugs, it is vital to have a nuanced understanding of how molecular and clinical effects interact. Clinician scientists are assigned with the task of integrating these indispensable pharmacological insights into practice, thereby ensuring a rational and effective approach to the treatment of mental health disorders, signaling a new era of personalized drug therapy mechanisms that promote neuronal plasticity not only under pathological conditions, but also in the healthy aging brain.

SeminarNeuroscienceRecording

Walk the talk: concrete actions to promote diversity in neuroscience in Latin America

ALBA Network & IBRO
Jun 6, 2023

Building upon the webinar "What are the main barriers to succeed in brain sciences in Latin America?" (February 2021) and the paper "Addressing the opportunity gap in the Latin American neuroscience community" (Silva, A., Iyer, K., Cirulli, F. et al. Nat Neurosci August 2022), this ALBA-IBRO Webinar is the next chapter in our journey towards fostering inclusivity and diversity in neuroscience in Latin America. The webinar is designed to go beyond theoretical discussions and provide tangible solutions. We will showcase 3-4 best practice case studies, shining a spotlight on real-life actions and campaigns implemented at the institutional level, be it within government bodies, universities, or other organisations. Our goal is to empower neuroscientists across Latin America by equipping them with practical knowledge they can apply in their own institutions and countries.

SeminarNeuroscience

The Picower Institute Spring 2023 Symposium "Environmental and Social Determinants of Child Mental Health

Cecile Richards (Keynote - fmr President of Planned Parenthood), Gregory Bratman, PhD, Annie Belcourt, PhD, Paul Dworkin, MD, Byungkook Lim, PhD, Sarah Milligan-Toffler, Catherine Jensen Peña, PhD, Ravi Raju, MD. PhD, Robert Sege, MD, PhD, Marc Weisskopf, PhD, ScD, Nsedu Obot Witherspoon, MPH
May 10, 2023

Studies show that abuse, neglect or trauma during childhood can lead to lifelong struggles including with mental health. Fortunately research also indicates that solutions and interventions at various stages of life can be developed to help. But even among people who remain resilient or do not experience acute stresses, a lack of opportunity early in life due to poverty or systemic racism can still constrain their ability to realize their full potential. In what ways are health and other outcomes affected by early life difficulty? What can individuals and institutions do to enhance opportunity?" "This daylong event will feature talks by neuroscientists, policy experts, physicians, educators and activists as they discuss how our experiences and biology work together to affect how our minds develop and what can be accomplished in helping people overcome early disadvantages.

SeminarNeuroscienceRecording

Assigning credit through the "other” connectome

Eric Shea-Brown
University of Washington, Seattle
Apr 18, 2023

Learning in neural networks requires assigning the right values to thousands to trillions or more of individual connections, so that the network as a whole produces the desired behavior. Neuroscientists have gained insights into this “credit assignment” problem through decades of experimental, modeling, and theoretical studies. This has suggested key roles for synaptic eligibility traces and top-down feedback signals, among other factors. Here we study the potential contribution of another type of signaling that is being revealed in greater and greater fidelity by ongoing molecular and genomics studies. This is the set of modulatory pathways local to a given circuit, which form an intriguing second type of connectome overlayed on top of synaptic connectivity. We will share ongoing modeling and theoretical work that explores the possible roles of this local modulatory connectome in network learning.

SeminarNeuroscienceRecording

ALBA webinar series - Breaking down the ivory tower: Ep. 2 Philip Haydon

ALBA Network
Mar 22, 2023

With this webinar series, the ALBA Disability & Accessibility Working Group aims to bring down the ivory tower of ableism among the brain research community, one extraordinary neuroscientist at a time. These webinars give a platform to scientists with disabilities across the globe and neuroscience disciplines, while reflecting on how to promote inclusive working environments and accessibility to research. For this 2nd episode, Prof. Philip Haydon (Tufts University School of Medicine, Boston, USA) will talk about his research and experience.  Prof. Philip runs an active laboratory researching a multitude of neurological disorders (including epilepsy). He is also President of Sail For Epilepsy. His mission is to inspire people with epilepsy, raise funds to support research for a cure, promote awareness of epilepsy and educate the public.

SeminarNeuroscience

LifePerceives

Michael Levin, Katie Bentley, Anil Seth, Lucia Pietroiusti, Andrew Adamatzky, and many more..
Jan 19, 2023

Life Perceives is a symposium bringing together scientists and artists for an open exploration of how “perception” can be understood as a phenomenon that does not only belong to humans, or even the so-called “higher organisms”, but exists across the entire spectrum of life in a myriad of forms. The symposium invites leading practitioners from the arts and sciences to present unique insights through short talks, open discussions, and artistic interventions that bring us slightly closer to the life worlds of plants and fungi, microbial communities and immune systems, cuttlefish and crows. What do we mean when we talk about perception in other species? Do other organisms have an experience of the world? Or does our human-centred perspective make understanding other forms of life on their own terms an impossible dream? Whatever your answers to these questions may be, we hope to unsettle them, and leave you more curious than when you arrived.

