NeurIPS 2026
The Fortieth Annual Conference on Neural Information Processing Systems, organized by the Neural Information Processing Systems Foundation, with the main meeting in Sydney, Australia (Dec 6-12) and satellite venues in Atlanta, Georgia and Paris, France (Dec 9-13).
Learning the Regulatory Code with AI
MIT Biology Colloquium Series talk by Peter Koo (Cold Spring Harbor Laboratory), hosted by Yunha Hwang, on using AI to learn the gene regulatory code.
ECCV 2026
The 19th European Conference on Computer Vision, the biennial premier research conference in computer vision and machine learning managed by the European Computer Vision Association, held at Malmo Arena and Malmomassan in Malmo, Sweden.
Computational Mechanisms of Predictive Processing in Brains and Machines
Predictive processing offers a unifying view of neural computation, proposing that brains continuously anticipate sensory input and update internal models based on prediction errors. In this talk, I will present converging evidence for the computational mechanisms underlying this framework across human neuroscience and deep neural networks. I will begin with recent work showing that large-scale distributed prediction-error encoding in the human brain directly predicts how sensory representations reorganize through predictive learning. I will then turn to PredNet, a popular predictive coding inspired deep network that has been widely used to model real-world biological vision systems. Using dynamic stimuli generated with our Spatiotemporal Style Transfer algorithm, we demonstrate that PredNet relies primarily on low-level spatiotemporal structure and remains insensitive to high-level content, revealing limits in its generalization capacity. Finally, I will discuss new recurrent vision models that integrate top-down feedback connections with intrinsic neural variability, uncovering a dual mechanism for robust sensory coding in which neural variability decorrelates unit responses, while top-down feedback stabilizes network dynamics. Together, these results outline how prediction error signaling and top-down feedback pathways shape adaptive sensory processing in biological and artificial systems.
Local Deep Learning without Gradients in Asymmetric Recurrent Networks
We introduce a statistical physics framework for learning in neural architectures composed of single or interconnected asymmetric attractor networks. These systems can exhibit a manifold of global fixed points capable of implementing sophisticated input-output mappings, which we characterize analytically. Learning from extensive datasets is achieved through the stabilization of fixed points via a fully distributed and local learning process, implemented at the single-neuron level. This simple mechanism yields performance comparable to that of conventional feedforward deep neural networks trained using gradient-based methods. The effectiveness of the model stems from the dense and accessible manifolds of stable fixed points, which encode the internal representations of data. Unlike other approaches to deep learning without backpropagation, our method does not attempt to estimate gradients. Presented in the van Vreeswijk Theoretical Neuroscience Seminar series (formerly WWTNS) on 2025-06-18. Recording duration: 00:45:35.
From Spiking Predictive Coding to Learning Abstract Object Representation
In a first part of the talk, I will present Predictive Coding Light (PCL), a novel unsupervised learning architecture for spiking neural networks. In contrast to conventional predictive coding approaches, which only transmit prediction errors to higher processing stages, PCL learns inhibitory lateral and top-down connectivity to suppress the most predictable spikes and passes a compressed representation of the input to higher processing stages. We show that PCL reproduces a range of biological findings and exhibits a favorable tradeoff between energy consumption and downstream classification performance on challenging benchmarks. A second part of the talk will feature our lab’s efforts to explain how infants and toddlers might learn abstract object representations without supervision. I will present deep learning models that exploit the temporal and multimodal structure of their sensory inputs to learn representations of individual objects, object categories, or abstract super-categories such as „kitchen object“ in a fully unsupervised fashion. These models offer a parsimonious account of how abstract semantic knowledge may be rooted in children's embodied first-person experiences.
Use case determines the validity of neural systems comparisons
Deep learning provides new data-driven tools to relate neural activity to perception and cognition, aiding scientists in developing theories of neural computation that increasingly resemble biological systems both at the level of behavior and of neural activity. But what in a deep neural network should correspond to what in a biological system? This question is addressed implicitly in the use of comparison measures that relate specific neural or behavioral dimensions via a particular functional form. However, distinct comparison methodologies can give conflicting results in recovering even a known ground-truth model in an idealized setting, leaving open the question of what to conclude from the outcome of a systems comparison using any given methodology. Here, we develop a framework to make explicit and quantitative the effect of both hypothesis-driven aspects—such as details of the architecture of a deep neural network—as well as methodological choices in a systems comparison setting. We demonstrate via the learning dynamics of deep neural networks that, while the role of the comparison methodology is often de-emphasized relative to hypothesis-driven aspects, this choice can impact and even invert the conclusions to be drawn from a comparison between neural systems. We provide evidence that the right way to adjudicate a comparison depends on the use case—the scientific hypothesis under investigation—which could range from identifying single-neuron or circuit-level correspondences to capturing generalizability to new stimulus properties
On finding what you’re (not) looking for: prospects and challenges for AI-driven discovery
Recent high-profile scientific achievements by machine learning (ML) and especially deep learning (DL) systems have reinvigorated interest in ML for automated scientific discovery (eg, Wang et al. 2023). Much of this work is motivated by the thought that DL methods might facilitate the efficient discovery of phenomena, hypotheses, or even models or theories more efficiently than traditional, theory-driven approaches to discovery. This talk considers some of the more specific obstacles to automated, DL-driven discovery in frontier science, focusing on gravitational-wave astrophysics (GWA) as a representative case study. In the first part of the talk, we argue that despite these efforts, prospects for DL-driven discovery in GWA remain uncertain. In the second part, we advocate a shift in focus towards the ways DL can be used to augment or enhance existing discovery methods, and the epistemic virtues and vices associated with these uses. We argue that the primary epistemic virtue of many such uses is to decrease opportunity costs associated with investigating puzzling or anomalous signals, and that the right framework for evaluating these uses comes from philosophical work on pursuitworthiness.
Probing neural population dynamics with recurrent neural networks
Large-scale recordings of neural activity are providing new opportunities to study network-level dynamics with unprecedented detail. However, the sheer volume of data and its dynamical complexity are major barriers to uncovering and interpreting these dynamics. I will present latent factor analysis via dynamical systems, a sequential autoencoding approach that enables inference of dynamics from neuronal population spiking activity on single trials and millisecond timescales. I will also discuss recent adaptations of the method to uncover dynamics from neural activity recorded via 2P Calcium imaging. Finally, time permitting, I will mention recent efforts to improve the interpretability of deep-learning based dynamical systems models.
