Neuroscience seminars

The vIRt nucleus in the medulla, composed of mainly inhibitory neurons, is necessary for whisking rhythm generation. It innervates motoneurons in the facial nucleus (FN) that project to intrinsic vibrissa muscles. The nearby pre-Bötzinger complex (pBötC), which generates inhalation, sends inhibitory inputs to the vIRt nucleus which contribute to the synchronization of vIRt neurons. Lower-amplitude periodic whisking, however, can occur after decay of the pBötC signal. To explain how vIRt network generates these “intervening” whisks by bursting in synchrony, and how pBötC input induces strong whisks, we construct and analyze a conductance-based (CB) model of the vIRt circuit composed of hypothetical two groups, vIRtr and vIRtp, of bursting inhibitory neurons with spike-frequency adaptation currents and constant external inputs. The CB model is reduced to a rate model to enable analytical treatment. We find, analytically and computationally, that without pBötC input, periodic bursting states occur within a certain ranges of network connectivities. Whisk amplitudes increase with the level constant external input to the vIRT. With pBötC inhibition intact, the amplitude of the first whisk in a breathing cycle is larger than the intervening whisks for large pBötC input and small inhibitory coupling between the vIRT sub-populations. The pBötC input advances the next whisk and shortens its amplitude if it arrives at the beginning of the whisking cycle generated by the vIRT, and delays the next whisks if it arrives at the end of that cycle. Our theory provides a mechanism for whisking generation and reveals how whisking frequency and amplitude are controlled.

Despite undeniable progress in the science of consciousness, there is no consensus on even fundamental theoretical and empirical questions, such as whether ‘phenomenal consciousness’ is a scientifically respectable concept, whether phenomenal consciousness overflows access consciousness, or whether the neural correlates of perceptual consciousness are in the front or in the back of the cerebral cortex. Notably, disagreement also concerns proposed theories of consciousness. However, since not all theories are mutually incompatible, there have been attempts to make theoretical progress by integrating or unifying them. I shall argue that this is preferable over proposing yet another theory, but that one should not expect it to yield a complete theory of consciousness. Rather, theoretical work in consciousness research should focus on core hypotheses about consciousness that different theories of consciousness have in common. Such a ‘minimal unifying model’ of consciousness can then be used as a basis for formulating more specific hypotheses about consciousness.

Neural codes, such as temporal codes (precisely timed spikes) and rate codes (instantaneous spike firing rates), are believed to be used in encoding sensory information into spike trains of cortical neurons. Temporal and rate codes co-exist in the spike train and such multiplexed neural code-carrying spike trains have been shown to be spatially synchronized in multiple neurons across different cortical layers during sensory information processing. Inhibition is suggested to promote such synchronization, but it is unclear whether distinct subtypes of interneurons make different contributions in the synchronization of multiplexed neural codes. To test this, in vivo single-unit recordings from barrel cortex were combined with optogenetic manipulations to determine the contributions of parvalbumin (PV)- and somatostatin (SST)-positive interneurons to synchronization of precisely timed spike sequences. We found that PV interneurons preferentially promote the synchronization of spike times when instantaneous firing rates are low (<12 Hz), whereas SST interneurons preferentially promote the synchronization of spike times when instantaneous firing rates are high (>12 Hz). Furthermore, using a computational model, we demonstrate that these effects can be explained by PV and SST interneurons having preferential contribution to feedforward and feedback inhibition, respectively. Overall, these results show that PV and SST interneurons have distinct frequency (rate code)-selective roles in dynamically gating the synchronization of spike times (temporal code) through preferentially recruiting feedforward and feedback inhibitory circuit motifs. The inhibitory neural circuit mechanisms we uncovered here his may have critical roles in regulating neural code-based somatosensory information processing in the neocortex.

General anesthesia is a drug-induced, reversible condition comprised of five behavioral states: unconsciousness, amnesia (loss of memory), antinociception (loss of pain sensation), akinesia (immobility), and hemodynamic stability with control of the stress response. Our work shows that a primary mechanism through which anesthetics create these altered states of arousal is by initiating and maintaining highly structured oscillations. These oscillations impair communication among brain regions. We illustrate this effect by presenting findings from our human studies of general anesthesia using high-density EEG recordings and intracranial recordings. These studies have allowed us to give a detailed characterization of the neurophysiology of loss and recovery of consciousness due to propofol. We show how these dynamics change systematically with different anesthetic classes and with age. As a consequence, we have developed a principled, neuroscience-based paradigm for using the EEG to monitor the brain states of patients receiving general anesthesia. We demonstrate that the state of general anesthesia can be rapidly reversed by activating specific brain circuits. Finally, we demonstrate that the state of general anesthesia can be controlled using closed loop feedback control systems. The success of our research has depended critically on tight coupling of experiments, signal processing research and mathematical modeling.