SeminarNeuroscience

A possible role of the posterior alpha as a railroad switcher between dorsal and ventral pathways

Liad Mudrik/Walter Sinnott-Armstrong/Ivano Triggiani/Nick Byrd
Jan 9, 2023

Suppose you are on your favorite touchscreen device consciously and deliberately deciding emails to read or delete. In other words, you are consciously and intentionally looking, tapping, and swiping. Now suppose that you are doing this while neuroscientists are recording your brain activity. Eventually, the neuroscientists are familiar enough with your brain activity and behavior that they run an experiment with subliminal cues which reveals that your looking, tapping, and swiping seem to be determined by a random switch in your brain. You are not aware of it, or its impact on your decisions or movements. Would these predictions undermine your sense of free will? Some have argued that it should. Although this inference from unreflective and/or random intention mechanisms to free will skepticism, may seem intuitive at first, there are already objections to it. So, even if this thought experiment is plausible, it may not actually undermine our sense of free will.

SeminarNeuroscience

Brian2CUDA: Generating Efficient CUDA Code for Spiking Neural Networks

Denis Alevi
Berlin Institute of Technology (
Nov 2, 2022

Graphics processing units (GPUs) are widely available and have been used with great success to accelerate scientific computing in the last decade. These advances, however, are often not available to researchers interested in simulating spiking neural networks, but lacking the technical knowledge to write the necessary low-level code. Writing low-level code is not necessary when using the popular Brian simulator, which provides a framework to generate efficient CPU code from high-level model definitions in Python. Here, we present Brian2CUDA, an open-source software that extends the Brian simulator with a GPU backend. Our implementation generates efficient code for the numerical integration of neuronal states and for the propagation of synaptic events on GPUs, making use of their massively parallel arithmetic capabilities. We benchmark the performance improvements of our software for several model types and find that it can accelerate simulations by up to three orders of magnitude compared to Brian’s CPU backend. Currently, Brian2CUDA is the only package that supports Brian’s full feature set on GPUs, including arbitrary neuron and synapse models, plasticity rules, and heterogeneous delays. When comparing its performance with Brian2GeNN, another GPU-based backend for the Brian simulator with fewer features, we find that Brian2CUDA gives comparable speedups, while being typically slower for small and faster for large networks. By combining the flexibility of the Brian simulator with the simulation speed of GPUs, Brian2CUDA enables researchers to efficiently simulate spiking neural networks with minimal effort and thereby makes the advancements of GPU computing available to a larger audience of neuroscientists.

SeminarNeuroscienceRecording

Zero to Birth: How the Human Brain is Built

Bill Harris
Department of Physiology, Development and Neuroscience, University of Cambridge
Oct 17, 2022

By the time a baby is born, its brain is equipped with tens of billions of intricately crafted neurons wired together to form a compact and breathtakingly efficient supercomputer. The book is meant to give a broad audience (i.e. non-neuroscientists) a sense of the step-by-step construction of a human brain as well as our current conceptual understanding of various processes involved. The book also hopes to highlight relevance of brain development to our growing understanding of cognitive and psychological variations and syndromes. The author will talk about the book including the many challenges and rewards involved in writing it.

SeminarNeuroscienceRecording

Is Theory of Mind Analogical? Evidence from the Analogical Theory of Mind cognitive model

Irina Rabkina
Occidental College
Sep 29, 2022

Theory of mind, which consists of reasoning about the knowledge, belief, desire, and similar mental states of others, is a key component of social reasoning and social interaction. While it has been studied by cognitive scientists for decades, none of the prevailing theories of the processes that underlie theory of mind reasoning and development explain the breadth of experimental findings. I propose that this is because theory of mind is, like much of human reasoning, inherently analogical. In this talk, I will discuss several theory of mind findings from the psychology literature, the challenges they pose for our understanding of theory of mind, and bring in evidence from the Analogical Theory of Mind (AToM) cognitive model that demonstrates how these findings fit into an analogical understanding of theory of mind reasoning.

SeminarNeuroscience

Flexible multitask computation in recurrent networks utilizes shared dynamical motifs

Laura Driscoll
Stanford University
Aug 24, 2022

Flexible computation is a hallmark of intelligent behavior. Yet, little is known about how neural networks contextually reconfigure for different computations. Humans are able to perform a new task without extensive training, presumably through the composition of elementary processes that were previously learned. Cognitive scientists have long hypothesized the possibility of a compositional neural code, where complex neural computations are made up of constituent components; however, the neural substrate underlying this structure remains elusive in biological and artificial neural networks. Here we identified an algorithmic neural substrate for compositional computation through the study of multitasking artificial recurrent neural networks. Dynamical systems analyses of networks revealed learned computational strategies that mirrored the modular subtask structure of the task-set used for training. Dynamical motifs such as attractors, decision boundaries and rotations were reused across different task computations. For example, tasks that required memory of a continuous circular variable repurposed the same ring attractor. We show that dynamical motifs are implemented by clusters of units and are reused across different contexts, allowing for flexibility and generalization of previously learned computation. Lesioning these clusters resulted in modular effects on network performance: a lesion that destroyed one dynamical motif only minimally perturbed the structure of other dynamical motifs. Finally, modular dynamical motifs could be reconfigured for fast transfer learning. After slow initial learning of dynamical motifs, a subsequent faster stage of learning reconfigured motifs to perform novel tasks. This work contributes to a more fundamental understanding of compositional computation underlying flexible general intelligence in neural systems. We present a conceptual framework that establishes dynamical motifs as a fundamental unit of computation, intermediate between the neuron and the network. As more whole brain imaging studies record neural activity from multiple specialized systems simultaneously, the framework of dynamical motifs will guide questions about specialization and generalization across brain regions.