Mathematical and computational modelling of ocular hemodynamics: from theory to applications
Changes in ocular hemodynamics may be indicative of pathological conditions in the eye (e.g. glaucoma, age-related macular degeneration), but also elsewhere in the body (e.g. systemic hypertension, diabetes, neurodegenerative disorders). Thanks to its transparent fluids and structures that allow the light to go through, the eye offers a unique window on the circulation from large to small vessels, and from arteries to veins. Deciphering the causes that lead to changes in ocular hemodynamics in a specific individual could help prevent vision loss as well as aid in the diagnosis and management of diseases beyond the eye. In this talk, we will discuss how mathematical and computational modelling can help in this regard. We will focus on two main factors, namely blood pressure (BP), which drives the blood flow through the vessels, and intraocular pressure (IOP), which compresses the vessels and may impede the flow. Mechanism-driven models translates fundamental principles of physics and physiology into computable equations that allow for identification of cause-to-effect relationships among interplaying factors (e.g. BP, IOP, blood flow). While invaluable for causality, mechanism-driven models are often based on simplifying assumptions to make them tractable for analysis and simulation; however, this often brings into question their relevance beyond theoretical explorations. Data-driven models offer a natural remedy to address these short-comings. Data-driven methods may be supervised (based on labelled training data) or unsupervised (clustering and other data analytics) and they include models based on statistics, machine learning, deep learning and neural networks. Data-driven models naturally thrive on large datasets, making them scalable to a plethora of applications. While invaluable for scalability, data-driven models are often perceived as black- boxes, as their outcomes are difficult to explain in terms of fundamental principles of physics and physiology and this limits the delivery of actionable insights. The combination of mechanism-driven and data-driven models allows us to harness the advantages of both, as mechanism-driven models excel at interpretability but suffer from a lack of scalability, while data-driven models are excellent at scale but suffer in terms of generalizability and insights for hypothesis generation. This combined, integrative approach represents the pillar of the interdisciplinary approach to data science that will be discussed in this talk, with application to ocular hemodynamics and specific examples in glaucoma research.
Foundation models in ophthalmology
Abstract to follow.
Diverse applications of artificial intelligence and mathematical approaches in ophthalmology
Ophthalmology is ideally placed to benefit from recent advances in artificial intelligence. It is a highly image-based specialty and provides unique access to the microvascular circulation and the central nervous system. This talk will demonstrate diverse applications of machine learning and deep learning techniques in ophthalmology, including in age-related macular degeneration (AMD), the leading cause of blindness in industrialized countries, and cataract, the leading cause of blindness worldwide. This will include deep learning approaches to automated diagnosis, quantitative severity classification, and prognostic prediction of disease progression, both from images alone and accompanied by demographic and genetic information. The approaches discussed will include deep feature extraction, label transfer, and multi-modal, multi-task training. Cluster analysis, an unsupervised machine learning approach to data classification, will be demonstrated by its application to geographic atrophy in AMD, including exploration of genotype-phenotype relationships. Finally, mediation analysis will be discussed, with the aim of dissecting complex relationships between AMD disease features, genotype, and progression.
Deep learning applications in ophthalmology
Deep learning techniques have revolutionized the field of image analysis and played a disruptive role in the ability to quickly and efficiently train image analysis models that perform as well as human beings. This talk will cover the beginnings of the application of deep learning in the field of ophthalmology and vision science, and cover a variety of applications of using deep learning as a method for scientific discovery and latent associations.
Understanding Machine Learning via Exactly Solvable Statistical Physics Models
The affinity between statistical physics and machine learning has a long history. I will describe the main lines of this long-lasting friendship in the context of current theoretical challenges and open questions about deep learning. Theoretical physics often proceeds in terms of solvable synthetic models, I will describe the related line of work on solvable models of simple feed-forward neural networks. I will highlight a path forward to capture the subtle interplay between the structure of the data, the architecture of the network, and the optimization algorithms commonly used for learning.
Can a single neuron solve MNIST? Neural computation of machine learning tasks emerges from the interaction of dendritic properties
Physiological experiments have highlighted how the dendrites of biological neurons can nonlinearly process distributed synaptic inputs. However, it is unclear how qualitative aspects of a dendritic tree, such as its branched morphology, its repetition of presynaptic inputs, voltage-gated ion channels, electrical properties and complex synapses, determine neural computation beyond this apparent nonlinearity. While it has been speculated that the dendritic tree of a neuron can be seen as a multi-layer neural network and it has been shown that such an architecture could be computationally strong, we do not know if that computational strength is preserved under these qualitative biological constraints. Here we simulate multi-layer neural network models of dendritic computation with and without these constraints. We find that dendritic model performance on interesting machine learning tasks is not hurt by most of these constraints and may synergistically benefit from all of them combined. Our results suggest that single real dendritic trees may be able to learn a surprisingly broad range of tasks through the emergent capabilities afforded by their properties.
On the link between conscious function and general intelligence in humans and machines
In popular media, there is often a connection drawn between the advent of awareness in artificial agents and those same agents simultaneously achieving human or superhuman level intelligence. In this talk, I will examine the validity and potential application of this seemingly intuitive link between consciousness and intelligence. I will do so by examining the cognitive abilities associated with three contemporary theories of conscious function: Global Workspace Theory (GWT), Information Generation Theory (IGT), and Attention Schema Theory (AST), and demonstrating that all three theories specifically relate conscious function to some aspect of domain-general intelligence in humans. With this insight, we will turn to the field of Artificial Intelligence (AI) and find that, while still far from demonstrating general intelligence, many state-of-the-art deep learning methods have begun to incorporate key aspects of each of the three functional theories. Given this apparent trend, I will use the motivating example of mental time travel in humans to propose ways in which insights from each of the three theories may be combined into a unified model. I believe that doing so can enable the development of artificial agents which are not only more generally intelligent but are also consistent with multiple current theories of conscious function.