A wealth of experimental studies show that the trial-to-trial variability of neuronal activity is quenched during stimulus evoked responses. This fact has helped ground a popular view that the variability of spiking activity can be decomposed into two components. The first is due to irregular spike timing conditioned on the firing rate of a neuron (i.e. a Poisson process), and the second is the trial-to-trial variability of the firing rate itself. Quenching of the variability of the overall response is assumed to be a reflection of a suppression of firing rate variability. Network models have explained this phenomenon through a variety of circuit mechanisms. However, in all cases, from the vantage of a neuron embedded within the network, quenching of its response variability is inherited from its synaptic input. We analyze in vivo whole cell recordings from principal cells in layer (L) 2/3 of mouse visual cortex. While the variability of the membrane potential is quenched upon stimulation, the variability of excitatory and inhibitory currents afferent to the neuron are amplified. This discord complicates the simple inheritance assumption that underpins network models of neuronal variability. We propose and validate an alternative (yet not mutually exclusive) mechanism for the quenching of neuronal variability. We show how an increase in synaptic conductance in the evoked state shunts the transfer of current to the membrane potential, formally decoupling changes in their trial-to-trial variability. The ubiquity of conductance based neuronal transfer combined with the simplicity of our model, provides an appealing framework. In particular, it shows how the dependence of cellular properties upon neuronal state is a critical, yet often ignored, factor. Further, our mechanism does not require a decomposition of variability into spiking and firing rate components, thereby challenging a long held view of neuronal activity.

Our group is interested in discovering design principles that govern the structure and function of neurons and neural circuits. We record from well-defined neurons, mainly in flies’ visual systems, to measure the molecular and cellular factors that determine relevant measures of performance, such as representational capacity, dynamic range and accuracy. We combine this empirical approach with modelling to see how the basic elements of neural systems (ion channels, second messengers systems, membranes, synapses, neurons, circuits and codes) combine to determine performance. We are investigating four general problems. How are circuits designed to integrate information efficiently? How do sensory adaptation and synaptic plasticity contribute to efficiency? How do the sizes of neurons and networks relate to energy consumption and representational capacity? To what extent have energy costs shaped neurons, sense organs and brain regions during evolution?

Exposure to proper environment during early development is essential for brain maturation. Impaired sensory input or abnormal experiences can have long-term negative consequences on brain health. We seek to define the precise synaptic aberrations caused by abnormal visual experiences early in life, and how these can be remedied through viral, genetic and environmental approaches. Resulting knowledge will contribute to the development of new approaches to mitigate nervous system damage caused by abnormal early life experience.

The brain has a hugely diverse, heterogeneous structure. By contrast, many functional neural models are homogeneous. We compared the performance of spiking neural networks trained to carry out difficult tasks, with varying degrees of heterogeneity. Introducing heterogeneity in membrane and synapse time constants substantially improved task performance, and made learning more stable and robust across multiple training methods, particularly for tasks with a rich temporal structure. In addition, the distribution of time constants in the trained networks closely matches those observed experimentally. We suggest that the heterogeneity observed in the brain may be more than just the byproduct of noisy processes, but rather may serve an active and important role in allowing animals to learn in changing environments.

Spontaneous behavior in animals and humans shows a striking amount of variability both in the spatial domain (which actions to choose) and temporal domain (when to act). Concatenating actions into sequences and behavioral plans reveals the existence of a hierarchy of timescales ranging from hundreds of milliseconds to minutes. How do multiple timescales emerge from neural circuit dynamics? How do circuits modulate temporal responses to flexibly adapt to changing demands? In this talk, we will present recent results from experiments and theory suggesting a new computational mechanism generating the temporal variability underlying naturalistic behavior and cortical activity. We will show how neural activity from premotor areas unfolds through temporal sequences of attractors, which predict the intention to act. These sequences naturally emerge from recurrent cortical networks, where correlated neural variability plays a crucial role in explaining the observed variability in action timing. We will then discuss how reaction times can be accelerated or slowed down via gain modulation, flexibly induced by neuromodulation or perturbations; and how gain modulation may control response timing in the visual cortex. Finally, we will present a new biologically plausible way to generate a reservoir of multiple timescales in cortical circuits.