SeminarNeuroscience

Growing a world-class precision medicine industry

Prof Gary Egan and Dr Maggie Aulsebrook
Monash Biomedical Imaging
May 24, 2022

Monash Biomedical Imaging is part of the new $71.2 million Australian Precision Medicine Enterprise (APME) facility, which will deliver large-scale development and manufacturing of precision medicines and theranostic radiopharmaceuticals for industry and research. A key feature of the APME project is a high-energy cyclotron with multiple production clean rooms, which will be located on the Monash Biomedical Imaging (MBI) site in Clayton. This strategic co-location will facilitate radiochemistry, PET and SPECT research and clinical use of theranostic (therapeutic and diagnostic) radioisotopes produced on-site. In this webinar, MBI’s Professor Gary Egan and Dr Maggie Aulsebrook will explain how the APME will secure Australia’s supply of critical radiopharmaceuticals, build a globally competitive Australian manufacturing hub, and train scientists and engineers for the Australian workforce. They will cover the APME’s state-of-the-art 30 MeV and 18-24 MeV cyclotrons and radiochemistry facilities, as well as the services that will be accessible to students, scientists, clinical researchers, and pharmaceutical companies in Australia and around the world. The APME is a collaboration between Monash University, Global Medical Solutions Australia, and Telix Pharmaceuticals. Professor Gary Egan is Director of Monash Biomedical Imaging, Director of the ARC Centre of Excellence for Integrative Brain Function and a Distinguished Professor at the Turner Institute for Brain and Mental Health, Monash University. He is also lead investigator of the Victorian Biomedical Imaging Capability, and Deputy Director of the Australian National Imaging Facility. Dr Maggie Aulsebrook obtained her PhD in Chemistry at Monash University and specialises in the development and clinical translation of radiopharmaceuticals. She has led the development of several investigational radiopharmaceuticals for first-in-human application. Maggie leads the Radiochemistry Platform at Monash Biomedical Imaging.

SeminarNeuroscienceRecording

Children’s inference of verb meanings: Inductive, analogical and abductive inference

Mutsumi Imai
Keio University
May 18, 2022

Children need inference in order to learn the meanings of words. They must infer the referent from the situation in which a target word is said. Furthermore, to be able to use the word in other situations, they also need to infer what other referents the word can be generalized to. As verbs refer to relations between arguments, verb learning requires relational analogical inference, something which is challenging to young children. To overcome this difficulty, young children recruit a diverse range of cues in their inference of verb meanings, including, but not limited to, syntactic cues and social and pragmatic cues as well as statistical cues. They also utilize perceptual similarity (object similarity) in progressive alignment to extract relational verb meanings and further to gain insights about relational verb meanings. However, just having a list of these cues is not useful: the cues must be selected, combined, and coordinated to produce the optimal interpretation in a particular context. This process involves abductive reasoning, similar to what scientists do to form hypotheses from a range of facts or evidence. In this talk, I discuss how children use a chain of inferences to learn meanings of verbs. I consider not only the process of analogical mapping and progressive alignment, but also how children use abductive inference to find the source of analogy and gain insights into the general principles underlying verb learning. I also present recent findings from my laboratory that show that prelinguistic human infants use a rudimentary form of abductive reasoning, which enables the first step of word learning.

SeminarNeuroscience

ISYNC: International SynAGE Conference on Healthy Ageing

Prof. Dr. Ulman Lindenberger, Prof. Dr. Carlos Dotti, Prof. Dr. Patrick Verstreken, Prof. Dr. James H. Cole, ...
Mar 28, 2022

The SynAGE committee members are thrilled to host ISYNC, the International SynAGE conference on healthy ageing, on 28-30 March 2022 in Magdeburg, Germany. This conference has been entirely organised from young scientists of the SynAGE research training group RTG 2413 (www.synage.de) and represents a unique occasion for researchers from all over the world to bring together and join great talks and sessions with us and our guests. A constantly updated list of our speakers can be found on the conference webpage: www.isync-md.de. During the conference, attendees will have access to a range of symposia which will deal with Glia, Biomarkers and Immunoresponses during ageing to neurodegeneration brain integrity and cognitive function in health and diseases. Moreover, the conference will offer social events especially for young researchers and the possibility to network together in a beautiful and suggestive location where our conference will take place: the Johanniskirche. The event will be happening in person, but due to the current pandemic situation and restrictions we are planning the conference as a hybrid event with lots of technical support to ensure that every participant can follow the talks and take part in the scientific discussions. The registration to our ISYNC conference is free of charge. However, the number of people attending the conference in person is restricted to 100. Afterwards, registrations will be accepted for joining virtually only. The registration is open until 15.02.2022. Especially for PhD and MD Students: Check our available Travel Grants, Poster Prize and SynAGE Award Dinner: https://www.isync-md.de/index.php/phd-md-specials/ If you need any further information don’t hesitate to contact us via email: contact@synage.de. We are looking forward to meet you in 2022 in Magdeburg to discuss about our research and ideas and bless together science. Your ISYNC organization Committee

SeminarNeuroscience

The Brain Conference (the Guarantors of Brain)

Programme of speakers
The Guarantors of Brain
Feb 24, 2022

Join the Brain Conference on 24-25 February 2022 for the opportunity to hear from neurology’s leading scientists and clinicians. The two-day virtual programme features clinical teaching talks and research presentations from expert speakers including neuroscientist Professor Gina Poe, and the winner of the 2021 Brain Prize, neurologist Professor Peter Goadsby." "Tickets for The Brain Conference 2022 cost just £30, but register with promotional code BRAINCONEM20 for a discounted rate of £25.