Beyond Biologically Plausible Spiking Networks for Neuromorphic Computing
Biologically plausible spiking neural networks (SNNs) are an emerging architecture for deep learning tasks due to their energy efficiency when implemented on neuromorphic hardware. However, many of the biological features are at best irrelevant and at worst counterproductive when evaluated in the context of task performance and suitability for neuromorphic hardware. In this talk, I will present an alternative paradigm to design deep learning architectures with good task performance in real-world benchmarks while maintaining all the advantages of SNNs. We do this by focusing on two main features – event-based computation and activity sparsity. Starting from the performant gated recurrent unit (GRU) deep learning architecture, we modify it to make it event-based and activity-sparse. The resulting event-based GRU (EGRU) is extremely efficient for both training and inference. At the same time, it achieves performance close to conventional deep learning architectures in challenging tasks such as language modelling, gesture recognition and sequential MNIST.
No Free Lunch from Deep Learning in Neuroscience: A Case Study through Models of the Entorhinal-Hippocampal Circuit
Research in Neuroscience, as in many scientific disciplines, is undergoing a renaissance based on deep learning. Unique to Neuroscience, deep learning models can be used not only as a tool but interpreted as models of the brain. The central claims of recent deep learning-based models of brain circuits are that they shed light on fundamental functions being optimized or make novel predictions about neural phenomena. We show, through the case-study of grid cells in the entorhinal-hippocampal circuit, that one may get neither. We rigorously examine the claims of deep learning models of grid cells using large-scale hyperparameter sweeps and theory-driven experimentation, and demonstrate that the results of such models are more strongly driven by particular, non-fundamental, and post-hoc implementation choices than fundamental truths about neural circuits or the loss function(s) they might optimize. We discuss why these models cannot be expected to produce accurate models of the brain without the addition of substantial amounts of inductive bias, an informal No Free Lunch result for Neuroscience.
Building System Models of Brain-Like Visual Intelligence with Brain-Score
Research in the brain and cognitive sciences attempts to uncover the neural mechanisms underlying intelligent behavior in domains such as vision. Due to the complexities of brain processing, studies necessarily had to start with a narrow scope of experimental investigation and computational modeling. I argue that it is time for our field to take the next step: build system models that capture a range of visual intelligence behaviors along with the underlying neural mechanisms. To make progress on system models, we propose integrative benchmarking – integrating experimental results from many laboratories into suites of benchmarks that guide and constrain those models at multiple stages and scales. We show-case this approach by developing Brain-Score benchmark suites for neural (spike rates) and behavioral experiments in the primate visual ventral stream. By systematically evaluating a wide variety of model candidates, we not only identify models beginning to match a range of brain data (~50% explained variance), but also discover that models’ brain scores are predicted by their object categorization performance (up to 70% ImageNet accuracy). Using the integrative benchmarks, we develop improved state-of-the-art system models that more closely match shallow recurrent neuroanatomy and early visual processing to predict primate temporal processing and become more robust, and require fewer supervised synaptic updates. Taken together, these integrative benchmarks and system models are first steps to modeling the complexities of brain processing in an entire domain of intelligence.
General purpose event-based architectures for deep learning
Biologically plausible spiking neural networks (SNNs) are an emerging architecture for deep learning tasks due to their energy efficiency when implemented on neuromorphic hardware. However, many of the biological features are at best irrelevant and at worst counterproductive when evaluated in the context of task performance and suitability for neuromorphic hardware. In this talk, I will present an alternative paradigm to design deep learning architectures with good task performance in real-world benchmarks while maintaining all the advantages of SNNs. We do this by focusing on two main features -- event-based computation and activity sparsity. Starting from the performant gated recurrent unit (GRU) deep learning architecture, we modify it to make it event-based and activity-sparse. The resulting event-based GRU (EGRU) is extremely efficient for both training and inference. At the same time, it achieves performance close to conventional deep learning architectures in challenging tasks such as language modelling, gesture recognition and sequential MNIST
Computational Imaging: Augmenting Optics with Algorithms for Biomedical Microscopy and Neural Imaging
Computational imaging seeks to achieve novel capabilities and overcome conventional limitations by combining optics and algorithms. In this seminar, I will discuss two computational imaging technologies developed in Boston University Computational Imaging Systems lab, including Intensity Diffraction Tomography and Computational Miniature Mesoscope. In our intensity diffraction tomography system, we demonstrate 3D quantitative phase imaging on a simple LED array microscope. We develop both single-scattering and multiple-scattering models to image complex biological samples. In our Computational Miniature Mesoscope, we demonstrate single-shot 3D high-resolution fluorescence imaging across a wide field-of-view in a miniaturized platform. We develop methods to characterize 3D spatially varying aberrations and physical simulator-based deep learning strategies to achieve fast and accurate reconstructions. Broadly, I will discuss how synergies between novel optical instrumentation, physical modeling, and model- and learning-based computational algorithms can push the limits in biomedical microscopy and neural imaging.
Feedforward and feedback processes in visual recognition
Progress in deep learning has spawned great successes in many engineering applications. As a prime example, convolutional neural networks, a type of feedforward neural networks, are now approaching – and sometimes even surpassing – human accuracy on a variety of visual recognition tasks. In this talk, however, I will show that these neural networks and their recent extensions exhibit a limited ability to solve seemingly simple visual reasoning problems involving incremental grouping, similarity, and spatial relation judgments. Our group has developed a recurrent network model of classical and extra-classical receptive field circuits that is constrained by the anatomy and physiology of the visual cortex. The model was shown to account for diverse visual illusions providing computational evidence for a novel canonical circuit that is shared across visual modalities. I will show that this computational neuroscience model can be turned into a modern end-to-end trainable deep recurrent network architecture that addresses some of the shortcomings exhibited by state-of-the-art feedforward networks for solving complex visual reasoning tasks. This suggests that neuroscience may contribute powerful new ideas and approaches to computer science and artificial intelligence.
Cortex-dependent corrections as the mouse tongue reaches for and misses targets
Brendan Ito (Cornell University, USA) and Teja Bollu (Salk Institute, USA) share unique insights into rapid online motor corrections during mouse licking, analogous to primate goal-oriented reaching. Techniques covered include large-scale single unit recording during behaviour with optogenetics, and a deep-learning-based neural network to resolve 3D tongue kinematics during licking.