Age-related Macular Degeneration (AMD) and Retinitis Pigmentosa (RP) are vision disorders caused by loss of rod and cone photoreceptors, but downstream retinal neurons also show physiological and morphological changes, resulting in the emergence of hyperactivity and rhythmic firing in many retinal ganglion cells (RGC). We recently discovered that retinoic acid (RA) is a key signal that triggers hyperactivity and that blockers of RA unmask light responses in RGCs that would otherwise be obscured. Recent work is revealing where in the retina circuit RA initiates functional changes. Moreover, interfering with the RA signaling pathway with drug or gene therapy can improve spatial vision in a mouse model of RP, providing a new strategy for enhancing low vision in human RP and AMD.

Although substance use disorders (SUDs) occur commonly in patients with schizophrenia and significantly worsen their clinical course, the neurobiological basis of SUDs in schizophrenia is not well understood. Therefore, there is a critical need to understand the mechanisms underlying SUDs in schizophrenia in order to identify potential targets for therapeutic intervention. Since drug use usually begins in adolescence, it is also important to understand the long-term effects of adolescent drug exposure on schizophrenia- and reward- related behaviors and circuitry. This talk will combine pharmacological, behavioral, electrophysiologic (local field potential recordings) and pre-clinical magnetic resonance imaging (resting-state functional connectivity and magnetic resonance spectroscopy) approaches to study these topics with an eye toward developing better treatment approaches.

During this talk, I will seek to reposition synaesthesia as model system for understanding variation in the construction of the human mind and brain. People with synaesthesia inhabit a remarkable mental world in which numbers can be coloured, words can have tastes, and music is a visual spectacle. Synaesthesia has now been documented for over two hundred years but key questions remain unanswered about why it exists, and what such conditions might mean for theories of the human mind. I will argue that we need to rethink synaesthesia as not just representing exceptional experiences, but as a product of an unusual neurodevelopmental cascade from genes to brain to cognition of which synaesthesia is only one outcome. Rather than synaesthesia being a kind of 'dangling qualia' (atypical experiences attached to a typical mind/brain) it should be thought of as unusual experiences that accompany an unusual mind/brain. Specifically, differences in the brains of synaesthetes support a distinctive way of thinking (enhanced memory, imagery etc.) and may also predispose towards particular clinical vulnerabilities. It is this neurodiverse phenotype that is an important object of study in its own right and may explain any adaptive value for having synaesthesia.

Spike trains recorded from the cortex of behaving animals can be complex, highly variable from trial to trial, and therefore challenging to interpret. A fraction of cells exhibit trial-averaged responses with obvious task-related features such as pure tone frequency tuning in auditory cortex. However, a substantial number of cells (including cells in primary sensory cortex) do not appear to fire in a task-related manner and are often neglected from analysis. We recently used a novel single-trial, spike-timing-based analysis to show that both classically responsive and non-classically responsive cortical neurons contain significant information about sensory stimuli and behavioral decisions suggesting that non-classically responsive cells may play an underappreciated role in perception and behavior. We now expand this investigation to explore the synaptic origins and potential contribution of these cells to network function. To do so, we trained a novel spiking recurrent neural network model that incorporates spike-timing-dependent plasticity (STDP) mechanisms to perform the same task as behaving animals. By leveraging excitatory and inhibitory plasticity rules this model reproduces neurons with response profiles that are consistent with previously published experimental data, including classically responsive and non-classically responsive neurons. We found that both classically responsive and non-classically responsive neurons encode behavioral variables in their spike times as seen in vivo. Interestingly, plasticity in excitatory-to-excitatory synapses increased the proportion of non-classically responsive neurons and may play a significant role in determining response profiles. Finally, our model also makes predictions about the synaptic origins of classically and non-classically responsive neurons which we can compare to in vivo whole-cell recordings taken from the auditory cortex of behaving animals. This approach successfully recapitulates heterogeneous response profiles measured from behaving animals and provides a powerful lens for exploring large-scale neuronal dynamics and the plasticity rules that shape them.