SeminarNeuroscience

How does the brain analyse sensory information and learns from it?

Sonja Hofer
Sainsbury Wellcome Centre for Neural Circuits and Behaviour
Feb 23, 2022

Introducing exciting methods that enable neuroscientists to look deep into the living brain, allowing us to study how the brain's neural networks learn and process sensory information.

SeminarNeuroscience

The Brain Conference (the Guarantors of Brain)

Programme of speakers
The Guarantors of Brain
Feb 23, 2022

Join the Brain Conference on 24-25 February 2022 for the opportunity to hear from neurology’s leading scientists and clinicians. The two-day virtual programme features clinical teaching talks and research presentations from expert speakers including neuroscientist Professor Gina Poe, and the winner of the 2021 Brain Prize, neurologist Professor Peter Goadsby." "Tickets for The Brain Conference 2022 cost just £30, but register with promotional code BRAINCONEM20 for a discounted rate of £25.

SeminarNeuroscienceRecording

ALBA-WWN Webinar: What it takes to succeed as a neuroscientist in Africa

ALBA Network & World Women in Neuroscience
Feb 1, 2022

In this webinar, the ALBA Network & World Women in Neuroscience partner to address equity, inclusion & diversity issues across the Sub-Saharan African neuroscience community. The panel discussion will explore the challenges and biases faced by African neuroscientists while establishing their careers - focusing on a lack of mentoring and networking but also on the difficulties to raise funding - as well as display the strengths present in the region, which can be exploited to find solutions. Registration is free but required: https://www.alba.network/alba-wwn-webinar-africa

SeminarNeuroscienceRecording

Challenges and opportunities for neuroscientists in the MENA region

ALBA Network
Dec 2, 2021

As part of its webinar series on region-specific diversity issues, the ALBA Network is organizing a panel discussion to explore the challenges and biases faced by neuroscientists while establishing their research groups and careers in the MENA region, from an academic and cultural perspective. This will be followed by highlights of success stories, unique region-specific opportunities for research collaborations and recommendations to improve representation of MENA neuroscientists in the global stage.

SeminarNeuroscienceRecording

NMC4 Short Talk: Neural Representation: Bridging Neuroscience and Philosophy

Andrew Richmond (he/him)
Columbia University
Dec 1, 2021

We understand the brain in representational terms. E.g., we understand spatial navigation by appealing to the spatial properties that hippocampal cells represent, and the operations hippocampal circuits perform on those representations (Moser et al., 2008). Philosophers have been concerned with the nature of representation, and recently neuroscientists entered the debate, focusing specifically on neural representations. (Baker & Lansdell, n.d.; Egan, 2019; Piccinini & Shagrir, 2014; Poldrack, 2020; Shagrir, 2001). We want to know what representations are, how to discover them in the brain, and why they matter so much for our understanding of the brain. Those questions are framed in a traditional philosophical way: we start with explanations that use representational notions, and to more deeply understand those explanations we ask, what are representations — what is the definition of representation? What is it for some bit of neural activity to be a representation? I argue that there is an alternative, and much more fruitful, approach. Rather than asking what representations are, we should ask what the use of representational *notions* allows us to do in neuroscience — what thinking in representational terms helps scientists do or explain. I argue that this framing offers more fruitful ground for interdisciplinary collaboration by distinguishing the philosophical concerns that have a place in neuroscience from those that don’t (namely the definitional or metaphysical questions about representation). And I argue for a particular view of representational notions: they allow us to impose the structure of one domain onto another as a model of its causal structue. So, e.g., thinking about the hippocampus as representing spatial properties is a way of taking structures in those spatial properties, and projecting those structures (and algorithms that would implement them) them onto the brain as models of its causal structure.

SeminarNeuroscienceRecording

NMC4 Short Talk: Maggot brain, mirror image? A statistical analysis of bilateral symmetry in an insect brain connectome

Benjamin Pedigo (he/him)
Johns Hopkins University
Nov 30, 2021

Neuroscientists have many questions about connectomes that revolve around the ability to compare networks. For example, comparing connectomes could help explain how neural wiring is related to individual differences, genetics, disease, development, or learning. One such question is that of bilateral symmetry: are the left and right sides of a connectome the same? Here, we investigate the bilateral symmetry of a recently presented connectome of an insect brain, the Drosophila larva. We approach this question from the perspective of two-sample testing for networks. First, we show how this question of “sameness” can be framed as a variety of different statistical hypotheses, each with different assumptions. Then, we describe test procedures for each of these hypotheses. We show how these different test procedures perform on both the observed connectome as well as a suite of synthetic perturbations to the connectome. We also point out that these tests require careful attention to parameter alignment and differences in network density in order to provide biologically meaningful results. Taken together, these results provide the first statistical characterization of bilateral symmetry for an entire brain at the single-neuron level, while also giving practical recommendations for future comparisons of connectome networks.

SeminarNeuroscienceRecording

NMC4 Panel: NMC Around the Globe

Sarvenaz Sarabipour
Johns Hopkins University
Nov 30, 2021

For the first time, we are holding a NMC around the globe session, a panel of computational neuroscientists working in different continents who are willing to discuss their challenges and milestones in doing science and training researchers in their home country. We hope that our panelists can share their barriers, what they define as accomplishments and how they would like the future of computational neuroscience to evolve locally and internationally with our diverse NMC audience.