Artificial Intelligence and Racism – What are the implications for scientific research?
As questions of race and justice have risen to the fore across the sciences, the ALBA Network has invited Dr Shakir Mohamed (Senior Research Scientist at DeepMind, UK) to provide a keynote speech on Artificial Intelligence and racism, and the implications for scientific research, that will be followed by a discussion chaired by Dr Konrad Kording (Department of Neuroscience at University of Pennsylvania, US - neuromatch co-founder)
Implementing structure mapping as a prior in deep learning models for abstract reasoning
Building conceptual abstractions from sensory information and then reasoning about them is central to human intelligence. Abstract reasoning both relies on, and is facilitated by, our ability to make analogies about concepts from known domains to novel domains. Structure Mapping Theory of human analogical reasoning posits that analogical mappings rely on (higher-order) relations and not on the sensory content of the domain. This enables humans to reason systematically about novel domains, a problem with which machine learning (ML) models tend to struggle. We introduce a two-stage neural net framework, which we label Neural Structure Mapping (NSM), to learn visual analogies from Raven's Progressive Matrices, an abstract visual reasoning test of fluid intelligence. Our framework uses (1) a multi-task visual relationship encoder to extract constituent concepts from raw visual input in the source domain, and (2) a neural module net analogy inference engine to reason compositionally about the inferred relation in the target domain. Our NSM approach (a) isolates the relational structure from the source domain with high accuracy, and (b) successfully utilizes this structure for analogical reasoning in the target domain.
Analogical Reasoning with Neuro-Symbolic AI
Knowledge discovery with computers requires a huge amount of search. Analogical reasoning is effective for efficient knowledge discovery. Therefore, we proposed analogical reasoning systems based on first-order predicate logic using Neuro-Symbolic AI. Neuro-Symbolic AI is a combination of Symbolic AI and artificial neural networks and has features that are easy for human interpretation and robust against data ambiguity and errors. We have implemented analogical reasoning systems by Neuro-symbolic AI models with word embedding which can represent similarity between words. Using the proposed systems, we efficiently extracted unknown rules from knowledge bases described in Prolog. The proposed method is the first case of analogical reasoning based on the first-order predicate logic using deep learning.
Deep Internal learning -- Deep Visual Inference without prior examples
NMC4 Keynote:
The brain represents the external world through the bottleneck of sensory organs. The network of hierarchically organized neurons is thought to recover the causes of sensory inputs to reconstruct the reality in the brain in idiosyncratic ways depending on individuals and their internal states. How can we understand the world model represented in an individual’s brain, or the neuroverse? My lab has been working on brain decoding of visual perception and subjective experiences such as imagery and dreaming using machine learning and deep neural network representations. In this talk, I will outline the progress of brain decoding methods and present how subjective experiences are externalized as images and how they could be shared across individuals via neural code conversion. The prospects of these approaches in basic science and neurotechnology will be discussed.
Deep kernel methods
Deep neural networks (DNNs) with the flexibility to learn good top-layer representations have eclipsed shallow kernel methods without that flexibility. Here, we take inspiration from deep neural networks to develop a new family of deep kernel method. In a deep kernel method, there is a kernel at every layer, and the kernels are jointly optimized to improve performance (with strong regularisation). We establish the representational power of deep kernel methods, by showing that they perform exact inference in an infinitely wide Bayesian neural network or deep Gaussian process. Next, we conjecture that the deep kernel machine objective is unimodal, and give a proof of unimodality for linear kernels. Finally, we exploit the simplicity of the deep kernel machine loss to develop a new family of optimizers, based on a matrix equation from control theory, that converges in around 10 steps.
Edge Computing using Spiking Neural Networks
Deep learning has made tremendous progress in the last year but it's high computational and memory requirements impose challenges in using deep learning on edge devices. There has been some progress in lowering memory requirements of deep neural networks (for instance, use of half-precision) but there has been minimal effort in developing alternative efficient computational paradigms. Inspired by the brain, Spiking Neural Networks (SNN) provide an energy-efficient alternative to conventional rate-based neural networks. However, SNN architectures that employ the traditional feedforward and feedback pass do not fully exploit the asynchronous event-based processing paradigm of SNNs. In the first part of my talk, I will present my work on predictive coding which offers a fundamentally different approach to developing neural networks that are particularly suitable for event-based processing. In the second part of my talk, I will present our work on development of approaches for SNNs that target specific problems like low response latency and continual learning. References Dora, S., Bohte, S. M., & Pennartz, C. (2021). Deep Gated Hebbian Predictive Coding Accounts for Emergence of Complex Neural Response Properties Along the Visual Cortical Hierarchy. Frontiers in Computational Neuroscience, 65. Saranirad, V., McGinnity, T. M., Dora, S., & Coyle, D. (2021, July). DoB-SNN: A New Neuron Assembly-Inspired Spiking Neural Network for Pattern Classification. In 2021 International Joint Conference on Neural Networks (IJCNN) (pp. 1-6). IEEE. Machingal, P., Thousif, M., Dora, S., Sundaram, S., Meng, Q. (2021). A Cross Entropy Loss for Spiking Neural Networks. Expert Systems with Applications (under review).
Norse: A library for gradient-based learning in Spiking Neural Networks
Norse aims to exploit the advantages of bio-inspired neural components, which are sparse and event-driven - a fundamental difference from artificial neural networks. Norse expands PyTorch with primitives for bio-inspired neural components, bringing you two advantages: a modern and proven infrastructure based on PyTorch and deep learning-compatible spiking neural network components.
StereoSpike: Depth Learning with a Spiking Neural Network
Depth estimation is an important computer vision task, useful in particular for navigation in autonomous vehicles, or for object manipulation in robotics. Here we solved it using an end-to-end neuromorphic approach, combining two event-based cameras and a Spiking Neural Network (SNN) with a slightly modified U-Net-like encoder-decoder architecture, that we named StereoSpike. More specifically, we used the Multi Vehicle Stereo Event Camera Dataset (MVSEC). It provides a depth ground-truth, which was used to train StereoSpike in a supervised manner, using surrogate gradient descent. We propose a novel readout paradigm to obtain a dense analog prediction –the depth of each pixel– from the spikes of the decoder. We demonstrate that this architecture generalizes very well, even better than its non-spiking counterparts, leading to state-of-the-art test accuracy. To the best of our knowledge, it is the first time that such a large-scale regression problem is solved by a fully spiking network. Finally, we show that low firing rates (<10%) can be obtained via regularization, with a minimal cost in accuracy. This means that StereoSpike could be implemented efficiently on neuromorphic chips, opening the door for low power real time embedded systems.