SeminarNeuroscienceRecording

Norse: A library for gradient-based learning in Spiking Neural Networks

Jens Egholm Pedersen
KTH Royal Institute of Technology
Nov 2, 2021

We introduce Norse: An open-source library for gradient-based training of spiking neural networks. In contrast to neuron simulators which mainly target computational neuroscientists, our library seamlessly integrates with the existing PyTorch ecosystem using abstractions familiar to the machine learning community. This has immediate benefits in that it provides a familiar interface, hardware accelerator support and, most importantly, the ability to use gradient-based optimization. While many parallel efforts in this direction exist, Norse emphasizes flexibility and usability in three ways. Users can conveniently specify feed-forward (convolutional) architectures, as well as arbitrarily connected recurrent networks. We strictly adhere to a functional and class-based API such that neuron primitives and, for example, plasticity rules composes. Finally, the functional core API ensures compatibility with the PyTorch JIT and ONNX infrastructure. We have made progress to support network execution on the SpiNNaker platform and plan to support other neuromorphic architectures in the future. While the library is useful in its present state, it also has limitations we will address in ongoing work. In particular, we aim to implement event-based gradient computation, using the EventProp algorithm, which will allow us to support sparse event-based data efficiently, as well as work towards support of more complex neuron models. With this library, we hope to contribute to a joint future of computational neuroscience and neuromorphic computing.

SeminarNeuroscience

Hard x-ray imaging of biological soft tissues

Carles Bosch, Si Chen, Ana Diaz, Tim Salditt, Yannick Schwab
Oct 13, 2021

The aim of this half day virtual meeting is to consider what is currently achievable with existing techniques and to explore where advancements can be made in the short and medium term. Leading scientists in the field will highlight the questions currently being addressed using hard X-ray imaging techniques, volume electron microscopy and their combination with other imaging modalities, with a forward look to areas of opportunity becoming accessible as a result of the recent and upcoming synchrotron upgrades. We expect an exciting day filled with science focused talks and lively discussions on how the field will develop over the next few years.

SeminarOpen SourceRecording

Get more from your ISH brain slices with Stalefish

Seb James
Department of Psychology, The University of Sheffield
Oct 12, 2021

The standard method for staining structures in the brain is to slice the brain into 2D sections. Each slice is treated using a technique such as in-situ hybridization to examine the spatial expression of a particular molecule at a given developmental timepoint. Depending on the brain structures being studied, slices can be made coronally, sagitally, or at any angle that is thought to be optimal for analysis. However, assimilating the information presented in the 2D slice images to gain quantitiative and informative 3D expression patterns is challenging. Even if expression levels are presented as voxels, to give 3D expression clouds, it can be difficult to compare expression across individuals and analysing such data requires significant expertise and imagination. In this talk, I will describe a new approach to examining histology slices, in which the user defines the brain structure of interest by drawing curves around it on each slice in a set and the depth of tissue from which to sample expression. The sampled 'curves' are then assembled into a 3D surface, which can then be transformed onto a common reference frame for comparative analysis. I will show how other neuroscientists can obtain and use the tool, which is called Stalefish, to analyse their own image data with no (or minimal) changes to their slice preparation workflow.

SeminarOpen SourceRecording

Autopilot v0.4.0 - Distributing development of a distributed experimental framework

Jonny Saunders
University of Oregon
Sep 28, 2021

Autopilot is a Python framework for performing complex behavioral neuroscience experiments by coordinating a swarm of Raspberry Pis. It was designed to not only give researchers a tool that allows them to perform the hardware-intensive experiments necessary for the next generation of naturalistic neuroscientific observation, but also to make it easier for scientists to be good stewards of the human knowledge project. Specifically, we designed Autopilot as a framework that lets its users contribute their technical expertise to a cumulative library of hardware interfaces and experimental designs, and produce data that is clean at the time of acquisition to lower barriers to open scientific practices. As autopilot matures, we have been progressively making these aspirations a reality. Currently we are preparing the release of Autopilot v0.4.0, which will include a new plugin system and wiki that makes use of semantic web technology to make a technical and contextual knowledge repository. By combining human readable text and semantic annotations in a wiki that makes contribution as easy as possible, we intend to make a communal knowledge system that gives a mechanism for sharing the contextual technical knowledge that is always excluded from methods sections, but is nonetheless necessary to perform cutting-edge experiments. By integrating it with Autopilot, we hope to make a first of its kind system that allows researchers to fluidly blend technical knowledge and open source hardware designs with the software necessary to use them. Reciprocally, we also hope that this system will support a kind of deep provenance that makes abstract "custom apparatus" statements in methods sections obsolete, allowing the scientific community to losslessly and effortlessly trace a dataset back to the code and hardware designs needed to replicate it. I will describe the basic architecture of Autopilot, recent work on its community contribution ecosystem, and the vision for the future of its development.

SeminarNeuroscienceRecording

Navigating academia as an LGBTQIA+ neuroscientist

ALBA Network
Aug 25, 2021

The ALBA Network is organizing a webinar on LGBTQIA+ inclusion and visibility. This special event will feature a panel of established scientists in brain research who identify as LGBTQIA+. Speaker will discuss their goals, challenges and successes while navigating academia as part of the LGBTQIA+ community. Registration is free but mandatory.

SeminarNeuroscienceRecording

Why do we need a formal ontology of cognition, and what should it look like?

Russ Poldrack
Stanford University
Aug 18, 2021

In my talk I will discuss the concept of a cognitive ontology, which defines the parts of the mind that psychologists and neuroscientsts aim to study. I will discuss the way in which ontologies have traditionally been defined, and then discuss ways in which ontology might be reconsidered in the context of computational approaches to cognition.

SeminarOpen SourceRecording

SimBA for Behavioral Neuroscientists

Sam A. Golden
University of Washington, Department of Biological Structure
Jul 15, 2021

Several excellent computational frameworks exist that enable high-throughput and consistent tracking of freely moving unmarked animals. SimBA introduce and distribute a plug-and play pipeline that enables users to use these pose-estimation approaches in combination with behavioral annotation for the generation of supervised machine-learning behavioral predictive classifiers. SimBA was developed for the analysis of complex social behaviors, but includes the flexibility for users to generate predictive classifiers across other behavioral modalities with minimal effort and no specialized computational background. SimBA has a variety of extended functions for large scale batch video pre-processing, generating descriptive statistics from movement features, and interactive modules for user-defined regions of interest and visualizing classification probabilities and movement patterns.

SeminarNeuroscienceRecording

In-Love with Addiction Neuroscience

Yasmin Hurd
Icahn School of Medicine at Mount Sinai, USA
Jul 14, 2021

In this talk series, addiction neuroscientists from across the world share their personal stories/experiences on the beauty of addiction neuroscience and how/why they have decided to invest their scientific life in this field. We hope that this talk series would encourage and support a new generation of young and passionate addiction neuroscientists in different countries to revolutionize the field of addiction medicine.

SeminarOpen SourceRecording

Addgene AAV data hub

Jason Nasse
Addgene
Jul 1, 2021

The Addgene AAV Data Hub was launched to help scientists share data and protocols obtained from AAV experiments. Our longterm goal is to provide scientists with a resource to help guide AAV selection and use by providing data from individual labs on AAV performance.

SeminarOpen SourceRecording

Open-source tools for systems neuroscience

Jakob Voigts
MIT and Open Ephys
Jun 24, 2021

Open-source tools are gaining an increasing foothold in neuroscience. The rising complexity of experiments in systems neuroscience has led to a need for multiple parts of experiments to work together seamlessly. This means that open-source tools that freely interact with each other and can be understood and modified more easily allow scientists to conduct better experiments with less effort than closed tools. Open Ephys is an organization with team members distributed all around the world. Our mission is to advance our understanding of the brain by promoting community ownership of the tools we use to study it. We are making and distributing cutting edge tools that exploit modern technology to bring down the price and complexity of neuroscience experiments. A large component of this is to take tools that were developed in academic labs and helping with documentation, support, and distribution. More recently, we have been working on bringing high-quality manufacturing, distribution, warranty, and support to open source tools by partnering with OEPS in Portugal. We are now also establishing standards that make it possible to combine methods, such as miniaturized microscopes, electrode drive implants, and silicon probes seamlessly in one system. In the longer term, our development of new tools, interfaces and our standardization efforts have the goal of making it possible for scientists to easily run complex experiments that span from complex behaviors and tasks, multiple recording modalities, to easy access to data processing pipelines.

SeminarNeuroscienceRecording

In-Love with Addiction Neuroscience

Min Zhao
Shanghai Jiao Tong University, China
Jun 9, 2021

In this talk series, addiction neuroscientists from across the world share their personal stories/experiences on the beauty of addiction neuroscience and how/why they have decided to invest their scientific life in this field. We hope that this talk series would encourage and support a new generation of young and passionate addiction neuroscientists in different countries to revolutionize the field of addiction medicine.

SeminarNeuroscienceRecording

Prof. Humphries reads from "The Spike" 📖

Mark Humphries
University of Nottingham
Jun 7, 2021

We see the last cookie in the box and think, can I take that? We reach a hand out. In the 2.1 seconds that this impulse travels through our brain, billions of neurons communicate with one another, sending blips of voltage through our sensory and motor regions. Neuroscientists call these blips “spikes.” Spikes enable us to do everything: talk, eat, run, see, plan, and decide. In The Spike, Mark Humphries takes readers on the epic journey of a spike through a single, brief reaction. In vivid language, Humphries tells the story of what happens in our brain, what we know about spikes, and what we still have left to understand about them. Drawing on decades of research in neuroscience, Humphries explores how spikes are born, how they are transmitted, and how they lead us to action. He dives into previously unanswered mysteries: Why are most neurons silent? What causes neurons to fire spikes spontaneously, without input from other neurons or the outside world? Why do most spikes fail to reach any destination? Humphries presents a new vision of the brain, one where fundamental computations are carried out by spontaneous spikes that predict what will happen in the world, helping us to perceive, decide, and react quickly enough for our survival. Traversing neuroscience’s expansive terrain, The Spike follows a single electrical response to illuminate how our extraordinary brains work.

SeminarNeuroscience

So you want to be a neuroscientist?

Ashley Juavinett
UC San Diego
May 16, 2021

Dr Juavinett will be presenting her book "So you want to be a neuroscientist?", which aims to give aspiring neuroscientists honest, informative insight about the field, as well as education and careers through it. The talk will be followed by a pub quiz (which is optional).