On the implicit bias of SGD in deep learning
Tali's work emphasized the tradeoff between compression and information preservation. In this talk I will explore this theme in the context of deep learning. Artificial neural networks have recently revolutionized the field of machine learning. However, we still do not have sufficient theoretical understanding of how such models can be successfully learned. Two specific questions in this context are: how can neural nets be learned despite the non-convexity of the learning problem, and how can they generalize well despite often having more parameters than training data. I will describe our recent work showing that gradient-descent optimization indeed leads to 'simpler' models, where simplicity is captured by lower weight norm and in some cases clustering of weight vectors. We demonstrate this for several teacher and student architectures, including learning linear teachers with ReLU networks, learning boolean functions and learning convolutional pattern detection architectures.
Credit Assignment in Neural Networks through Deep Feedback Control
The success of deep learning sparked interest in whether the brain learns by using similar techniques for assigning credit to each synaptic weight for its contribution to the network output. However, the majority of current attempts at biologically-plausible learning methods are either non-local in time, require highly specific connectivity motives, or have no clear link to any known mathematical optimization method. Here, we introduce Deep Feedback Control (DFC), a new learning method that uses a feedback controller to drive a deep neural network to match a desired output target and whose control signal can be used for credit assignment. The resulting learning rule is fully local in space and time and approximates Gauss-Newton optimization for a wide range of feedback connectivity patterns. To further underline its biological plausibility, we relate DFC to a multi-compartment model of cortical pyramidal neurons with a local voltage-dependent synaptic plasticity rule, consistent with recent theories of dendritic processing. By combining dynamical system theory with mathematical optimization theory, we provide a strong theoretical foundation for DFC that we corroborate with detailed results on toy experiments and standard computer-vision benchmarks.
Introducing YAPiC: An Open Source tool for biologists to perform complex image segmentation with deep learning
Robust detection of biological structures such as neuronal dendrites in brightfield micrographs, tumor tissue in histological slides, or pathological brain regions in MRI scans is a fundamental task in bio-image analysis. Detection of those structures requests complex decision making which is often impossible with current image analysis software, and therefore typically executed by humans in a tedious and time-consuming manual procedure. Supervised pixel classification based on Deep Convolutional Neural Networks (DNNs) is currently emerging as the most promising technique to solve such complex region detection tasks. Here, a self-learning artificial neural network is trained with a small set of manually annotated images to eventually identify the trained structures from large image data sets in a fully automated way. While supervised pixel classification based on faster machine learning algorithms like Random Forests are nowadays part of the standard toolbox of bio-image analysts (e.g. Ilastik), the currently emerging tools based on deep learning are still rarely used. There is also not much experience in the community how much training data has to be collected, to obtain a reasonable prediction result with deep learning based approaches. Our software YAPiC (Yet Another Pixel Classifier) provides an easy-to-use Python- and command line interface and is purely designed for intuitive pixel classification of multidimensional images with DNNs. With the aim to integrate well in the current open source ecosystem, YAPiC utilizes the Ilastik user interface in combination with a high performance GPU server for model training and prediction. Numerous research groups at our institute have already successfully applied YAPiC for a variety of tasks. From our experience, a surprisingly low amount of sparse label data is needed to train a sufficiently working classifier for typical bioimaging applications. Not least because of this, YAPiC has become the "standard weapon” for our core facility to detect objects in hard-to-segement images. We would like to present some use cases like cell classification in high content screening, tissue detection in histological slides, quantification of neural outgrowth in phase contrast time series, or actin filament detection in transmission electron microscopy.
Memory for Latent Representations: An Account of Working Memory that Builds on Visual Knowledge for Efficient and Detailed Visual Representations
Visual knowledge obtained from our lifelong experience of the world plays a critical role in our ability to build short-term memories. We propose a mechanistic explanation of how working memory (WM) representations are built from the latent representations of visual knowledge and can then be reconstructed. The proposed model, Memory for Latent Representations (MLR), features a variational autoencoder with an architecture that corresponds broadly to the human visual system and an activation-based binding pool of neurons that binds items’ attributes to tokenized representations. The simulation results revealed that shape information for stimuli that the model was trained on, can be encoded and retrieved efficiently from latents in higher levels of the visual hierarchy. On the other hand, novel patterns that are completely outside the training set can be stored from a single exposure using only latents from early layers of the visual system. Moreover, the representation of a given stimulus can have multiple codes, representing specific visual features such as shape or color, in addition to categorical information. Finally, we validated our model by testing a series of predictions against behavioral results acquired from WM tasks. The model provides a compelling demonstration of visual knowledge yielding the formation of compact visual representation for efficient memory encoding.
Zero-shot visual reasoning with probabilistic analogical mapping
There has been a recent surge of interest in the question of whether and how deep learning algorithms might be capable of abstract reasoning, much of which has centered around datasets based on Raven’s Progressive Matrices (RPM), a visual analogy problem set commonly employed to assess fluid intelligence. This has led to the development of algorithms that are capable of solving RPM-like problems directly from pixel-level inputs. However, these algorithms require extensive direct training on analogy problems, and typically generalize poorly to novel problem types. This is in stark contrast to human reasoners, who are capable of solving RPM and other analogy problems zero-shot — that is, with no direct training on those problems. Indeed, it’s this capacity for zero-shot reasoning about novel problem types, i.e. fluid intelligence, that RPM was originally designed to measure. I will present some results from our recent efforts to model this capacity for zero-shot reasoning, based on an extension of a recently proposed approach to analogical mapping we refer to as Probabilistic Analogical Mapping (PAM). Our RPM model uses deep learning to extract attributed graph representations from pixel-level inputs, and then performs alignment of objects between source and target analogs using gradient descent to optimize a graph-matching objective. This extended version of PAM features a number of new capabilities that underscore the flexibility of the overall approach, including 1) the capacity to discover solutions that emphasize either object similarity or relation similarity, based on the demands of a given problem, 2) the ability to extract a schema representing the overall abstract pattern that characterizes a problem, and 3) the ability to directly infer the answer to a problem, rather than relying on a set of possible answer choices. This work suggests that PAM is a promising framework for modeling human zero-shot reasoning.
Understanding neural dynamics in high dimensions across multiple timescales: from perception to motor control and learning
Remarkable advances in experimental neuroscience now enable us to simultaneously observe the activity of many neurons, thereby providing an opportunity to understand how the moment by moment collective dynamics of the brain instantiates learning and cognition. However, efficiently extracting such a conceptual understanding from large, high dimensional neural datasets requires concomitant advances in theoretically driven experimental design, data analysis, and neural circuit modeling. We will discuss how the modern frameworks of high dimensional statistics and deep learning can aid us in this process. In particular we will discuss: (1) how unsupervised tensor component analysis and time warping can extract unbiased and interpretable descriptions of how rapid single trial circuit dynamics change slowly over many trials to mediate learning; (2) how to tradeoff very different experimental resources, like numbers of recorded neurons and trials to accurately discover the structure of collective dynamics and information in the brain, even without spike sorting; (3) deep learning models that accurately capture the retina’s response to natural scenes as well as its internal structure and function; (4) algorithmic approaches for simplifying deep network models of perception; (5) optimality approaches to explain cell-type diversity in the first steps of vision in the retina.
Transforming task representations
Humans can adapt to a novel task on our first try. By contrast, artificial intelligence systems often require immense amounts of data to adapt. In this talk, I will discuss my recent work (https://www.pnas.org/content/117/52/32970) on creating deep learning systems that can adapt on their first try by exploiting relationships between tasks. Specifically, the approach is based on transforming a representation for a known task to produce a representation for the novel task, by inferring and then using a higher order function that captures a relationship between the tasks. This approach can be interpreted as a type of analogical reasoning. I will show that task transformation can allow systems to adapt to novel tasks on their first try in domains ranging from card games, to mathematical objects, to image classification and reinforcement learning. I will discuss the analogical interpretation of this approach, an analogy between levels of abstraction within the model architecture that I refer to as homoiconicity, and what this work might suggest about using deep-learning models to infer analogies more generally.
Computational psychophysics at the intersection of theory, data and models
Behavioural measurements are often overlooked by computational neuroscientists, who prefer to focus on electrophysiological recordings or neuroimaging data. This attitude is largely due to perceived lack of depth/richness in relation to behavioural datasets. I will show how contemporary psychophysics can deliver extremely rich and highly constraining datasets that naturally interface with computational modelling. More specifically, I will demonstrate how psychophysics can be used to guide/constrain/refine computational models, and how models can be exploited to design/motivate/interpret psychophysical experiments. Examples will span a wide range of topics (from feature detection to natural scene understanding) and methodologies (from cascade models to deep learning architectures).
Artificial neural networks do not adequately mimic whatever is going on in the real brain
One may think that Deep Learning technology works in ways that are similar to the human brain. This is not really true. Our best AI technology still does not mimic the brain sufficiently well to be a match in intelligence. I will describe seven differences on how our minds work in ways diametrically opposite to those of Deep Learning technology.
Mental Simulation, Imagination, and Model-Based Deep RL
Mental simulation—the capacity to imagine what will or what could be—is a salient feature of human cognition, playing a key role in a wide range of cognitive abilities. In artificial intelligence, the last few years have seen the development of methods which are analogous to mental models and mental simulation. In this talk, I will discuss recent methods in deep learning for constructing such models from data and learning to use them via reinforcement learning, and compare such approaches to human mental simulation. While a number of challenges remain in matching the capacity of human mental simulation, I will highlight some recent progress on developing more compositional and efficient model-based algorithms through the use of graph neural networks and tree search.
An open-source experimental framework for automation of cell biology experiments
Modern biological methods often require a large number of experiments to be conducted. For example, dissecting molecular pathways involved in a variety of biological processes in neurons and non-excitable cells requires high-throughput compound library or RNAi screens. Another example requiring large datasets - modern data analysis methods such as deep learning. These have been successfully applied to a number of biological and medical questions. In this talk we will describe an open-source platform allowing such experiments to be automated. The platform consists of an XY stage, perfusion system and an epifluorescent microscope with autofocusing. It is extremely easy to build and can be used for different experimental paradigms, ranging from immunolabeling and routine characterisation of large numbers of cell lines to high-throughput imaging of fluorescent reporters.
Do deep learning latent spaces resemble human brain representations?
In recent years, artificial neural networks have demonstrated human-like or super-human performance in many tasks including image or speech recognition, natural language processing (NLP), playing Go, chess, poker and video-games. One remarkable feature of the resulting models is that they can develop very intuitive latent representations of their inputs. In these latent spaces, simple linear operations tend to give meaningful results, as in the well-known analogy QUEEN-WOMAN+MAN=KING. We postulate that human brain representations share essential properties with these deep learning latent spaces. To verify this, we test whether artificial latent spaces can serve as a good model for decoding brain activity. We report improvements over state-of-the-art performance for reconstructing seen and imagined face images from fMRI brain activation patterns, using the latent space of a GAN (Generative Adversarial Network) model coupled with a Variational AutoEncoder (VAE). With another GAN model (BigBiGAN), we can decode and reconstruct natural scenes of any category from the corresponding brain activity. Our results suggest that deep learning can produce high-level representations approaching those found in the human brain. Finally, I will discuss whether these deep learning latent spaces could be relevant to the study of consciousness.