SeminarOpen SourceRecording

BrainGlobe: a Python ecosystem for computational (neuro)anatomy

Adam Tyson
Sainsbury Wellcome Centre, University College London.
May 13, 2021

Neuroscientists routinely perform experiments aimed at recording or manipulating neural activity, uncovering physiological processes underlying brain function or elucidating aspects of brain anatomy. Understanding how the brain generates behaviour ultimately depends on merging the results of these experiments into a unified picture of brain anatomy and function. We present BrainGlobe, a new initiative aimed at developing common Python tools for computational neuroanatomy. These include cellfinder for fast, accurate cell detection in whole-brain microscopy images, brainreg for aligning images to a reference atlas, and brainrender for visualisation of anatomically registered data. These software packages are developed around the BrainGlobe Atlas API. This API provides a common Python interface to download and interact with reference brain atlases from multiple species (including human, mouse and larval zebrafish). This allows software to be developed agnostic to the atlas and species, increasing adoption and interoperability of software tools in neuroscience.

SeminarNeuroscienceRecording

In-Love with Addiction Neuroscience

Anne Lingford-Hughes
Imperial College London, UK
May 12, 2021

In this talk series, addiction neuroscientists from across the world share their personal stories/experiences on the beauty of addiction neuroscience and how/why they have decided to invest their scientific life in this field. We hope that this talk series would encourage and support a new generation of young and passionate addiction neuroscientists in different countries to revolutionize the field of addiction medicine.

SeminarNeuroscienceRecording

Computational psychophysics at the intersection of theory, data and models

Peter Neri
ENS
May 10, 2021

Behavioural measurements are often overlooked by computational neuroscientists, who prefer to focus on electrophysiological recordings or neuroimaging data. This attitude is largely due to perceived lack of depth/richness in relation to behavioural datasets. I will show how contemporary psychophysics can deliver extremely rich and highly constraining datasets that naturally interface with computational modelling. More specifically, I will demonstrate how psychophysics can be used to guide/constrain/refine computational models, and how models can be exploited to design/motivate/interpret psychophysical experiments. Examples will span a wide range of topics (from feature detection to natural scene understanding) and methodologies (from cascade models to deep learning architectures).

SeminarNeuroscienceRecording

Dr Lindsay reads from "Models of the Mind : How Physics, Engineering and Mathematics Shaped Our Understanding of the Brain" 📖

Grace Lindsay
Gatsby Unit for Computational Neuroscience
May 9, 2021

Though the term has many definitions, computational neuroscience is mainly about applying mathematics to the study of the brain. The brain—a jumble of all different kinds of neurons interconnected in countless ways that somehow produce consciousness—has been described as “the most complex object in the known universe”. Physicists for centuries have turned to mathematics to properly explain some of the most seemingly simple processes in the universe—how objects fall, how water flows, how the planets move. Equations have proved crucial in these endeavors because they capture relationships and make precise predictions possible. How could we expect to understand the most complex object in the universe without turning to mathematics? — The answer is we can’t, and that is why I wrote this book. While I’ve been studying and working in the field for over a decade, most people I encounter have no idea what “computational neuroscience” is or that it even exists. Yet a desire to understand how the brain works is a common and very human interest. I wrote this book to let people in on the ways in which the brain will ultimately be understood: through mathematical and computational theories. — At the same time, I know that both mathematics and brain science are on their own intimidating topics to the average reader and may seem downright prohibitory when put together. That is why I’ve avoided (many) equations in the book and focused instead on the driving reasons why scientists have turned to mathematical modeling, what these models have taught us about the brain, and how some surprising interactions between biologists, physicists, mathematicians, and engineers over centuries have laid the groundwork for the future of neuroscience. — Each chapter of Models of the Mind covers a separate topic in neuroscience, starting from individual neurons themselves and building up to the different populations of neurons and brain regions that support memory, vision, movement and more. These chapters document the history of how mathematics has woven its way into biology and the exciting advances this collaboration has in store.

SeminarNeuroscience

The Picower Institute Spring 2021 Symposium: Early Life Stress & Mental Health

Mariana Arcaya, Nadine Burke Harris, Geoffrey Canada, Gloria Choi, Bryan Stevenson, Jose Antonio Vargas
May 9, 2021

Though studies show that abuse, neglect or trauma during childhood can lead to lifelong lifelong struggles including in mental health, research also indicates that solutions and interventions at various stages of life can be developed to help. And while many people manage to remain resilient, a lack of opportunity early in life, including because of poverty and systemic racism, can constrain their ability to realize their full potential. In what ways are health and other outcomes affected? How can systems instead restore opportunity? "The Picower Institute for Learning and Memory's biennial spring symposium, 'Early Life Stress & Mental Health,' will examine these issues. The daylong event will feature talks by neuroscientists, policy experts, physicians, educators and activists as they discuss how our experiences and biology work together to affect how our minds develop and what can be accomplished in helping people overcome early disadvantages.

SeminarNeuroscience

Connectivity and computation in the cerebral cortex

Thomas Mrsic-Flogel
Sainsbury Wellcome Centre, UK
May 5, 2021

Neuroscientists believe that perception, action and cognition arise from brain’s activity. A major challenge in neuroscience is to understand how brain’s complex circuits give rise to activity patterns that support these different functions. I will discuss different ways of mapping neural circuits in the brain, and how we can relate the structure of neural circuits to the computations that take place within them, with an emphasis on the visual system.