A machine learning way to analyse white matter tractography streamlines / Application of artificial intelligence in correcting motion artifacts and reducing scan time in MRI
1. Embedding is all you need: A machine learning way to analyse white matter tractography streamlines - Dr Shenjun Zhong, Monash Biomedical Imaging Embedding white matter streamlines with various lengths into fixed-length latent vectors enables users to analyse them with general data mining techniques. However, finding a good embedding schema is still a challenging task as the existing methods based on spatial coordinates rely on manually engineered features, and/or labelled dataset. In this webinar, Dr Shenjun Zhong will discuss his novel deep learning model that identifies latent space and solves the problem of streamline clustering without needing labelled data. Dr Zhong is a Research Fellow and Informatics Officer at Monash Biomedical Imaging. His research interests are sequence modelling, reinforcement learning and federated learning in the general medical imaging domain. 2. Application of artificial intelligence in correcting motion artifacts and reducing scan time in MRI - Dr Kamlesh Pawar, Monash Biomedical imaging Magnetic Resonance Imaging (MRI) is a widely used imaging modality in clinics and research. Although MRI is useful it comes with an overhead of longer scan time compared to other medical imaging modalities. The longer scan times also make patients uncomfortable and even subtle movements during the scan may result in severe motion artifact in the images. In this seminar, Dr Kamlesh Pawar will discuss how artificial intelligence techniques can reduce scan time and correct motion artifacts. Dr Pawar is a Research Fellow at Monash Biomedical Imaging. His research interest includes deep learning, MR physics, MR image reconstruction and computer vision.
Cross Domain Generalisation in Humans and Machines
Recent advances in deep learning have produced models that far outstrip human performance in a number of domains. However, where machine learning approaches still fall far short of human-level performance is in the capacity to transfer knowledge across domains. While a human learner will happily apply knowledge acquired in one domain (e.g., mathematics) to a different domain (e.g., cooking; a vinaigrette is really just a ratio between edible fat and acid), machine learning models still struggle profoundly at such tasks. I will present a case that human intelligence might be (at least partially) usefully characterised by our ability to transfer knowledge widely, and a framework that we have developed for learning representations that support such transfer. The model is compared to current machine learning approaches.
A function approximation perspective on neural representations
Activity patterns of neural populations in natural and artificial neural networks constitute representations of data. The nature of these representations and how they are learned are key questions in neuroscience and deep learning. In his talk, I will describe my group's efforts in building a theory of representations as feature maps leading to sample efficient function approximation. Kernel methods are at the heart of these developments. I will present applications to deep learning and neuronal data.
Making neural nets simple enough to succeed at universal relational generalization
Traditional brain-style (connectionist) approaches basically hit a wall when it comes to relational cognition. As an alternative to the well-known approaches of structured connectionism and deep learning, I present an engine for relational pattern recognition based on minimalist reinterpretations of first principles of connectionism. Results of computational experiments will be discussed on problems testing relational learning and universal generalization.
Biomedical Image and Genetic Data Analysis with machine learning; applications in neurology and oncology
In this presentation I will show the opportunities and challenges of big data analytics with AI techniques in medical imaging, also in combination with genetic and clinical data. Both conventional machine learning techniques, such as radiomics for tumor characterization, and deep learning techniques for studying brain ageing and prognosis in dementia, will be addressed. Also the concept of deep imaging, a full integration of medical imaging and machine learning, will be discussed. Finally, I will address the challenges of how to successfully integrate these technologies in daily clinical workflow.
Theoretical and computational approaches to neuroscience with complex models in high dimensions across multiple timescales: from perception to motor control and learning
Remarkable advances in experimental neuroscience now enable us to simultaneously observe the activity of many neurons, thereby providing an opportunity to understand how the moment by moment collective dynamics of the brain instantiates learning and cognition. However, efficiently extracting such a conceptual understanding from large, high dimensional neural datasets requires concomitant advances in theoretically driven experimental design, data analysis, and neural circuit modeling. We will discuss how the modern frameworks of high dimensional statistics and deep learning can aid us in this process. In particular we will discuss: how unsupervised tensor component analysis and time warping can extract unbiased and interpretable descriptions of how rapid single trial circuit dynamics change slowly over many trials to mediate learning; how to tradeoff very different experimental resources, like numbers of recorded neurons and trials to accurately discover the structure of collective dynamics and information in the brain, even without spike sorting; deep learning models that accurately capture the retina’s response to natural scenes as well as its internal structure and function; algorithmic approaches for simplifying deep network models of perception; optimality approaches to explain cell-type diversity in the first steps of vision in the retina.
Abstraction and Analogy in Natural and Artificial Intelligence
In 1955, John McCarthy and colleagues proposed an AI summer research project with the following aim: “An attempt will be made to find how to make machines use language, form abstractions and concepts, solve kinds of problems now reserved for humans, and improve themselves.” More than six decades later, all of these research topics remain open and actively investigated in the AI community. While AI has made dramatic progress over the last decade in areas such as vision, natural language processing, and robotics, current AI systems still almost entirely lack the ability to form humanlike concepts and abstractions. Some cognitive scientists have proposed that analogy-making is a central mechanism for conceptual abstraction and understanding in humans. Douglas Hofstadter called analogy-making “the core of cognition”, and Hofstadter and co-author Emmanuel Sander noted, “Without concepts there can be no thought, and without analogies there can be no concepts.” In this talk I will reflect on the role played by analogy-making at all levels of intelligence, and on prospects for developing AI systems with humanlike abilities for abstraction and analogy.
What can we further learn from the brain for artificial intelligence?
Deep learning is a prime example of how brain-inspired computing can benefit development of artificial intelligence. But what else can we learn from the brain for bringing AI and robotics to the next level? Energy efficiency and data efficiency are the major features of the brain and human cognition that today’s deep learning has yet to deliver. The brain can be seen as a multi-agent system of heterogeneous learners using different representations and algorithms. The flexible use of reactive, model-free control and model-based “mental simulation” appears to be the basis for computational and data efficiency of the brain. How the brain efficiently acquires and flexibly combines prediction and control modules is a major open problem in neuroscience and its solution should help developments of more flexible and autonomous AI and robotics.
Back-propagation in spiking neural networks
Back-propagation is a powerful supervised learning algorithm in artificial neural networks, because it solves the credit assignment problem (essentially: what should the hidden layers do?). This algorithm has led to the deep learning revolution. But unfortunately, back-propagation cannot be used directly in spiking neural networks (SNN). Indeed, it requires differentiable activation functions, whereas spikes are all-or-none events which cause discontinuities. Here we present two strategies to overcome this problem. The first one is to use a so-called 'surrogate gradient', that is to approximate the derivative of the threshold function with the derivative of a sigmoid. We will present some applications of this method for time series processing (audio, internet traffic, EEG). The second one concerns a specific class of SNNs, which process static inputs using latency coding with at most one spike per neuron. Using approximations, we derived a latency-based back-propagation rule for this sort of networks, called S4NN, and applied it to image classification.
Synthesizing Machine Intelligence in Neuromorphic Computers with Differentiable Programming
The potential of machine learning and deep learning to advance artificial intelligence is driving a quest to build dedicated computers, such as neuromorphic hardware that emulate the biological processes of the brain. While the hardware technologies already exist, their application to real-world tasks is hindered by the lack of suitable programming methods. Advances at the interface of neural computation and machine learning showed that key aspects of deep learning models and tools can be transferred to biologically plausible neural circuits. Building on these advances, I will show that differentiable programming can address many challenges of programming spiking neural networks for solving real-world tasks, and help devise novel continual and local learning algorithms. In turn, these new algorithms pave the road towards systematically synthesizing machine intelligence in neuromorphic hardware without detailed knowledge of the hardware circuits.
E-prop: A biologically inspired paradigm for learning in recurrent networks of spiking neurons
Transformative advances in deep learning, such as deep reinforcement learning, usually rely on gradient-based learning methods such as backpropagation through time (BPTT) as a core learning algorithm. However, BPTT is not argued to be biologically plausible, since it requires to a propagate gradients backwards in time and across neurons. Here, we propose e-prop, a novel gradient-based learning method with local and online weight update rules for recurrent neural networks, and in particular recurrent spiking neural networks (RSNNs). As a result, e-prop has the potential to provide a substantial fraction of the power of deep learning to RSNNs. In this presentation, we will motivate e-prop from the perspective of recent insights in neuroscience and show how these have to be combined to form an algorithm for online gradient descent. The mathematical results will be supported by empirical evidence in supervised and reinforcement learning tasks. We will also discuss how limitations that are inherited from gradient-based learning methods, such as sample-efficiency, can be addressed by considering an evolution-like optimization that enhances learning on particular task families. The emerging learning architecture can be used to learn tasks by a single demonstration, hence enabling one-shot learning.
Deep reinforcement learning and its neuroscientific implications
The last few years have seen some dramatic developments in artificial intelligence research. What implications might these have for neuroscience? Investigations of this question have, to date, focused largely on deep neural networks trained using supervised learning, in tasks such as image classification. However, there is another area of recent AI work which has so far received less attention from neuroscientists, but which may have more profound neuroscientific implications: Deep reinforcement learning. Deep RL offers a rich framework for studying the interplay among learning, representation and decision-making, offering to the brain sciences a new set of research tools and a wide range of novel hypotheses. I’ll provide a high level introduction to deep RL, discuss some recent neuroscience-oriented investigations from my group at DeepMind, and survey some wider implications for research on brain and behavior.
Machine reasoning in histopathologic image analysis
Deep learning is an emerging computational approach inspired by the human brain’s neural connectivity that has transformed machine-based image analysis. By using histopathology as a model of an expert-level pattern recognition exercise, we explore the ability for humans to teach machines to learn and mimic image-recognition and decision making. Moreover, these models also allow exploration into the ability for computers to independently learn salient histological patterns and complex ontological relationships that parallel biological and expert knowledge without the need for explicit direction or supervision. Deciphering the overlap between human and unsupervised machine reasoning may aid in eliminating biases and improving automation and accountability for artificial intelligence-assisted vision tasks and decision-making. Aleksandar Ivanov Title:
Untangling the web of behaviours used to produce spider orb webs
Many innate behaviours are the result of multiple sensorimotor programs that are dynamically coordinated to produce higher-order behaviours such as courtship or architecture construction. Extendend phenotypes such as architecture are especially useful for ethological study because the structure itself is a physical record of behavioural intent. A particularly elegant and easily quantifiable structure is the spider orb-web. The geometric symmetry and regularity of these webs have long generated interest in their behavioural origin. However, quantitative analyses of this behaviour have been sparse due to the difficulty of recording web-making in real-time. To address this, we have developed a novel assay enabling real-time, high-resolution tracking of limb movements and web structure produced by the hackled orb-weaver Uloborus diversus. With its small brain size of approximately 100,000 neurons, the spider U. diversus offers a tractable model organism for the study of complex behaviours. Using deep learning frameworks for limb tracking, and unsupervised behavioural clustering methods, we have developed an atlas of stereotyped movement motifs and are investigating the behavioural state transitions of which the geometry of the web is an emergent property. In addition to tracking limb movements, we have developed algorithms to track the web’s dynamic graph structure. We aim to model the relationship between the spider’s sensory experience on the web and its motor decisions, thereby identifying the sensory and internal states contributing to this sensorimotor transformation. Parallel efforts in our group are establishing 2-photon in vivo calcium imaging protocols in this spider, eventually facilitating a search for neural correlates underlying the internal and sensory state variables identified by our behavioural models. In addition, we have assembled a genome, and are developing genetic perturbation methods to investigate the genetic underpinnings of orb-weaving behaviour. Together, we aim to understand how complex innate behaviours are coordinated by underlying neuronal and genetic mechanisms.
Understanding machine learning via exactly solvable statistical physics models
The affinity between statistical physics and machine learning has long history, this is reflected even in the machine learning terminology that is in part adopted from physics. I will describe the main lines of this long-lasting friendship in the context of current theoretical challenges and open questions about deep learning. Theoretical physics often proceeds in terms of solvable synthetic models, I will describe the related line of work on solvable models of simple feed-forward neural networks. I will highlight a path forward to capture the subtle interplay between the structure of the data, the architecture of the network, and the learning algorithm.
Deep learning for model-based RL
Model-based approaches to control and decision making have long held the promise of being more powerful and data efficient than model-free counterparts. However, success with model-based methods has been limited to those cases where a perfect model can be queried. The game of Go was mastered by AlphaGo using a combination of neural networks and the MCTS planning algorithm. But planning required a perfect representation of the game rules. I will describe new algorithms that instead leverage deep neural networks to learn models of the environment which are then used to plan, and update policy and value functions. These new algorithms offer hints about how brains might approach planning and acting in complex environments.