SeminarNeuroscience

Bench to bedside: Bridging the gap in neuroscience

Panel Discussion
May 1, 2021

This panel discussion aims to generate meaningful dialogue between emerging leaders in basic and clinical neuroscience. It promises to talk about the ground realities and what acts as a hindrance in people to people connection in the field. It aims to advocate for policy change that will revolutionize the field of neuroscience, allowing neuroscientists to collaborate with clinicians wherein the new research can be made available for public use

SeminarNeuroscience

Ask SAC: Be Neurocurious with Our Mentors!

Ritwika Roy
Reservoir, Mumbai
Apr 23, 2021

Through Ask SAC sessions we aim to bridge the gap between our Scientific Advisory Committe and our budding neuroscientists! After completing her Masters in Neuroscience from the University of Manchester, UK and a professional stint at Pfizer, Ritwika joined Reservoir to make a difference in neurology. She develops creative strategies to assist the neurodiverse community and facilitate better healt support functions. Join us, to ask her anything and everything related to a career in neuroscience!

SeminarNeuroscienceRecording

In-Love with Addiction Neuroscience

Kathleen Brady
Medical University of South Carolina, USA
Apr 7, 2021

In this talk series, addiction neuroscientists from across the world share their personal stories/experiences on the beauty of addiction neuroscience and how/why they have decided to invest their scientific life in this field. We hope that this talk series would encourage and support a new generation of young and passionate addiction neuroscientists in different countries to revolutionize the field of addiction medicine.

SeminarNeuroscience

Portable neuroscience: using devices and apps for diagnosis and treatment of neurological disease

Stuart Baker
Newcastle University
Mar 31, 2021

Scientists work in laboratories; comfortable spaces which we equip and configure to be ideal for our needs. The scientific paradigm has been adopted by clinicians, who run diagnostic tests and treatments in fully equipped hospital facilities. Yet advances in technology mean that that increasingly many functions of a laboratory can be compressed into miniature devices, or even into a smartphone app. This has the potential to be transformative for healthcare in developing nations, allowing complex tests and interventions to be made available in every village. In this talk, I will give two examples of this approach from my recent work. In the field of stroke rehabilitation, I will present basic research which we have conducted in animals over the last decade. This reveals new ways to intervene and strengthen surviving pathways, which can be deployed in cheap electronic devices to enhance functional recovery. In degenerative disease, we have used Bayesian statistical methods to improve an algorithm to measure how rapidly a subject can stop an action. We then implemented this on a portable device and on a smartphone app. The measurement obtained can act as a useful screen for Parkinson’s Disease. I conclude with an outlook for the future of this approach, and an invitation to those who would be interesting in collaborating in rolling it out to in African settings.

SeminarNeuroscience

ALBA-BIN Networking event: Black in (N)Euro

ALBA Network
Mar 30, 2021

The ALBA Network and Black in Neuro are partnering to bring the Black neuroscientific community in Europe together. Are you a Black neuroscientist based in Europe? If so, join us for this casual online networking event. We will share our experience, stories and knowledge about what it is to be black in Europe while working in brain research. We will also discuss potential actions ALBA and BiN could take to provide better visibility to the community. This is a time to get to know each other, share, network and relate. Please register to receive the link to the zoom meeting.

SeminarNeuroscience

Brainstorms Festival

Paul Dolan, Kevin Mitchell, Matthias Wibral
Mar 16, 2021

The Brainstorms Festival is the No1 online neuroscience and AI event for scientists, businesses, investors and startups. Join and listen to talks from leading scientists, take part in interactive discussions, and network with the people driving neurotech and AI innovation globally. The festival provides a digital playground for visionaries with dozens of medical innovations, panel discussions, workshops, a hackathon, and a neuroethics panel discussion which is crucial topic for neurodiversity and disability rights. Register now and be part of our amazing crowd!

SeminarNeuroscienceRecording

How our biases may influence our study of visual modalities: Two tales from the sea

Sönke Johnsen
Duke University
Mar 14, 2021

It has long been appreciated (and celebrated) that certain species have sensory capabilities that humans do not share, for example polarization, ultraviolet, and infrared vision. What is less appreciated however, is that our position as terrestrial human scientists can significantly affect our study of animal senses and signals, even within modalities that we do share. For example, our acute vision can lead us to over-interpret the relevance of fine patterns in animals with coarser vision, and our Cartesian heritage as scientists can lead us to divide sensory modalities into orthogonal parameters (e.g. hue and brightness for color vision), even though this division may not exist within the animal itself. This talk examines two cases from marine visual ecology where a reconsideration of our biases as sharp-eyed Cartesian land mammals can help address questions in visual ecology. The first case examines the enormous variation in visual acuity among animals with image-forming eyes, and focuses on how acknowledging the typically poorer resolving power of animals can help us interpret the function of color patterns in cleaner shrimp and their client fish. The second case examines the how the typical human division of polarized light stimuli into angle and degree of polarization is problematic, and how a physiologically relevant interpretation is both closer to the truth and resolves a number of issues, particularly when considering the propagation of polarized light

ePoster

Set-based Fitness Comparisons - Could Neuroscientists Benefit from Engineering Studies on Conceptual Design?

Amiram Moshaiov

Bernstein Conference 2024